BAC Information

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BAC

Clone NameB6Ng01-077H14
Chromosome9 (Build37)
Map Location 67,712,853 - 67,879,007
singlet/doubletdoublet
Overlap geneVps13c
Upstream geneRab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077H14.bB6Ng01-077H14.g
ACCDH893436DH893437
length986975
definitionDH893436|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H14, 5' end.DH893437|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,712,853 - 67,713,840)(67,878,028 - 67,879,007)
sequence
gaattcatctgttgctgctgtgtctgctagcttctgggtgattttgaggc
actatgctcttatatgttgctgaaaatggaactctgatatcaggcaattt
gaattgggcaagaaggtgtttgttcaatgatgaacaggaaaaagtgctaa
gtctcatcaacaatgcacaggtagagtgctaggagacttcagaatgggat
gacactgttaagttgtgcagatcagtgtgttctgtgaacatggaagagag
aaggaaagagttctccaggtcggggaggcagggtagacagggtagaaaaa
cccagagcacatgtggggaacagctggaagttaaggggagagagagagag
acagacagacagacagacccagagacacacagagagagtgaaagatggag
agacagatagacagagagatggagagactgagagacagagagagagattg
gttgcatgtacggttgggaaactaggtgagattactttcaagacatttga
atgaccgggcgatgaggtcaaggaccacgtttgccagtgcaaaggtgaac
tttagcctccagcggctgaggagggggagttcataacctttctttgaagt
ctgaagttgcagtctgggctgggcttccttagggagagaagtgggagagg
gagttgtctagccatattgactcgagtgagtaaagtctgcgggcagcttg
tctgcaaggaacaagttacacagtgaactgagaggagactttctcatctg
actttaatgtgagtggcgcgcatcatgggaacataatgaaagtgggccac
aggacatgcatgaggagaacccagatggcagatttgtgttgtgtttgaaa
attcgagatgacactgagacccaagccgtcaatgctctcacctgccttgc
ccaatttgattgttacactttcacaatgggagttctgtttgaatataata
cgaatgttcatctgttggaaagaatgtttctttggg
gaattcagcctccatcaaattctgaaagagacttatgacccaaacaggct
aacgataagtaggataggcattgaaacatgttggaaggttgtaagccagt
aagaccaaggtaacatgcagtaccgtggatcctgttggcatatgacaaca
gggaccttggctctttttctctcatatgagaccctaatatatatcattag
gcttgctccatggaggccttccagaatccaaacacagcttggagtcattc
gtcaatgcggtgcactgacagagcatgaggcaggaggagagcttgccaaa
tgttggtatacaatgaaagcaatctcataactgaacattaaacatcaccg
atgaaacagagaagatgggaagcatttggtgatgtctgcctggatgtgac
cagtgtgaggagaatgctgggtggcagtggtacaggtgggctggacctta
cagacaagatctgagctggagctggagatacaaaaattagcacacaaaag
ggttgaaactcaacacaggcaattagaaggagagtgtaagtcacatgata
aagactcttacacatgacgaattcttgatcccttattgtctctctcttct
gctaggctaggacttcttgagatgcatgaactatagtttatagttatcag
aattgcccctccatagaaatgatgaggtatttattcatgactcagtcatt
agctattgagtatctagagtgtagcaggctcggccctcagattttggaca
aaatcagtaatatataagcaaacagatttttaagacaagaaagagaaaga
cttggatctcatagtccctacctatgatggcaaaaatgtctcagagatcc
cgaagttcttttctacctgtgtgtgtaagagttaccagagatgactgaag
agggatgacccacgctcatatggggagtcactatcccatagactgcaggc
cctatggaataagcaaggaaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67712853_67713840
seq2: B6Ng01-077H14.b_41_1026

seq1  GAATTCAGCTGTTGCATGCTGTGTCTGCTAGCTTCTGGGTGATTTTGAGG  50
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTTGC-TGCTGTGTCTGCTAGCTTCTGGGTGATTTTGAGG  49

seq1  CACTATGCTCTTATATGTTGCTGAAAATGGAACTCTGATATCAGGCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCTCTTATATGTTGCTGAAAATGGAACTCTGATATCAGGCAATT  99

seq1  TGAATTGGGCAAGAAGGTGTTTGTTCAATGATGAACAGGAGAAAGTGCTA  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAATTGGGCAAGAAGGTGTTTGTTCAATGATGAACAGGAAAAAGTGCTA  149

seq1  AGTCTCATCAACAATGCACAGGTAGAGTGCTAGGAGACTTCAGAATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATCAACAATGCACAGGTAGAGTGCTAGGAGACTTCAGAATGGGA  199

