BAC Information

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BAC

Clone NameB6Ng01-076O15
Chromosome9 (Build37)
Map Location 118,672,341 - 118,770,923
singlet/doubletdoublet
Overlap geneItga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076O15.bB6Ng01-076O15.g
ACCDH893036DH893037
length998652
definitionDH893036|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O15, 5' end.DH893037|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,769,927 - 118,770,923)(118,672,341 - 118,672,992)
sequence
gaattccaaaggggaaacccattcccatcatcccaagctccatgaggtaa
gcacagagaaggctataactatgtttagtccccacctcccaatgcaccag
tttttcatatcagtaaggacctcaactacagagttttgttgttgaaatgg
aaaggataaacaagggcacaaaacatctgttcacagtaacagctcccttg
agatctgcagagctggggacggagcacagccaccaggacagcctaggtcc
ttttattctagaaagaaagcgacactgagcatactgtattcttttactta
attgtgtatgtggttcggtgacaggaaccttgaccagttcgctgtaccaa
gagagtaaatgtaaaatcctgaagacgttgtagctttggctttgatgcct
tctttctaattgaaaactatctcctaaagaaaatatatttttgtgcagcc
gcttctcgtcacacggaggaaagctgggttctgtctgaaaggtcaggagg
ttaccgagaccaaagacagagacagggagaaatgaagcggtgatatcaac
actccaggaagcagggtgcggcgtctcccgtgagcctgctcgcttatgct
atagaggaatgcctgtgtttccaccagctctagggatggctgacacaagg
ctttcaccctcagtcctgggcccctttttctcccctttgggggtaatcag
ccaatatgccagggagtcaagagtacaggccacatcaggctccccataaa
agagaatttcatttccatgtaatcagagaaaggcgggccccagagaggcc
cattttcgcaggcatggatggcctttaccagagctagagtgatatggaag
ggaagtagttttggagatgaagtgacagcgagatttccagatgtggctgg
attgtcgcagtgagagatggaggcgtaaatacgttatctgagcacttgac
atgcaagcccgagatgctcgccttccccaagatggttgagacgctctg
gaattcacttctgtgtattctgcaaatttaaagtgaggccagcccttcct
gtttttatttaatttgccactgtgagccaaggaaaggaaaaactgtcagt
tactttttttttttttttttctttttccagaggggaaaagcagctatggg
gtagatttccaagtcacatggctagccagctggtgccacagtgatcaagc
ccagcctgcttagggcccttcagtgagaagtgggactaagtcaccctcaa
ctcctcccaaacggtaacgcgtgtcttctttaggcccggagaggtgttcc
tgcctctggcccatggttgggtcctggctccagcccacccatgctgaact
tttcatttatttttcaattcttattttaaattttaatttaattttttccc
ttttcactttacatcccactcactgcccccctccccgtcaccccttccca
caatccttccccctctaccctcccctcctcctctgagcaggtgggagcct
ctctgggtatccccccaccctggcacttcaaggctaggtgcttcgtctcc
tactgaggccagacaatgcagcccagctacaagaacatatcctgctcaag
aacagctgctgggatagcccccattccagttgttcattctctgagaggct
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118769927_118770923
seq2: B6Ng01-076O15.b_49_1046 (reverse)

seq1  CAGAGCGTCTC-ACCATC-TGGGGAAGGCGAGCATCTCGGGCCTGCATGT  48
      ||||||||||| |||||| ||||||||||||||||||||||| |||||||
seq2  CAGAGCGTCTCAACCATCTTGGGGAAGGCGAGCATCTCGGGCTTGCATGT  50

seq1  CAAGTGCTCAGATAACGTATTTACGCCTCCATCTCTCACTGCGACAATCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTCAGATAACGTATTTACGCCTCCATCTCTCACTGCGACAATCC  100

seq1  AGCCACATCTGGAAATTCTTCGCTGTCACTTCATCTCCAAAACTACTTCC  148
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AGCCACATCTGGAAAT--CTCGCTGTCACTTCATCTCCAAAACTACTTCC  148

seq1  CTTCCATATCACTCTAGCTCTGGTAAAGGCCATCCATGCCTGCG-AAATG  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTCCATATCACTCTAGCTCTGGTAAAGGCCATCCATGCCTGCGAAAATG  198

seq1  GGCCTCTCTGGGGCCCGCCTTTCTCTGATTACATGGAAATGAAATTCTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTGGGGCCCGCCTTTCTCTGATTACATGGAAATGAAATTCTCT  248

seq1  TTTATGGGGAGCCTGATGTGGCCTGTACTCTTGACTCCCTGGCATATTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGGAGCCTGATGTGGCCTGTACTCTTGACTCCCTGGCATATTGG  298

seq1  CTGATTACCCCCAAAGGGGAGAAAAAGGGGCCCAGGACTGAGGGTGAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTACCCCCAAAGGGGAGAAAAAGGGGCCCAGGACTGAGGGTGAAAG  348

seq1  CCTTGTGTCAGCCATCCCTAGAGCTGGTGGAAACACAGGCATTCCTCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTCAGCCATCCCTAGAGCTGGTGGAAACACAGGCATTCCTCTAT  398

seq1  AGCATAAGCGAGCAGGCTCACGGGAGACGCCGCACCCTGCTTCCTGGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGCGAGCAGGCTCACGGGAGACGCCGCACCCTGCTTCCTGGAGT  448

