BAC Information

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BAC

Clone NameB6Ng01-077C10
Chromosome9 (Build37)
Map Location 3,622,357 - 3,623,575
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C10.bB6Ng01-077C10.g
ACCDH893203DH893204
length1,192801
definitionDH893203|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C10, 5' end.DH893204|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaggatcctgttgacgtatcttaccatgggatttttgttttt
gatacaataagctagagaactttcatatgactagatttaaaaataaactt
tatcttaataatggcctgtgactgagctattttaaaagaaataattcaat
aaaggaagatgaaaatcaaataatggcctgatgatgtttgctgaatgact
tttctatttataatgtattattggcaacaagaatcagctcaatggtatga
aatggccaattaacagatgacacattagcttggagaatgtaaaaaaaatg
tttaaatgagaattatatgtacagatataatttagcccagggaaatgttt
atgatgttacagctctggttccctgggaaacagatgctgagatggaaatt
tacaagtagaaagttgaacctcaggatcaatgatccaagcaggcaaacct
cattatgtttcaaggctagagactgggcggtccttcatggatctgagatt
tgttgtctgagtcatcttttgttttttcataagaagtaacacatgtactt
acctgagctggcctttctagagcatttcttttcacaaacttgagatgagt
gggaagttaagttgaactttccataattactgacaaacacaaagaagtga
agctttgtagttcaaatctttacctacaattagcttggtttcacttcaga
tttccttttgtggggcaggagcttaggtcagcttttagtttagatgtaga
caaaacccagagctgtttcacaagctaaaatacatagacacaaaaggttc
tatacccacaaaagccccctgatctaaaatagattttctatttatatctg
cactactctctgatttcttgctgagtcacaattctagtgatcttccaatc
acacaaacaccattttgtttttctttccattttctattgttgctatgctt
tatctattttacttaagtaagcatttatttagtgttgctttaataaattt
cgatttgtcttttaaatctagactgaaacaaagagtcatttgagctgttt
agatacttaaagatgtcagtaagagaggaggcagattgttcagttgttcc
aaaatatataacacagctagtccactgaatttaaggactagattttagct
cgatgagctgggaggaaattgtaattccgagccatggacttg

gaattctgtgaactgcttttatattctgattttgcagggtgttacagtaa
gaggttgtcttaagtctcaaaagaaactctaaattttggaactgtaaaat
gttgcactgtggtagactatgaggacatttgaagttgaaatgaatgcatt
tttttttgcattatgacatgtttgttagcctatggggaccagggaatgaa
ttgtggcaggttgaataagagtggcccccaatagattcatatctttgaaa
gcttatccatgagggagtagcactacttgagagggagtaggaagtgtacc
ttattggagtaaatgtggtctcattggtgtaaatatgtcaatggcagtgg
gttttgaagtttcaagggaccaagcaaagcccagtggctttccttcttct
taccacctgcagaagaactatatgtagaactctcaggtactttttcagta
ctatgtctgcctgcatgtcaccatgttcactaccaagatgacaacagagt
aaatctctgaaaatgtaattaaataagcagctaaataaatgctttctttt
acaaaattttcatgattgtgttgtctcttcacagtagtcaatcactgatt
gcagtactgggttatccatttttaaggattgacttaaaatgtggaaaaaa
atgatgacagggacgttgaacttaaataaagactaaattaggaaagttgc
cacccttacacacgtataactcattcaggaggattaagagtgtaacttag
gggtgggagtggggcatccacatggagaaatggtggggtggggaggaata
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_3622357_3623575
seq2: B6Ng01-077C10.b_49_1240

seq1  GAATTCTTTAGGATCCTGTTGACGTATCTTACCATGGGATTTTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGATCCTGTTGACGTATCTTACCATGGGATTTTTGTTTTT  50

seq1  GATACAATAAGCTAGAGAACTTTCATATGACTAGATTTAAAAATAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATAAGCTAGAGAACTTTCATATGACTAGATTTAAAAATAAACTT  100

seq1  TATCTTAATAATGGCCTGTGACTGAGCTATTTTAAAAGAAATAATTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAATAATGGCCTGTGACTGAGCTATTTTAAAAGAAATAATTCAAT  150

seq1  AAAGGAAGATGAAAATCAAATAATGGCCTGATGATGTTTGCTGAATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGATGAAAATCAAATAATGGCCTGATGATGTTTGCTGAATGACT  200

seq1  TTTCTATTTATAATGTATTATTGGCAACAAGAATCAGCTCAATGGTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTATAATGTATTATTGGCAACAAGAATCAGCTCAATGGTATGA  250

seq1  AATGGCCAATTAACAGATGACACATTAGCTTGGAGAATGTAAAAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCAATTAACAGATGACACATTAGCTTGGAGAATGTAAAAAAAATG  300