seq1  TGACACTGTTAAGTTGTGCAGATCAGTGTGTTCTGTGAACATGGAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTTAAGTTGTGCAGATCAGTGTGTTCTGTGAACATGGAAGAGA  249

seq1  GAAGGAAAGAGTTCTCCAGGTCGGGGAGGCAGGGTAGACAGGGTAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAGTTCTCCAGGTCGGGGAGGCAGGGTAGACAGGGTAGAAAA  299

seq1  ACCCAGAGCACATGTGGGGAACAGCTGGAAGTTAAGGGGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCACATGTGGGGAACAGCTGGAAGTTAAGGGGAGAGAGAGAGA  349

seq1  GACAGACAGACAGACAGACACAGAGACACACAGAGAGAGTGAAAGATGGA  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGACAGACCCAGAGACACACAGAGAGAGTGAAAGATGGA  399

seq1  GAGACAGAGAGACAGAGAGATAGAGAGACAGAGAGACAGAGAGAGAGATT  450
      |||||||| |||||||||||| ||||||| ||||||||||||||||||||
seq2  GAGACAGATAGACAGAGAGATGGAGAGACTGAGAGACAGAGAGAGAGATT  449

seq1  GGTTGCATGTACGGTTGGGAAACTAGGTGAGATTACTTTAAAGAGATTTG  500
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  GGTTGCATGTACGGTTGGGAAACTAGGTGAGATTACTTTCAAGACATTTG  499

seq1  AATGACCGGGCGATGAGGTCAAGGACCACGTTTGCCAGTGCAAAGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCGGGCGATGAGGTCAAGGACCACGTTTGCCAGTGCAAAGGTGAA  549

seq1  CTTTAGCCTCCAGCGGCTGAGGAGGGGGAGTTCATAACCTTTCTTTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCTCCAGCGGCTGAGGAGGGGGAGTTCATAACCTTTCTTTGAAG  599

seq1  TCTGAAGTTGCAGTCTGGGCTGGGCTTCCTTAGGGAGAGAAGTGGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTTGCAGTCTGGGCTGGGCTTCCTTAGGGAGAGAAGTGGGAGAG  649

seq1  GGAGTTGTCTAGCCATATTGACTCGAGTGAGTAAAGTCTGCGGGCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTCTAGCCATATTGACTCGAGTGAGTAAAGTCTGCGGGCAGCTT  699

seq1  GTCTGCAAGGAACAAGTTACACAGTGAACTAAGAGGAGACTTTCTCATCT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCTGCAAGGAACAAGTTACACAGTGAACTGAGAGGAGACTTTCTCATCT  749

seq1  GACTTTAAAGTTAGTGGCACGCATCATGGGAACATAATGAAAGTGGGCCA  800
      |||||||| || |||||| |||||||||||||||||||||||||||||||
seq2  GACTTTAATGTGAGTGGCGCGCATCATGGGAACATAATGAAAGTGGGCCA  799

seq1  CAGGACAGGCAGGAGGAGAACCCAGATGGCAGATTTGTGTTGTGTTTGAA  850
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGCATGAGGAGAACCCAGATGGCAGATTTGTGTTGTGTTTGAA  849

seq1  AATTCGAGATGACACTGAGACCCAAGCCGTCAATGCTCTTTACCTGCCTT  900
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  AATTCGAGATGACACTGAGACCCAAGCCGTCAATGCTC-TCACCTGCCTT  898

seq1  GCCCAATTTGATTGTTACAACTTTCACAATGGGAGTTTTGTTTGAATATA  950
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GCCCAATTTGATTGTTAC-ACTTTCACAATGGGAGTTCTGTTTGAATATA  947

seq1  AAAGGAAGGTTTATATGTT-GAAAGAATGTTTCCTTGGG  988
      | | ||| ||| || |||| ||||||||||||| |||||
seq2  ATACGAATGTTCATCTGTTGGAAAGAATGTTTCTTTGGG  986

seq1: chr9_67878028_67879007
seq2: B6Ng01-077H14.g_66_1040 (reverse)

seq1  CCTTTTTCCTTCTTTATTCCATATGGGCCTCCAGTCTATGGGATAGTGAC  50
      |||||||||||  |||||||||| |||||| |||||||||||||||||||
seq2  CCTTTTTCCTTGCTTATTCCATA-GGGCCTGCAGTCTATGGGATAGTGAC  49

seq1  TCCCATCCTGAGCGTGGGTCATCCCTCTTCAGTCCTCTCTGGAAACACCT  100
      ||||    |||||||||||||||||||||||||| ||||||| |||  ||
seq2  TCCCCATATGAGCGTGGGTCATCCCTCTTCAGTCATCTCTGGTAAC-TCT  98

