BAC Information

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BAC

Clone NameB6Ng01-076P13
Chromosome9 (Build37)
Map Location 9,200,916 - 9,377,375
singlet/doubletdoublet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076P13.bB6Ng01-076P13.g
ACCDH893074DH893075
length1,139360
definitionDH893074|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P13, 5' end.DH893075|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,376,229 - 9,377,375)(9,200,916 - 9,201,263)
sequence
gaattcatctctcagatattaccccagtggcagagatagattttggtctc
tgatctccctgacatcttcagacccttcacaaaagatgggctgggggcca
ctggatatcattgtccctcttcccaacaatgaataaatcttcattttctc
agtggcatgtggaggatgggtgagcaaacctgttttgttcgatctgctaa
gtccactaatgctctcaacctgagtatcatacacatgcagtgagatgatt
gggcttccaccaccctcagaaaatgtgtctagtaaatcatctcaactata
gccttctgtgtatttatacatgaccagttttatattttggatgcatacaa
ttaagatatgcttgcttgatacaggttcaggggctactgagtatctacaa
atctaatcaattcatagatgtccttaggttcaagactatatcctgtatat
gaatatttttgaatcaatttataaaaataaggtcagagacagaaaaatac
acttgtgactgcattttttggtacaacagtgacatcttgtgggaaaaact
tagtgtgtctaaatggttctgagtacttcaaaagtagcttttctcttcag
gaagtgagaactggattgaatttgagattcaaatttgaatttgagaccat
tgacatacagatcaccctctatgactttaatatcgcacatcatcttttaa
taaaatagcaaaatgtttcagaattgtgcattagctgatgttgaaggaag
agagatttttcctgcagctgtttaagtcagtgaaatctgagaaaaggatt
gtctctgattttagaggggagaaagggtggtttctgtctgagagtgctct
gtgataatttactttgaaagcacgtaaaaagtacttgtcttctacataca
ccgctcaacacaacacaaacacacacacacacacacacacaccacccaca
cccccacccaggatacttttcaaagctgaaatgactatggctcattggag
tctgtagcatagtacttactgagcacgcagttggacaaagcttcgtgaaa
gcttgtactgtttttgctttcataaggacgtcaagcctcctagcctgctt
aggcaagttgcttagagagcttaaggcgtaatttcactc

cggaattgagaagaaaataactatcctgcctccggacacatctcccacag
aaaaagggcacatagccaccacctctctaggtaaacggtggctggaacat
aggtcgggtgctttgggcagctgtgtgtctgggtggggcatgaaaggaat
gaatgtggttatcaaggcgtttctgagtaaggagcccttggaaggagatg
acagtgaggggtcatgggaaaagaagttcccttcaccccacttcctggcc
gcattcacagtgtacaggtcatttgcaactgatgtttaccaaagggaact
gaacaggggactctttgggttggggagaaacttcgaataccaccgataga
tacagagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9376229_9377375
seq2: B6Ng01-076P13.b_47_1185 (reverse)

seq1  GAGTGAAATCAGCCCTTAGCCTC-CTAAGCAACCTGCCCTAGCCAGCTAG  49
      ||||||||| |  |||||  ||| ||||||||| ||||  |||  |||||
seq2  GAGTGAAATTACGCCTTAAGCTCTCTAAGCAACTTGCCTAAGCAGGCTAG  50

seq1  GCAGGCTGGCCGTCCTTACTGAAGC-AAAACAGTAC-AGCTTTCACGAGG  97
      | ||||| | ||||||||   |||| |||||||||| ||||||||||| |
seq2  G-AGGCTTGACGTCCTTATGAAAGCAAAAACAGTACAAGCTTTCACGAAG  99

seq1  CTTTGTCCAACTTGCGTGCTCAGTAAGTACCTATGCTACAGACTCCAATG  147
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CTTTGTCCAAC-TGCGTGCTCAGTAAGTA-CTATGCTACAGACTCCAATG  147

seq1  AGCCATAGTCATTTCAGCCTTTGGAAAGATATCCTGGTGTGTGTGTGTGT  197
      ||||||||||||||||| ||||| |||| ||||||||     ||| | ||
seq2  AGCCATAGTCATTTCAG-CTTTGAAAAG-TATCCTGG-----GTGGGGGT  190

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGTGTTTGAGC  247
      ||| ||| ||||||||||||||||||||||||||||| ||||| ||||||
seq2  GTGGGTG-GTGTGTGTGTGTGTGTGTGTGTGTTTGTG-TTGTG-TTGAGC  237

seq1  GGTGTATGTAGAAGACAAGTACTTTTTACGTGCTTTCAAAGTAAATTATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGTAGAAGACAAGTACTTTTTACGTGCTTTCAAAGTAAATTATC  287

seq1  ACAGAGCACTCTCAGACAG-AACCACCC-TTCTCCCCTCTAAAATCAGAG  345
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACAGAGCACTCTCAGACAGAAACCACCCTTTCTCCCCTCTAAAATCAGAG  337

seq1  ACAATCCTTTTCTCAGATTTCACTGACTTAAACAGCTGCAGGAAAAATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTTTTCTCAGATTTCACTGACTTAAACAGCTGCAGGAAAAATCT  387

