BAC Information

Click to search

BAC

Clone NameB6Ng01-077L23
Chromosome9 (Build37)
Map Location 61,244,371 - 61,402,688
singlet/doubletdoublet
Overlap geneTle3, LOC100039851
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481
Downstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077L23.bB6Ng01-077L23.g
ACCDH893640DH893641
length7421,141
definitionDH893640|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L23, 5' end.DH893641|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,244,371 - 61,245,112)(61,401,546 - 61,402,688)
sequence
gaattcaattaaagcccacgagtggggcctgtgacccccattttcaaggt
aattgcttctcaggctctgagtgaatgcggccgtcgccctgtcattaggc
aggcagccgtctaatcgctgcgcgcctgacagagcctcacaaggcaggaa
ttgctgacagctggggcacccagactggggagctgtgcttgactgccctc
cagcgaggggccttgttccttttcttctggaggcgagaggggagccaccc
tgctgagataagggcacaggcaggggcagtgctccagtcttgattttctc
agatagaaaggtttctagtggcacatctgctccagttggctgatcgtggc
ctcctgacacagggctggagtctggggtctccatttagctgggctgctag
caatatgaggagtgtggatgtaaccagaagcatgtcacggggttgaaata
ttgtgggagaacagaaggataggtgaaaggacctgggctgctggccatcc
ctgtcccctagttcccagtttgtccttagggaactcatgtccctttgggt
aagataggcctagagatggtgttcctttttagaacttagctttgtacata
caggattgtgtggtggcctgggaggtggtggactcttggctccttggtct
gggttgcctggagaattatttagtgggtggtatgtgcagtgttgacttgg
tggttttcttaagaggggagaagagacgggaggagggaggtt
gaattccctccccgctcccatgaactccagtatgactcagtggctgacag
agggaaggacaaacatcaatagccttgcgtagtcagagcagctggggttg
tcgcttttcagaaatagctaatctggaagactctccagaggctgagatca
ttccaagagatgccaactcgaattccttcctacagtccagtccctgttca
ggcacccagaacattctctggacgtttgcagaatggagtctttcagtgac
ctcaccagaggccacccttcccctctgttccctatcccaaaatgatgtcc
cttcctcgaatagtgagccggcctacttgacttctgttcttccctcccct
acccctttgtgtgtatgtgcttatgtgcaagtgtgtatgcatgtgtgtgt
gtacatggatgacggagccagagaacagtttcagctgccattcctcaaag
gttgtccatcttgttttcgagacaactcttgcttggcctgggactcagca
agtagactaacctggatggccagtaagcatcagcacctgccgtcctcccc
agcatttacagaggaccagactcgggtccctcaagctttgtaaggcttta
ctgtctaaactatttctgcagctacattttaactcctctcctaggaggtt
ataaacccaataatgggcctggcaacgtagctcagtggataaagacacct
gctccaggcctgatgtcttaagttcaatcctgaaaaccctgatggtagaa
ggagagaaccggcttccaaaagttgtcttctgacctccatgtgtataccg
tggcatgtgtgtgctgcccctgacacatgcataaattaattaatgcaata
aaaaattaaagatcaataataatcagaagagtgagcctgacattttacta
aaacaatagcattgaaaggccaaagggcttcatgttgacaagacagaggc
cacactgagcgcattagctgccagcagatggagctgtaactgtgcccagc
tgacaacagctgcatacaaagcaggccattcacactaacaagttttagaa
ttcttataggtgtgttaacttggactccttgggggatgtttgtctagtcc
acggatgcctggccaaccttcgcgggcaaggggctgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_61244371_61245112
seq2: B6Ng01-077L23.b_47_788

seq1  GAATTCAATTAAAGCCCACGAGTGGGGCCTGTGACCCCCATTTTCAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAGCCCACGAGTGGGGCCTGTGACCCCCATTTTCAAGGT  50

seq1  AATTGCTTCTCAGGCTCTGAGTGAATGCGGCCGTCGCCCTGTCATTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTCTCAGGCTCTGAGTGAATGCGGCCGTCGCCCTGTCATTAGGC  100

seq1  AGGCAGCCGTCTAATCGCTGCGCGCCTGACAGAGCCTCACAAGGCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCGTCTAATCGCTGCGCGCCTGACAGAGCCTCACAAGGCAGGAA  150

