BAC Information

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BAC

Clone NameB6Ng01-077J03
Chromosome9 (Build37)
Map Location 38,209,533 - 38,210,741
singlet/doubletsinglet
Overlap geneOlfr147
Upstream geneRobo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900
Downstream geneOlfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J03.bB6Ng01-077J03.g
ACCDH893509DH893510
length1,2041,150
definitionDH893509|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J03, 5' end.DH893510|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctcagagacaaagttaatcagcattttggggctgaagacaga
agagtaacagagatcaatgaaggagaggttgaagaggaaatagtacatgg
gggtgtgcaggtgaggattgaggccaatcaggatgatcaagcccaagttt
cccaccactgtgattatgtagattattagaaacaggtaaaagagaggcag
ctggagctctggacgatctgtcaaaccagcaaggacaaattctgtcacag
aagagccatttccagccagcatgcttatcattgaaaatctagatgagaag
agaattttgttaatggatgggccatttccacagttttaccatcagcagaa
tttagcaccatggacaaatttatgctttgtcatctgaatatattatcaca
ttctcccattatgacaaatatcagttagcccatgcttattcttataacct
gaatactacaataacattcttctatccttgcctcaacctattgaggtagt
gtgcctgacatgcatgcctattcattaattaacttaggtagtgggatgtg
atttacagtctcttcagtctggtccttcaaatcccattctttcattgcat
tagacatcctacttcttttgtgatgttcataaagagtgagttctggtagg
aatcagccatacagatatacagtatgtgaggtttccatagtgctcactac
tatactctatgaagctagcaattgatagcaggtgtggacgatgtccacag
tagctcaagatttatcttttaataatttaatatctaattatattcttcac
tgtttctttacattttcttctactctatcctaacttcaaacagggatgga
gaaaggttttactttcaaaggtttacaaaggcataaaaacgaaaatagta
attaatgtgggtatggttttcatttatgatacatattttaatgctcaaac
tatatgcttattatatataacttctttctgtagatggcaccttagtattt
ttgtttaaataaacacctactcctgctgtgggtagctttgtatttcatgt
ggtcacccagaaaatatataacttgtctttctatttggaccaaagaggaa
atacataccagcacaacagaatctggagctctgtctactgatccatgttg
ttggtgtgtggctttcattaataaatactctcttttgcacagaagaaatg
tgca
gaattctcacctgaggaataccgaatggcagagaagcaccttaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatacccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccat
ggaggagctagagaagtacccaagagctaaaggatcttcacccttatagt
ggacacatatgaactaccagtaccctgagctctgactctagctgcaatgt
atcaaaagatgctagtcgcatcactggaagagagccattgacacgcaaac
ttgtgttgcctgtacaggaacgccagtctaaagggggggatgtgatcatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38209533_38210741
seq2: B6Ng01-077J03.b_46_1249 (reverse)

seq1  TGCA-ATTTCTTCTGTGTGCAAAAAAGAGAGTATTTATTATATTGAAAAG  49
      |||| ||||||||||||     ||||||||||||||||  || |||||  
seq2  TGCACATTTCTTCTGTG----CAAAAGAGAGTATTTAT--TAATGAAAGC  44

seq1  CAAACAACAACAAACAATGGATCAGTAGTACAGAGCT-CAGATTCTGTTG  98
      || ||| ||||||   |||||||||||| |||||||| ||||||||||||
seq2  CACACACCAACAA--CATGGATCAGTAG-ACAGAGCTCCAGATTCTGTTG  91

seq1  TTGCCTGTATGTATTTCCTCTTTGGT-CAAATAGAAAGACAAG-TATAAT  146
       |||  |||||||||||||||||||| |||||||||||||||| ||||  
seq2  -TGCTGGTATGTATTTCCTCTTTGGTCCAAATAGAAAGACAAGTTATATA  140

seq1  ATTTCTGGGTGA-CACATGAAATACAAAGCTA-CCACAGCAGGGAGTAGG  194
       ||||||||||| ||||||||||||||||||| |||||||| ||||||||
seq2  TTTTCTGGGTGACCACATGAAATACAAAGCTACCCACAGCA-GGAGTAGG  189

seq1  TGTTTATTTTAAACAAAATACTAAGGTGCCATCTACAGAAAGAAGTTATA  244
      ||||||||| ||  ||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTAAACAAAAATACTAAGGTGCCATCTACAGAAAGAAGTTATA  239