seq1  GTTGATATCACCGCTTCATTTCTCCCTGTCTCTGTCTTTGGTCTCGGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATCACCGCTTCATTTCTCCCTGTCTCTGTCTTTGGTCTCGGTAA  498

seq1  CCTCCTGACCTTTCAGACAGAACCCAGCTTTCCTCCGTGTGACGAGAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGACCTTTCAGACAGAACCCAGCTTTCCTCCGTGTGACGAGAAGC  548

seq1  GGCTGCACAAAAATATATTTTCTTTAGGAGATAGTTTTCAATTAGAAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACAAAAATATATTTTCTTTAGGAGATAGTTTTCAATTAGAAAGA  598

seq1  AGGCATCAAAGCCAAAGCTACAACGTCTTCAGGATTTTACATTTACTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAAAGCCAAAGCTACAACGTCTTCAGGATTTTACATTTACTCTC  648

seq1  TTGGTACAGCGAACTGGTCAAGGTTCCTGTCACCGAACCACATACACAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACAGCGAACTGGTCAAGGTTCCTGTCACCGAACCACATACACAAT  698

seq1  TAAGTAAAAGAATACAGTATGCTCAGTGTCGCTTTCTTTCTAGAATAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAGAATACAGTATGCTCAGTGTCGCTTTCTTTCTAGAATAAAA  748

seq1  GGACCTAGGCTGTCCTGGTGGCTGTGCTCCGTCCCCAGCTCTGCAGATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGGCTGTCCTGGTGGCTGTGCTCCGTCCCCAGCTCTGCAGATCT  798

seq1  CAAGGGAGCTGTTACTGTGAACAGATGTTTTGTGCCCTTGTTTATCCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGCTGTTACTGTGAACAGATGTTTTGTGCCCTTGTTTATCCTTT  848

seq1  CCATTTCAACAACAAAACTCTGTAGTTGAGGTCCTTACTGATATGAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCAACAACAAAACTCTGTAGTTGAGGTCCTTACTGATATGAAAAA  898

seq1  CTGGTGCATTGGGAGGTGGGGACTAAACATAGTTATAGCCTTCTCTGTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCATTGGGAGGTGGGGACTAAACATAGTTATAGCCTTCTCTGTGC  948

seq1  TTACCTCATGGAGCTTGGGATGATGGGAATGGGTTTCCCCTTTGGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCATGGAGCTTGGGATGATGGGAATGGGTTTCCCCTTTGGAATTC  998

seq1: chr9_118672341_118672992
seq2: B6Ng01-076O15.g_70_721

seq1  GAATTCACTTCTGTGTATTCTGCAAATTTAAAGTGAGGCCAGCCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTGTGTATTCTGCAAATTTAAAGTGAGGCCAGCCCTTCCT  50

seq1  GTTTTTATTTAATTTGCCACTGTGAGCCAAGGAAAGGAAAAACTGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTTAATTTGCCACTGTGAGCCAAGGAAAGGAAAAACTGTCAGT  100

seq1  TACTTTTTTTTTTTTTTTTTCTTTTTCCAGAGGGGAAAAGCAGCTATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTTTTTTTTTTCTTTTTCCAGAGGGGAAAAGCAGCTATGGG  150

seq1  GTAGATTTCCAAGTCACATGGCTAGCCAGCTGGTGCCACAGTGATCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTCCAAGTCACATGGCTAGCCAGCTGGTGCCACAGTGATCAAGC  200

seq1  CCAGCCTGCTTAGGGCCCTTCAGTGAGAAGTGGGACTAAGTCACCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGCTTAGGGCCCTTCAGTGAGAAGTGGGACTAAGTCACCCTCAA  250

seq1  CTCCTCCCAAACGGTAACGCGTGTCTTCTTTAGGCCCGGAGAGGTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCAAACGGTAACGCGTGTCTTCTTTAGGCCCGGAGAGGTGTTCC  300

seq1  TGCCTCTGGCCCATGGTTGGGTCCTGGCTCCAGCCCACCCATGCTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGGCCCATGGTTGGGTCCTGGCTCCAGCCCACCCATGCTGAACT  350

seq1  TTTCATTTATTTTTCAATTCTTATTTTAAATTTTAATTTAATTTTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATTTTTCAATTCTTATTTTAAATTTTAATTTAATTTTTTCCC  400

seq1  TTTTCACTTTACATCCCACTCACTGCCCCCCTCCCCGTCACCCCTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTACATCCCACTCACTGCCCCCCTCCCCGTCACCCCTTCCCA  450

seq1  CAATCCTTCCCCCTCTACCCTCCCCTCCTCCTCTGAGCAGGTGGGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTTCCCCCTCTACCCTCCCCTCCTCCTCTGAGCAGGTGGGAGCCT  500

seq1  CTCTGGGTATCCCCCCACCCTGGCACTTCAAGGCTAGGTGCTTCGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTATCCCCCCACCCTGGCACTTCAAGGCTAGGTGCTTCGTCTCC  550

seq1  TACTGAGGCCAGACAAGGCAGCCCAGCTACAAGAACATATCCTGCTCAAG  600
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTGAGGCCAGACAATGCAGCCCAGCTACAAGAACATATCCTGCTCAAG  600

seq1  AACAGCTGCTGGGATAGCCCCCATTCCAGTTGTTCATTCTCTGAGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGCTGGGATAGCCCCCATTCCAGTTGTTCATTCTCTGAGAGGCT  650

seq1  TC  652
      ||
seq2  TC  652