seq1  CTCTTCCTTCAACATCAGCTAATGCACAATTCTGAAACATTTTGCTATTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTCAACATCAGCTAATGCACAATTCTGAAACATTTTGCTATTT  437

seq1  TATTAAAAGATGATGTGCGATATTAAAGTCATAGAGGGTGATCTGTATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGATGATGTGCGATATTAAAGTCATAGAGGGTGATCTGTATGT  487

seq1  CAATGGTCTCAAATTCAAATTTGAATCTCAAATTCAATCCAGTTCTCACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTCTCAAATTCAAATTTGAATCTCAAATTCAATCCAGTTCTCACT  537

seq1  TCCTGAAGAGAAAAGCTACTTTTGAAGTACTCAGAACCATTTAGACACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGAGAAAAGCTACTTTTGAAGTACTCAGAACCATTTAGACACAC  587

seq1  TAAGTTTTTCCCACAAGATGTCACTGTTGTACCAAAAAATGCAGTCACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTCCCACAAGATGTCACTGTTGTACCAAAAAATGCAGTCACAA  637

seq1  GTGTATTTTTCTGTCTCTGACCTTATTTTTATAAATTGATTCAAAAATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTCTGTCTCTGACCTTATTTTTATAAATTGATTCAAAAATAT  687

seq1  TCATATACAGGATATAGTCTTGAACCTAAGGACATCTATGAATTGATTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACAGGATATAGTCTTGAACCTAAGGACATCTATGAATTGATTAG  737

seq1  ATTTGTAGATACTCAGTAGCCCCTGAACCTGTATCAAGCAAGCATATCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGATACTCAGTAGCCCCTGAACCTGTATCAAGCAAGCATATCTT  787

seq1  AATTGTATGCATCCAAAATATAAAACTGGTCATGTATAAATACACAGAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATGCATCCAAAATATAAAACTGGTCATGTATAAATACACAGAAG  837

seq1  GCTATAGTTGAGATGATTTACTAGACACATTTTCTGAGGGTGGTGGAAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTTGAGATGATTTACTAGACACATTTTCTGAGGGTGGTGGAAGC  887

seq1  CCAATCATCTCACTGCATGTGTATGATACTCAGGTTGAGAGCATTAGTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATCTCACTGCATGTGTATGATACTCAGGTTGAGAGCATTAGTGG  937

seq1  ACTTAGCAGATCGAACAAAACAGGTTTGCTCACCCATCCTCCACATGCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAGATCGAACAAAACAGGTTTGCTCACCCATCCTCCACATGCCA  987

seq1  CTGAGAAAATGAAGATTTATTCATTGTTGGGAAGAGGGACAATGATATCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATGAAGATTTATTCATTGTTGGGAAGAGGGACAATGATATCC  1037

seq1  AGTGGCCCCCAGCCCATCTTTTGTGAAGGGTCTGAAGATGTCAGGGAGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCCCAGCCCATCTTTTGTGAAGGGTCTGAAGATGTCAGGGAGAT  1087

seq1  CAGAGACCAAAATCTATCTCAGCCACTGGGGTAATATCTGAGAGATGAAT  1145
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGAGACCAAAATCTATCTCTGCCACTGGGGTAATATCTGAGAGATGAAT  1137

seq1  TC  1147
      ||
seq2  TC  1139


seq1: chr9_9200916_9201263
seq2: B6Ng01-076P13.g_82_428

seq1  AAAATAACTATCCTGCCTCCGGACACATCTCCCACAGAAATATTTTCACA  50
      |||||||||||||||||||||||||||||||||||||||| |    ||||
seq2  AAAATAACTATCCTGCCTCCGGACACATCTCCCACAGAAA-AAGGGCACA  49

seq1  TAGCCACCACCTCTCTAGGTAAACGGTGGCTGGAACATAGGTCGGGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCACCTCTCTAGGTAAACGGTGGCTGGAACATAGGTCGGGTGCT  99

seq1  TTGGGCAGCTGTGTGCTCGGGTGGGGCATGAAAGGAATGAATGTGGTTAT  150
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTGGGCAGCTGTGTGTCTGGGTGGGGCATGAAAGGAATGAATGTGGTTAT  149

seq1  CAAGGCGTTTCTGAGTAAGGAGCCCTTGGAAGGAGATGACAGTGAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGTTTCTGAGTAAGGAGCCCTTGGAAGGAGATGACAGTGAGGGGT  199

seq1  CATGGGAAAAGAAGTTCCCTTCACCCCACTTCCTGGCCGCATTCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAAAGAAGTTCCCTTCACCCCACTTCCTGGCCGCATTCACAGTG  249

seq1  TACAGGCCATCAGCAACTGATGTTTACCAAAGGGAACTGAAGAGGGGACT  300
      |||||| |||  ||||||||||||||||||||||||||||| ||||||||
seq2  TACAGGTCATTTGCAACTGATGTTTACCAAAGGGAACTGAACAGGGGACT  299

seq1  CTCTGGGTGGGGGAGAAACATCGAAGACCACAGATAGATACAGAGCTT  348
      || ||||| |||||||||| ||||| ||||| ||||||||||||||||
seq2  CTTTGGGTTGGGGAGAAACTTCGAATACCACCGATAGATACAGAGCTT  347


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