seq1  TTGCTGACAGCTGGGGCACCCAGACTGGGGAGCTGTGCTTGACTGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACAGCTGGGGCACCCAGACTGGGGAGCTGTGCTTGACTGCCCTC  200

seq1  CAGCGAGGGGCCTTGTTCCTTTTCTTCTGGAGGCGAGAGGGGAGCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGGGGCCTTGTTCCTTTTCTTCTGGAGGCGAGAGGGGAGCCACCC  250

seq1  TGCTGAGATAAGGGCACAGGCAGGGGCAGTGCTCCAGTCTTGATTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATAAGGGCACAGGCAGGGGCAGTGCTCCAGTCTTGATTTTCTC  300

seq1  AGATAGAAAGGTTTCTAGTGGCACATCTGCTCCAGTTGGCTGATCGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAAGGTTTCTAGTGGCACATCTGCTCCAGTTGGCTGATCGTGGC  350

seq1  CTCCTGACACAGGGCTGGAGTCTGGGGTCTCCATTTAGCTGGGCTGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACACAGGGCTGGAGTCTGGGGTCTCCATTTAGCTGGGCTGCTAG  400

seq1  CAATATGAGGAGTGTGGATGTAACCAGAAGCATGTCACGGGGTTGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAGGAGTGTGGATGTAACCAGAAGCATGTCACGGGGTTGAAATA  450

seq1  TTGTGGGAGAACAGAAGGATAGGTGAAAGGACCTGGGCTGCTGGCCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGAACAGAAGGATAGGTGAAAGGACCTGGGCTGCTGGCCATCC  500

seq1  CTGTCCCCTAGTTCCCAGTTTGTCCTTAGGGAACTCATGTCCCTTTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCTAGTTCCCAGTTTGTCCTTAGGGAACTCATGTCCCTTTGGGT  550

seq1  AAGATAGGCCTAGAGATGGTGTTCCTTTTTAGAACTTAGCTTTGTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGCCTAGAGATGGTGTTCCTTTTTAGAACTTAGCTTTGTACATA  600

seq1  CAGGATTGTGTGGTGGCCTGGGAGGTGGTGGACTCTTGGCTCCTTGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGTGTGGTGGCCTGGGAGGTGGTGGACTCTTGGCTCCTTGGTCT  650

seq1  GGGTTGCCTGGAGAATTATTTAGTGGGTGGTATGTGCAGTGTTGACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCTGGAGAATTATTTAGTGGGTGGTATGTGCAGTGTTGACTTGG  700

seq1  TGGTTTTCTTAAGAGGGGAGAAGAGACGGGAGGAGGGAGGTT  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTTAAGAGGGGAGAAGAGACGGGAGGAGGGAGGTT  742

seq1: chr9_61401546_61402688
seq2: B6Ng01-077L23.g_68_1208 (reverse)

seq1  CACCACAGCCCC-TGCCGGCGAAAGGGTGGGCCA-GCATCCGTGGACTTA  48
      |||||||||||| |||| |||||  ||| ||||| |||||||||||| ||
seq2  CACCACAGCCCCTTGCCCGCGAA--GGTTGGCCAGGCATCCGTGGAC-TA  47

seq1  GACAAAACAACCCCAAGGAGTCCAAGTT-ACACA-CTAT-AGAATTCTAA  95
      ||||||    |||||||||||||||||| ||||| |||| ||||||||  
seq2  GACAAACATCCCCCAAGGAGTCCAAGTTAACACACCTATAAGAATTCT--  95

seq1  AAAACTTGTTAGTGTGAATGGCCTGCTTTGTATGCAGCTGTTGTCAGCTG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTTAGTGTGAATGGCCTGCTTTGTATGCAGCTGTTGTCAGCTG  145

seq1  GGCACAGTTACAGCTCCCTTCTGCTGGCAGCCTAATGCGCTCAGTGTGGC  195
      ||||||||||||||| || ||||||||||| |||||||||||||||||||
seq2  GGCACAGTTACAGCT-CCATCTGCTGGCAG-CTAATGCGCTCAGTGTGGC  193

