BAC Information

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BAC

Clone NameB6Ng01-077C19
Chromosome9 (Build37)11 (Build37)
Map Location 120,875,823 - 120,876,62884,554,987 - 84,555,217
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTtc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1
Downstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C19.bB6Ng01-077C19.g
ACCDH893220DH893221
length807497
definitionDH893220|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C19, 5' end.DH893221|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,875,823 - 120,876,628)(84,554,987 - 84,555,217)
sequence
gaattccatgcctttccacttgattgtggcaactaaggtgggattcgtgt
ccctcattttcaggaggagcctgaggacttgggggtacatggatcctaag
ctggatctggcgcctccactgagaccctcttcctggtgtgtcagaaacgt
ggttacttagagaaccgcacataaggatggctgtctcaaatggcgattgt
ggcatcctggtggtgagagtaagcacaggcttacagtctgtgacctgtcc
aggtctgctcactgctcacacagccacccacagcctcgaggggggctgca
tacacatgtggtgcacgcagaggctgtgctgcttcctgaagtcacaccat
aagctgcaatgaaattgcctttacccccaagcctgcctaggaagcacaaa
tgggaaactacagggacaactaagtgcccaggagagaggaccatgatgcc
agcctttgtggagggtggagaggctgtgacatgctgtctttaggacatga
cactgcagccatcaattctcagcacttgtcacctgggcaaggacagggta
gagaggggaggtgctcagtgctccatagaagaggggaggtgctctcagtg
ctccatagagaggggaaggtgctccatagagaggggacgggatggctgct
gtgggagggagaaacattctttatgtcctatgaaccagtggatggtcgca
cacctgagcacataaggacagcactaacgtgacctaatgggtttttaaag
gatagagttgggcagggactatgctgggggatgtgggagaagttggatgg
gaggagg
tttgtttaaatctgtaccccatcttaaaattgggttatttggtttattga
tgtctcaagttctttatatattttggacattagctctctatctgatgttg
agttagtgaaaatcttttcccaatctgtaggctgccattctgtcccgttg
acattgtcctttgcctcaccgaagcttttcagtttaatgaggtcccattt
attaattgttgatcttagtgcctgagctatgggtgttctatttaggaagt
tgtctcccttgccagtgcattcaaggctattccctaatttctcttctcct
ctgttaggttctgtattagggttttctagagtcacagaacttatagaatg
aatctctctctctctctctctaacacacacacacacatacatatatatgt
gtgtatatatatatacatatatatgtacatatatatactctttcatatat
gtgcacacacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120875823_120876628
seq2: B6Ng01-077C19.b_48_854

seq1  GAATTCCATGCCTTTCCACTTGATTGTGGCAACTAAGGTGGGATTCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTTTCCACTTGATTGTGGCAACTAAGGTGGGATTCGTGT  50

seq1  CCCTCATTTTCAGGAGGAGCCTGAGGACTTGGGGGTACATGGATCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTTTCAGGAGGAGCCTGAGGACTTGGGGGTACATGGATCCTAAG  100

seq1  CTGGATCTGGCGCCTCCACTGAGACCCTCTTCCTGGTGTGTCAGAAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTGGCGCCTCCACTGAGACCCTCTTCCTGGTGTGTCAGAAACGT  150

seq1  GGTTACTTAGAGAACCGCACATAAGGATGGCTGTCTCAAATGGCGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTAGAGAACCGCACATAAGGATGGCTGTCTCAAATGGCGATTGT  200

seq1  GGCATCCTGGTGGTGAGAGTAAGCACAGGCTTACAGTCTGTGACCTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTGGTGGTGAGAGTAAGCACAGGCTTACAGTCTGTGACCTGTCC  250

seq1  AGGTCTGCTCACTGCTCACACAGCCACCCACAGCCTCGAGGGGGGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCTCACTGCTCACACAGCCACCCACAGCCTCGAGGGGGGCTGCA  300

seq1  TACACATGTGGTGCACGCAGAGGCTGTGCTGCTTCCTGAAGTCACACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTGGTGCACGCAGAGGCTGTGCTGCTTCCTGAAGTCACACCAT  350

seq1  AAGCTGCAATGAAATTGCCTTTACCCCCAAGCCTGCCTAGGAAGCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAATGAAATTGCCTTTACCCCCAAGCCTGCCTAGGAAGCACAAA  400

seq1  TGGGAAACTACAGGGACAACTAAGTGCCCAGGAGAGAGGACCATGATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACTACAGGGACAACTAAGTGCCCAGGAGAGAGGACCATGATGCC  450

seq1  AGCCTTTGTGGAGGGTGGAGAGGCTGTGACATGCTGTCTTTAGGACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGTGGAGGGTGGAGAGGCTGTGACATGCTGTCTTTAGGACATGA  500

seq1  CACTGCAGCCATCAATTCTCAGCACTTGTCACCTGGGCAAGGACAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCCATCAATTCTCAGCACTTGTCACCTGGGCAAGGACAGGGTA  550

seq1  GAGAGGGGAGGTGCTCAGTGCTCCATAGAAGAGGGGAGGTGCTCTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAGGTGCTCAGTGCTCCATAGAAGAGGGGAGGTGCTCTCAGTG  600

seq1  CTCCATAGAGAGGGGAAGGTGCTCCATAGAGAGGGGACGGGATGGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGAGAGGGGAAGGTGCTCCATAGAGAGGGGACGGGATGGCTGCT  650

seq1  GTGGGAGGGAGAAACATTCTTTATGTCCTATGAACCAGTGGATGGTCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGGAGAAACATTCTTTATGTCCTATGAACCAGTGGATGGTCGCA  700

seq1  CACCTGAGCACATAAGGACAGCACTAACGTGACCTAATGGGTTTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCACATAAGGACAGCACTAACGTGACCTAATGGGTTTTTAAAG  750

seq1  GATAGAGTTGGGCAGGGACTATGCTGGGGGATGTGGGAGAAGTTGGAT-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATAGAGTTGGGCAGGGACTATGCTGGGGGATGTGGGAGAAGTTGGATGG  800

seq1  GAGGAGG  806
      |||||||
seq2  GAGGAGG  807

seq1: chr11_84554987_84555217
seq2: B6Ng01-077C19.g_446_570

seq1  ACACACACACACACATATGTGTGTGTATATATATATATCTATATACACAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATATATATATACACACACATATATATACACACACACATATATAT  100
                      ||||||||        ||||||| ||||||||||
seq2  ----------------ACACACAC--------ACACACATACATATATAT  26

seq1  ACACACATATACACCATACACACACACACATATATACATATATATACATA  150
            ||||                   ||||||||||||||||   ||
seq2  GTGTGTATAT-------------------ATATATACATATATAT--GTA  55

seq1  CACATATATACCATATACACACATGTATATGTATGTATATATATATGTGT  200
      || ||||||||  |           |  || |||||  | | | ||||||
seq2  CATATATATACTCT-----------TTCATATATGTGCACACACATGTGT  94

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  231
      |||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  125