seq1  TTTAAATGAGAATTATATGTACAGATATAATTTAGCCCAGGGAAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAGAATTATATGTACAGATATAATTTAGCCCAGGGAAATGTTT  350

seq1  ATGATGTTACAGCTCTGGTTCCCTGGGAAACAGATGCTGAGATGGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTACAGCTCTGGTTCCCTGGGAAACAGATGCTGAGATGGAAATT  400

seq1  TACAAGTAGAAAGTTGAACCTCAGGATCAATGATCCAAGCAGGCAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTAGAAAGTTGAACCTCAGGATCAATGATCCAAGCAGGCAAACCT  450

seq1  CATTATGTTTCAAGGCTAGAGACTGGGCGGTCCTTCATGGATCTGAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTTTCAAGGCTAGAGACTGGGCGGTCCTTCATGGATCTGAGATT  500

seq1  TGTTGTCTGAGTCATCTTTTGTTTTTTCATAAGAAGTAACACATGTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGAGTCATCTTTTGTTTTTTCATAAGAAGTAACACATGTACTT  550

seq1  ACCTGAGCTGGCCTTTCTAGAGCATTTCTTTTCACAAACTTGAGATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCTGGCCTTTCTAGAGCATTTCTTTTCACAAACTTGAGATGAGT  600

seq1  GGGAAGTTAAGTTGAACTTTCCATAATTACTGACAAACACAAAGAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTAAGTTGAACTTTCCATAATTACTGACAAACACAAAGAAGTGA  650

seq1  AGCTTTGTAGTTCAAATCTTTACCTACAATTAGCTTGGTTTCACTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTAGTTCAAATCTTTACCTACAATTAGCTTGGTTTCACTTCAGA  700

seq1  TTTCCTTTTGTGGGGCAGGAGCTTAGGTCAGCTTTTAGTTTAGATGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTGTGGGGCAGGAGCTTAGGTCAGCTTTTAGTTTAGATGTAGA  750

seq1  CAAAACCCAGAGCTGTTTCACAAGCTAAAATACATAGACACAAAAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAGAGCTGTTTCACAAGCTAAAATACATAGACACAAAAGGTTC  800

seq1  TATACCCACAAAAGCCCCCTGATCTAAAATAGATTTTCTATTTATATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCACAAAAGCCCCCTGATCTAAAATAGATTTTCTATTTATATCTG  850

seq1  CACTACTCTCTGATTTCTTGCTGAGTCACAATTCTAGTGATCTTCCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTCTGATTTCTTGCTGAGTCACAATTCTAGTGATCTTCCAATC  900

seq1  ACACAAACACCATTTTGTTTTTCTTTTCCATTTTTCTATTGTTGCTATGC  950
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  ACACAAACACCATTTTGTTTTTC-TTTCCA-TTTTCTATTGTTGCTATGC  948

seq1  TTTATCTATTTTAACTTAAGGTTAAGCATTTATTTAGTGTTGCTTTTAAT  1000
      |||||||||||| |||||||  ||||||||||||||||||||| ||||||
seq2  TTTATCTATTTT-ACTTAAG--TAAGCATTTATTTAGTGTTGC-TTTAAT  994

seq1  AAATTTCGAATTTGTTCTTTTAAAATCTAAGACTTGAAAACAAAAGAGGT  1050
      |||||||| ||||| |||||| |||||| |||| |||||   ||||| ||
seq2  AAATTTCG-ATTTG-TCTTTT-AAATCT-AGAC-TGAAA--CAAAGA-GT  1036

seq1  CATTTGAGCTGTTTTAGGATACTTAAAGGATGTCAGTAAAGAGAGGAGGC  1100
      ||||||||||||||   |||||||||| ||||||||| ||||||||||||
seq2  CATTTGAGCTGTTT--AGATACTTAAA-GATGTCAGT-AAGAGAGGAGGC  1082

seq1  AGATTTGTTTCAGTTGTCACAGAATATATAACACAGCTAGTCCACTGAAT  1150
      |||||   |||||||||  || ||||||||||||||||||||||||||||
seq2  AGATT--GTTCAGTTGTTCCAAAATATATAACACAGCTAGTCCACTGAAT  1130

seq1  TTATAGGACTAGATTTTAGCTCAGATGAAAGCTGGATGAGTATTGTAATT  1200
      ||| |||||||||||||||||| ||||  ||||||  |   |||||||||
seq2  TTA-AGGACTAGATTTTAGCTC-GATG--AGCTGGGAGGAAATTGTAATT  1176

seq1  TCTGGAGGCAATGGACTTG  1219
       |  || || |||||||||
seq2  CC--GA-GCCATGGACTTG  1192


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