seq1  TACACACACAGGTAGAAAGGAACTTCACTGATCTCTGAGACAATATTAGC  150
      |||||||||||||||||| |||||||   |||||||||||| || || ||
seq2  TACACACACAGGTAGAAAAGAACTTC-GGGATCTCTGAGAC-ATTTTTGC  146

seq1  CATCATAGGTAGGGACTATGAGATCCAAGTCTTTCTCTTTTCTTGTTTTA  200
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  CATCATAGGTAGGGACTATGAGATCCAAGTCTTTCTC-TTTCTTGTCTTA  195

seq1  AAAATTTGTTTGCTTATATATTACTGATTTTGTCCAAAGGCCTAGGGCCG  250
      ||||| ||||||||||||||||||||||||||||||||  |  |||||||
seq2  AAAATCTGTTTGCTTATATATTACTGATTTTGTCCAAAATCTGAGGGCCG  245

seq1  AGCCTGCTACACTCTAGATACTCAATAGCTAATGAGTGAGTCATGAATAA  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCCTGCTACACTCTAGATACTCAATAGCTAATGACTGAGTCATGAATAA  295

seq1  ATACCTCATCATTTCTATGGAGGGGAAATTCTGATAACTATAAACTATAG  350
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATACCTCATCATTTCTATGGAGGGGCAATTCTGATAACTATAAACTATAG  345

seq1  TTCATGCCTTTCAAGAAGTCCTAGCCTAGCAGAAGAGAGAGACAATAAGG  400
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCATCTCAAGAAGTCCTAGCCTAGCAGAAGAGAGAGACAATAAGG  395

seq1  GATCAAGAATTCCTCATGTGTACGAGTCTTTATCATGTGACTTACACTAT  450
      |||||||||||| ||||||||| ||||||||||||||||||||||||| |
seq2  GATCAAGAATTCGTCATGTGTAAGAGTCTTTATCATGTGACTTACACTCT  445

seq1  CCTTCTTATTGCCTGTGTTGAGTTTCAACCCTTTTGTGTGCTAATTTTTG  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAATTGCCTGTGTTGAGTTTCAACCCTTTTGTGTGCTAATTTTTG  495

seq1  TATCTCCAGCTCCAGCTCAGATCTTGTCTCTAAGGTCCAGCCCACCTGTA  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATCTCCAGCTCCAGCTCAGATCTTGTCTGTAAGGTCCAGCCCACCTGTA  545

seq1  CCACTGCCACCCAGCATTCTCCTCACACTGGTCACATCCAGGCAGACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCACCCAGCATTCTCCTCACACTGGTCACATCCAGGCAGACATC  595

seq1  ACCAAATGCTTCCCATCTTCTCTGTTTCATCGGTGATGTTTAATGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCAAATGCTTCCCATCTTCTCTGTTTCATCGGTGATGTTTAATGTTCAG  645

seq1  CTATGAGATTGCTTTCATTCTATACCAACATTTGGCAAGCTCTCCTCCTG  700
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATGAGATTGCTTTCATTGTATACCAACATTTGGCAAGCTCTCCTCCTG  695

seq1  CCTCCTGCTCTGTCAGTGCACCGCATTGACGACTGACTCCAAGCTGTCTT  750
      |||| ||||||||||||||||||||||||||| |||||||||||||| ||
seq2  CCTCATGCTCTGTCAGTGCACCGCATTGACGAATGACTCCAAGCTGTGTT  745

seq1  TTGACTCTGGAAGGCCTCCATGGAGCAAGCCTACTGATATATACTAGGGT  800
      | || |||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGGATTCTGGAAGGCCTCCATGGAGCAAGCCTAATGATATATATTAGGGT  795

seq1  CTCATCTGAGAGAAAAAGAGCCAAGGTCCCTGTTCTCATATGCCAACAGG  850
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCATATGAGAGAAAAAGAGCCAAGGTCCCTGTTGTCATATGCCAACAGG  845

seq1  ATCCACGCTACTGCATGTTACCTTGGTCTTACTGGCTTACAACCTTCCAA  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGGTACTGCATGTTACCTTGGTCTTACTGGCTTACAACCTTCCAA  895

seq1  CATGTTTCAATGCCTATCCTACTTATCGTTAGCCTGTTTGGGTCATAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCAATGCCTATCCTACTTATCGTTAGCCTGTTTGGGTCATAAGT  945

seq1  CTCTTTCAGAATTTGATGGAGGCTGAATTC  980
      ||||||||||||||||||||||||||||||
seq2  CTCTTTCAGAATTTGATGGAGGCTGAATTC  975