BAC Information

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BAC

Clone NameB6Ng01-077A02
Chromosome9 (Build37)
Map Location 14,599,535 - 14,750,429
singlet/doubletdoublet
Overlap geneMre11a, LOC100040259, Gpr83, Folr4
Upstream geneMtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49
Downstream genePanx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A02.bB6Ng01-077A02.g
ACCDH893097DH893098
length1,0581,132
definitionDH893097|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A02, 5' end.DH893098|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,749,346 - 14,750,429)(14,599,535 - 14,600,673)
sequence
gaattcacaggaatgaaacacgtttcctaaatatcaatttctccctggag
tgagttttgtttgtagcacaatactgctcacagcagtgtagcacgttttc
catctgtggggctcattattttaagacaagtgtcggtgttgggatggacg
ctatgtatacaccctgccccaacctacctggctttgccaattttatctcc
tagataaagaattcctcctaaagtatgaccggggaaggtacagtgctgat
caatacagcttctagaacaagaaccttccaggaaaaaaatcaactgtagg
gtgtttagtatgttccccaggtggggaagcaggagagtctagttttactt
catcctctttcctggtttttttttttttttaatctgatttgggctcttac
attcttctaaaaaaattcacatttttacttttatgttgctgttactcctt
ttgttttccccaaactcttcttgccttcaccacctggaacagtctatgta
tttcttcccttggcatctgttcccccaaattgcatggaggcaacggccag
tgaatcgcccctgggaggtgattttgggacgctcatccagtactcagagt
cgatttagacaaccacgtaggtgaacggcttgaccctgtcacttaggttt
gtccttcctttttacagttgagaagtattctgtggctctaggcttttgct
atcataaataaatctactcggaggacctggaacagatcttcccgtgttca
tgactgcttatttctctggctattagaatttctcattcatatcataaatg
tgtttaattttataagaaacattatatataatgtaatatatatacacata
tatatatatagtttcttacacatatgtatgaaagaaagtatgtagaaatt
agctttcatcaaattggctagtgcacattggcatgcactgtacatttaaa
gcaagtgtcaggttgagaatataaaaataacttctgatacagcatcttca
caacagattactgtgatatgttgtacactcaagtagaaagcaacaattaa
atgaagaa
gaattcagacccactggtgtttcaagggttgatggaaaccctgctgctga
ggttgggagaatgatacatccttacttggaaggctatgggagggacctac
ctaaactctggacaggacatttacactagaactcatgcaacatacaaaaa
gctctctgtggaaagatttcaaaatagattaagcaggggcagaaagccat
agtgttctaacgtatgtaggaagggaaaaaatgtgctttttaatacatac
atagatagaaatcgctcaccccactgtcacagagacgaggaacctggtgt
ctagggaaggatgggcagggcctgaactgtgtatggagcgacaatggagc
tggtgatgggttatgaaacttggtggttggattccaacctgcacatatcc
tttttcccccgccccaaactataaggagaagccttatacaaaaggttgaa
aatttgagaagcatattaacttgtcagttattagttgtctctgttttata
caattcatgtactttaagattttttcaagctttttaatttaactgagttt
atttccagcactgagctggggttgtctgcagatatatgtttgtagctacc
tagtgcagtacctcttggaaggaaagttttgaggaaatagcttttatccc
ttacagaaactttcactgttttcttttaaggtttccatgggtgaactacc
aggatggcaatctcaacatttccattccagtattttagtatccacggcaa
ccatgatgatcccacgggggtaattacaattctgttggaatcttaaaaat
gacattgaatgctatcagtacaatgcatctacctttttttctagtaatta
gcagtcaaattgagtatgaattcaaattaatttcttttcatttatgattt
tatatttcttgttggtttgttgtttttaatatggaataagaatgtacatg
agagagccatgcacttttttttttttttgcagtactgagggaaaagagga
gtcctgacactgccagcgatagctactggttccttttttattttggagac
aagaatctcactaagtcgcctaggcctggccttggaccctgtgaatttgc
ttcggcctttagacctgcaatttcgccctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_14749346_14750429
seq2: B6Ng01-077A02.b_45_1102 (reverse)

seq1  TTCTTCATTTTTATATGTTGCTTTCTTACTGTTGAGTTGTAACAACATAA  50
      |||||||  ||||  |||||||||| |||  ||||| ||| ||||||| |
seq2  TTCTTCA--TTTAATTGTTGCTTTC-TAC--TTGAG-TGT-ACAACAT-A  42

seq1  TCACAATGTAATTCTGTTGTTGAAGGATGCTGTATCAGGAGTTTTTTTTT  100
      |||||  |||| ||||||| |||| ||||||||||||| ||         
seq2  TCACA--GTAA-TCTGTTG-TGAA-GATGCTGTATCAGAAG---------  78