seq1  CTCTGTCTTGTCAACATGAAGCCCTTTGGCC-TTCAATGCTATTGTTTTA  244
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTGTCTTGTCAACATGAAGCCCTTTGGCCTTTCAATGCTATTGTTTTA  243

seq1  GTTAAAATGTCAGGCTCACTCTTCTGATTATTATTGATCTTTAATTTTTT  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TAAAATGTCAGGCTCACTCTTCTGATTATTATTGATCTTTAATTTTTT  292

seq1  ATTGCATTAATTAATTTATGCATGTGTCAGGGGCAGCACACACATGCCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTAATTAATTTATGCATGTGTCAGGGGCAGCACACACATGCCAC  342

seq1  GGTATACACATGGAGGTCAGAAGACAACTTTTGGAAGCCGGTTCTCTCCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACACATGGAGGTCAGAAGACAACTTTTGGAAGCCGGTTCTCTCCT  392

seq1  TCTACCATCAGGGTTTTCAGGATTGAACTTAAGACATCAGGCCTGGAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATCAGGGTTTTCAGGATTGAACTTAAGACATCAGGCCTGGAGCA  442

seq1  GGTGTCTTTATCCACTGAGCTACGTTGCCAGGCCCATTATTGGGTTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTATCCACTGAGCTACGTTGCCAGGCCCATTATTGGGTTTATA  492

seq1  ACCTCCTAGGAGAGGAGTTAAAATGTAGCTGCAGAAATAGTTTAGACAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAGGAGAGGAGTTAAAATGTAGCTGCAGAAATAGTTTAGACAGT  542

seq1  AAAGCCTTACAAAGCTTGAGGGACCCGAGTCTGGTCCTCTGTAAATGCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTACAAAGCTTGAGGGACCCGAGTCTGGTCCTCTGTAAATGCTG  592

seq1  GGGAGGACGGCAGGTGCTGATGCTTACTGGCCATCCAGGTTAGTCTACTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACGGCAGGTGCTGATGCTTACTGGCCATCCAGGTTAGTCTACTT  642

seq1  GCTGAGTCCCAGGCCAAGCAAGAGTTGTCTCGAAAACAAGATGGACAACC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCCCAGGCCAAGCAAGAGTTGTCTCGAAAACAAGATGGACAACC  692

seq1  TTTGAGGAATGGCAGCTGAAACTGTTCTCTGGCTCCGTCATCCATGTACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAATGGCAGCTGAAACTGTTCTCTGGCTCCGTCATCCATGTACA  742

seq1  CACACACATGCATACACACTTGCACATAAGCACATACACACAAAGGGGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGCATACACACTTGCACATAAGCACATACACACAAAGGGGTA  792

seq1  GGGGAGGGAAGAACAGAAGTCAAGTAGGCCGGCTCACTATTCGAGGAAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGAAGAACAGAAGTCAAGTAGGCCGGCTCACTATTCGAGGAAGG  842

seq1  GACATCATTTTGGGATAGGGAACAGAGGGGAAGGGTGGCCTCTGGTGAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTTTGGGATAGGGAACAGAGGGGAAGGGTGGCCTCTGGTGAGG  892

seq1  TCACTGAAAGACTCCATTCTGCAAACGTCCAGAGAATGTTCTGGGTGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAAGACTCCATTCTGCAAACGTCCAGAGAATGTTCTGGGTGCCT  942

seq1  GAACAGGGACTGGACTGTAGGAAGGAATTCGAGTTGGCATCTCTTGGAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGACTGGACTGTAGGAAGGAATTCGAGTTGGCATCTCTTGGAAT  992

seq1  GATCTCAGCCTCTGGAGAGTCTTCCAGATTAGCTATTTCTGAAAAGCGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCCTCTGGAGAGTCTTCCAGATTAGCTATTTCTGAAAAGCGAC  1042

seq1  AACCCCAGCTGCTCTGACTACGCAAGGCTATTGATGTTTGTCCTTCCCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGCTGCTCTGACTACGCAAGGCTATTGATGTTTGTCCTTCCCTC  1092

seq1  TGTCAGCCACTGAGTCATACTGGAGTTCATGGGAGCGGGGAGGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCACTGAGTCATACTGGAGTTCATGGGAGCGGGGAGGGAATTC  1141