seq1  TATAATAAGCATATAGTTTGAGCATTAAAATATGTATCATAAATGAAAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAGCATATAGTTTGAGCATTAAAATATGTATCATAAATGAAAAC  289

seq1  CATACCCACATTAATTACTATTTTCGTTTTTATGCCTTTGTAAACCTTTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCACATTAATTACTATTTTCGTTTTTATGCCTTTGTAAACCTTTG  339

seq1  AAAGTAAAACCTTTCTCCATCCCTGTTTGAAGTTAGGATAGAGTAGAAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACCTTTCTCCATCCCTGTTTGAAGTTAGGATAGAGTAGAAGA  389

seq1  AAATGTAAAGAAACAGTGAAGAATATAATTAGATATTAAATTATTAAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAGAAACAGTGAAGAATATAATTAGATATTAAATTATTAAAAG  439

seq1  ATAAATCTTGAGCTACTGTGGACATCGTCCACACCTGCTATCAATTGCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTGAGCTACTGTGGACATCGTCCACACCTGCTATCAATTGCTA  489

seq1  GCTTCATAGAGTATAGTAGTGAGCACTATGGAAACCTCACATACTGTATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGAGTATAGTAGTGAGCACTATGGAAACCTCACATACTGTATA  539

seq1  TCTGTATGGCTGATTCCTACCAGAACTCACTCTTTATGAACATCACAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGGCTGATTCCTACCAGAACTCACTCTTTATGAACATCACAAAA  589

seq1  GAAGTAGGATGTCTAATGCAATGAAAGAATGGGATTTGAAGGACCAGACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGATGTCTAATGCAATGAAAGAATGGGATTTGAAGGACCAGACT  639

seq1  GAAGAGACTGTAAATCACATCCCACTACCTAAGTTAATTAATGAATAGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTGTAAATCACATCCCACTACCTAAGTTAATTAATGAATAGGC  689

seq1  ATGCATGTCAGGCACACTACCTCAATAGGTTGAGGCAAGGATAGAAGAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCAGGCACACTACCTCAATAGGTTGAGGCAAGGATAGAAGAAT  739

seq1  GTTATTGTAGTATTCAGGTTATAAGAATAAGCATGGGCTAACTGATATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTAGTATTCAGGTTATAAGAATAAGCATGGGCTAACTGATATTT  789

seq1  GTCATAATGGGAGAATGTGATAATATATTCAGATGACAAAGCATAAATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATGGGAGAATGTGATAATATATTCAGATGACAAAGCATAAATTT  839

seq1  GTCCATGGTGCTAAATTCTGCTGATGGTAAAACTGTGGAAATGGCCCATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGTGCTAAATTCTGCTGATGGTAAAACTGTGGAAATGGCCCATC  889

seq1  CATTAACAAAATTCTCTTCTCATCTAGATTTTCAATGATAAGCATGCTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAAAATTCTCTTCTCATCTAGATTTTCAATGATAAGCATGCTGG  939

seq1  CTGGAAATGGCTCTTCTGTGACAGAATTTGTCCTTGCTGGTTTGACAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGGCTCTTCTGTGACAGAATTTGTCCTTGCTGGTTTGACAGAT  989

seq1  CGTCCAGAGCTCCAGCTGCCTCTCTTTTACCTGTTTCTAATAATCTACAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGAGCTCCAGCTGCCTCTCTTTTACCTGTTTCTAATAATCTACAT  1039

seq1  AATCACAGTGGTGGGAAACTTGGGCTTGATCATCCTGATTGGCCTCAATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTGGTGGGAAACTTGGGCTTGATCATCCTGATTGGCCTCAATC  1089

seq1  CTCACCTGCACACCCCCATGTACTATTTCCTCTTCAACCTCTCCTTCATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGCACACCCCCATGTACTATTTCCTCTTCAACCTCTCCTTCATT  1139

seq1  GATCTCTGTTACTCTTCTGTCTTCAGCCCCAAAATGCTGATTAACTTTGT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTTACTCTTCTGTCTTCAGCCCCAAAATGCTGATTAACTTTGT  1189

seq1  CTCTGAGAAGAATTC  1209
      |||||||||||||||
seq2  CTCTGAGAAGAATTC  1204