seq1  TTTTTTTTTTTTTCTCAACCTGGACACTTGCTTTAAATGTTACAGTGCAT  150
      || ||||| | |||||||||| ||||||||||||||||| ||||||||||
seq2  TTATTTTTATATTCTCAACCT-GACACTTGCTTTAAATG-TACAGTGCAT  126

seq1  GCCAATGTGCACTAGCCAATTTTGATGAAAGCTAATTTCTACATACTTTC  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCAATGTGCACTAGCCAA-TTTGATGAAAGCTAATTTCTACATACTTTC  175

seq1  TTTCATACATATGTGTAAGAAAACTATATATATATATGTGTATATATATT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTCATACATATGTGTAAG-AAACTATATATATATATGTGTATATATATT  224

seq1  ACATTATATATAATGTTTCTTATAAAATTAAACACATTTATGATATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATATATAATGTTTCTTATAAAATTAAACACATTTATGATATGAAT  274

seq1  GAGAAATTCTAATAGCCAGAGAAATAAGCAGTCATGAACACGGGAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTCTAATAGCCAGAGAAATAAGCAGTCATGAACACGGGAAGATC  324

seq1  TGTTCCAGGTCCTCCGAGTAGATTTATTTATGATAGCAAAAGCCTAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGGTCCTCCGAGTAGATTTATTTATGATAGCAAAAGCCTAGAGC  374

seq1  CACAGAATACTTCTCAACTGTAAAAAGGAAGGACAAACCTAAGTGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATACTTCTCAACTGTAAAAAGGAAGGACAAACCTAAGTGACAGG  424

seq1  GTCAAGCCGTTCACCTACGTGGTTGTCTAAATCGACTCTGAGTACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCCGTTCACCTACGTGGTTGTCTAAATCGACTCTGAGTACTGGAT  474

seq1  GAGCGTCCCAAAATCACCTCCCAGGGGCGATTCACTGGCCGTTGCCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTCCCAAAATCACCTCCCAGGGGCGATTCACTGGCCGTTGCCTCCA  524

seq1  TGCAATTTGGGGGAACAGATGCCAAGGGAAGAAATACATAGACTGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTGGGGGAACAGATGCCAAGGGAAGAAATACATAGACTGTTCCA  574

seq1  GGTGGTGAAGGCAAGAAGAGTTTGGGGAAAACAAAAGGAGTAACAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAAGGCAAGAAGAGTTTGGGGAAAACAAAAGGAGTAACAGCAAC  624

seq1  ATAAAAGTAAAAATGTGAATTTTTTTAGAAGAATGTAAGAGCCCAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTAAAAATGTGAATTTTTTTAGAAGAATGTAAGAGCCCAAATCA  674

seq1  GATTAAAAAAAAAAAAAAACCAGGAAAGAGGATGAAGTAAAACTAGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAAAAAAAAAAAACCAGGAAAGAGGATGAAGTAAAACTAGACTC  724

seq1  TCCTGCTTCCCCACCTGGGGAACATACTAAACACCCTACAGTTGATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCCCCACCTGGGGAACATACTAAACACCCTACAGTTGATTTTT  774

seq1  TTCCTGGAAGGTTCTTGTTCTAGAAGCTGTATTGATCAGCACTGTACCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAAGGTTCTTGTTCTAGAAGCTGTATTGATCAGCACTGTACCTT  824

seq1  CCCCGGTCATACTTTAGGAGGAATTCTTTATCTAGGAGATAAAATTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGTCATACTTTAGGAGGAATTCTTTATCTAGGAGATAAAATTGGCA  874

seq1  AAGCCAGGTAGGTTGGGGCAGGGTGTATACATAGCGTCCATCCCAACACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTAGGTTGGGGCAGGGTGTATACATAGCGTCCATCCCAACACC  924

seq1  GACACTTGTCTTAAAATAATGAGCCCCACAGATGGAAAACGTGCTACACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGTCTTAAAATAATGAGCCCCACAGATGGAAAACGTGCTACACT  974

seq1  GCTGTGAGCAGTATTGTGCTACAAACAAAACTCACTCCAGGGAGAAATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGCAGTATTGTGCTACAAACAAAACTCACTCCAGGGAGAAATTG  1024

seq1  ATATTTAGGAAACGTGTTTCATTCCTGTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGAAACGTGTTTCATTCCTGTGAATTC  1058

seq1: chr9_14599535_14600673
seq2: B6Ng01-077A02.g_67_1198

seq1  GAATTCAGACCCACTGGTGTTTCAAGGGTTGATGGAAACCCTGCTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCCACTGGTGTTTCAAGGGTTGATGGAAACCCTGCTGCTGA  50

seq1  GGTTGGGAGAATGATACATCCTTACTTGGAAGGCTATGGGAGGGACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAGAATGATACATCCTTACTTGGAAGGCTATGGGAGGGACCTAC  100

seq1  CTAAACTCTGGACAGGACATTTACACTAGAACTCATGCAACATACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCTGGACAGGACATTTACACTAGAACTCATGCAACATACAAAAA  150

seq1  GCTCTCTGTGGAAAGATTTCAAAATAGATTAAGCAGGGGCAGAAAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGTGGAAAGATTTCAAAATAGATTAAGCAGGGGCAGAAAGCCAT  200

seq1  AGTGTTCTAACGTATGTAGGAAGGGAAAAAATGTGCTTTTTAATACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTAACGTATGTAGGAAGGGAAAAAATGTGCTTTTTAATACATAC  250

seq1  ATAGATAGAAATCGCTCACCCCACTGTCACAGAGACGAGGAACCTGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGAAATCGCTCACCCCACTGTCACAGAGACGAGGAACCTGGTGT  300

seq1  CTAGGGAAGGATGGGCAGGGCCTGAACTGTGTATGGAGCGACAATGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAGGATGGGCAGGGCCTGAACTGTGTATGGAGCGACAATGGAGC  350

seq1  TGGTGATGGGTTATGAAACTTGGTGGTTGGATTCCAACCTGCACATATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGGGTTATGAAACTTGGTGGTTGGATTCCAACCTGCACATATCC  400

seq1  TTTTTCCCCCGCCCCAAACTATAAGGAGAAGCCTTATACAAAAGGTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCCGCCCCAAACTATAAGGAGAAGCCTTATACAAAAGGTTGAA  450

seq1  AATTTGAGAAGCATATTAACTTGTCAGTTATTAGTTGTCTCTGTTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGAAGCATATTAACTTGTCAGTTATTAGTTGTCTCTGTTTTATA  500

seq1  CAATTCATGTACTTTAAGATTTTTTCAAGCTTTTTAATTTAACTGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATGTACTTTAAGATTTTTTCAAGCTTTTTAATTTAACTGAGTTT  550

seq1  ATTTCCAGCACTGAGCTGGGGTTGTCTGCAGATATATGTTTGTAGCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCACTGAGCTGGGGTTGTCTGCAGATATATGTTTGTAGCTACC  600

seq1  TAGTGCAGTACCTCTTGGAAGGAAAGTTTTGAGGAAATAGCTTTTATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGTACCTCTTGGAAGGAAAGTTTTGAGGAAATAGCTTTTATCCC  650

seq1  TTACAGAAACTTTCACTGTTTTCTTTTAAGGTTTCCATGGGTGAACTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAACTTTCACTGTTTTCTTTTAAGGTTTCCATGGGTGAACTACC  700

seq1  AGGATGGCAATCTCAACATTTCCATTCCAGTA-TTTAGTATCCACGGCAA  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGATGGCAATCTCAACATTTCCATTCCAGTATTTTAGTATCCACGGCAA  750

seq1  CCATGATGATCCCACGGGGGTAATTACAATTCTGTTGGAATCTTAAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGATCCCACGGGGGTAATTACAATTCTGTTGGAATCTTAAAAAT  800

seq1  GACATTGAATGCTATCAGTACAATGCATCTACC-TTTTTTCTAGTAATTA  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACATTGAATGCTATCAGTACAATGCATCTACCTTTTTTTCTAGTAATTA  850

seq1  GCAGTCAAATTGAGTTATGAATTCAAATTAATTTCTTTTCATTTATGATT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAATTGAG-TATGAATTCAAATTAATTTCTTTTCATTTATGATT  899

seq1  TTATATTTCTTTGTTGGTTTGTTTGTTTTTTAATATGGAATAAGAATTGT  948
      ||||||||| |||||||||||||   |||||||||||||||||||||   
seq2  TTATATTTC-TTGTTGGTTTGTT--GTTTTTAATATGGAATAAGAAT--G  944

seq1  TACATGAGAGAGCCATGCACTTTTTTTTTTTTTTGCAGTACTGAAGGAAG  998
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TACATGAGAGAGCCATGCACTTTTTTTTTTTTTTGCAGTACTGAGGGAAA  994

seq1  AGAGGAGGTCTGACACATGCCAGGCGACAGCTACTGGTTTCCCTTTTTAT  1048
      |||||||  ||||||| ||||| |||| ||||||||| |||| |||||||
seq2  AGAGGAGTCCTGACAC-TGCCA-GCGATAGCTACTGG-TTCCTTTTTTAT  1041

seq1  TTT-GAGACAAG-ATCTCATTAAGTCGCCCAGG-CTGGCCTT-GAGCTTG  1094
      ||| |||||||| |||||| ||||||||| ||| |||||||| || | ||
seq2  TTTGGAGACAAGAATCTCACTAAGTCGCCTAGGCCTGGCCTTGGACCCTG  1091

seq1  TGATTCTGCTTCGGCCTTTAAGGACCTGCAATTACAGCCCCTGAT  1139
      ||| | ||||||||||||||  ||||||||||| |   |||||||
seq2  TGAATTTGCTTCGGCCTTTA--GACCTGCAATTTC--GCCCTGAT  1132