BAC Information

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BAC

Clone NameB6Ng01-077M04
Chromosome9 (Build37)
Map Location 76,722,921 - 76,723,926
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M04.bB6Ng01-077M04.g
ACCDH893650DH893651
length1,2831,019
definitionDH893650|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M04, 5' end.DH893651|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccactggttcctgaattgtggaatggggactattattgctgg
gaaggctaaatagaagtccttaaagttgcttctgtccaggaaaatagtga
actaaaacccttattgcatccctggaacttcagaaattagtactacaatt
aagatagatgccaaaatggtggtttctaccacatatccgtttaactctcc
tatctggccagtgcaggagacagatgaatcatggagaatgatagttggct
atcaaaaattcattcaaatagtgactctgattgcagctctcatctagata
tggattaatacatctcctggtatgtggtgtacagctatcgatctagcaaa
tacatttttttctcagtacctctccatagggtacactacaagaaatttgc
tttcagttggcaaggccagcagtacacctttacagcttttcttccaggat
atattaactccctagcactgtgtcataacctaagtagaagggattttgat
catctgtctcttcctcaaaatatcacattggtgcattatagtgtcacatt
atgctgattggatcatgtgagcagaagttagcaaccactctgaactcatt
ggtaacacatacacacatcagaggatgggacataaacctaaccataatac
aagggccttctacctcagtgcagttcttaagtgtgggcatacagcaatat
tccttccaaggtgaagaatcttactgcacctgtccctcctaccacgaaga
aaaaagcatagcatgtagtgggtcatttcaggttttgaaggcatcacatt
ccttacttgggtatgttcctctgccccatatgcaaagtgactttgagagc
ttgtttggaggttctagcagaggagcacagctactcatataccatgaccc
aagactggtcctcctctattcaaggaaggtcatcctttttgactgagcat
gcagctctaggagggatacaatggaccagtaaggagagagatatccacct
aaccagccagatcagacaatcaccctgtcatcaatggagtgaagatgtat
aacctattgtcctcaaatcctcaagtgacattgaaagctgctgcttgtat
gagggatggaacaaaaagaccttcaagttcaggctgctgttcagctgccc
tatccggtgtctacttggacaatataccagtagaaccaagtttcttgagg
tcatggccatagggatgtggttggaagcattgtcagctctatatggggat
cacacgatatctcttggataattgtggccacat
gacatagtctgaggcaatatcacttcacctctccttccatcacagcatac
atagcaaacacacctggatatttccgaacaaagtgactacattcttttct
actccctcctccatacatacacatacacatacacatacacatacacatac
acatacacatacacatacacatacacatacacatacacatacacatacac
atacacatatacatatgtacctatgtgcctatgtgcctatatacctatac
acctatatacctatacacctatcacataaacacatatacatatataaaac
atagaatacatatattttaaattttattttatattacatataaataaaat
acatatataaatatatatgttatatatataatatggtacatatatttgtg
gtcaaaaataattttaaactttatgtcatatctacactatttctacagtt
ttttatgattattagtgaaactttcatgaatttaactgattttaagtgta
tgtgtgcatgtgtgtatgtgtatgcgtgtgtatgtgatatgtatgtgtgt
gcctgtgtgtgcctgtgtgtgtctgtgtgtctgtatgtgtgtgtgtgtgg
cctagtttaatgtcggtgctgctacagcagtttgatttttactctgtgtg
tggtctgtgagtggaagcttcagtagcaagctgttcaaagatgttcagat
cacagtgcaagaatgcagcaaccacagaaaagcaaggcagtgcgccttct
ttaaaagattataactacgactcatgggatcaaaactgaaacagaaaaaa
tgccaagtcaggatttcaagtttactgacaaaaatgctcaaggatctaaa
aggtggattgaaacaacccaatgaattaaacccaggacctgaagcctaaa
atcagcaggtgaaggaacaagaaccatctcagggaagtggattgagaaaa
attcccgagcacggtatgaaaaataagcgcagggaatccgagactttggg
aacacaaccaaaaagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76722921_76723926
seq2: B6Ng01-077M04.g_78_1096 (reverse)

seq1  GACACTTTTTGTTTGT-TTCCCAAAGTCTCTGTTTCCTTGC-TTAATTTT  48
      ||||||||||| |||| ||||||||||||| | |||| |||  | |||||
seq2  GACACTTTTTGGTTGTGTTCCCAAAGTCTCGGATTCCCTGCGCTTATTTT  50

seq1  TCATA-CGTGCT-GGGAA-TTTTCTC-ATCCACATCCCT--GATGTGTCT  92
      ||||| |||||| ||||| ||||||| |||||| |||||  ||||  |||
seq2  TCATACCGTGCTCGGGAATTTTTCTCAATCCACTTCCCTGAGATGGTTCT  100

seq1  TGT--CCTCA-CTGCTGATTTTAAGCTTCAGGTCCTGGGTTTAATTCATT  139
      |||  | ||| |||||||||||| ||||||||||||||||||||||||||
seq2  TGTTCCTTCACCTGCTGATTTTAGGCTTCAGGTCCTGGGTTTAATTCATT  150

seq1  GTG-TGTTTCAAT-CACCTTTTAGATCCTTGAGCATTTTTGTCAGTAAAC  187
      | | ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTTCAATCCACCTTTTAGATCCTTGAGCATTTTTGTCAGTAAAC  200

seq1  TTGAAATCCTGACTTGGCATTTTTTCTGTTTCAGTTTTGATCCCATGAGT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCTGACTTGGCATTTTTTCTGTTTCAGTTTTGATCCCATGAGT  250

seq1  CGTAGTTATAATCTTTTAAAGAAGGCGCACTGCCTTGCTTTTCTGTGGTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTTATAATCTTTTAAAGAAGGCGCACTGCCTTGCTTTTCTGTGGTT  300

seq1  GCTGCATTCTTGCACTGTGATCTGAACATCTTTGAACAGCTTGCTACTGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTCTTGCACTGTGATCTGAACATCTTTGAACAGCTTGCTACTGA  350

seq1  AGCTTCCACTCACAGACCACACACAGAGTAAAAATCAAACTGCTGTAGCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCACTCACAGACCACACACAGAGTAAAAATCAAACTGCTGTAGCA  400

seq1  GCACCGACATTAAACTAGGCCACACACACACACATACAGACACACAGACA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGACATTAAACTAGGCCACACACACACACATACAGACACACAGACA  450

seq1  CACACAGGCACACACAGGCACACACATACATATCACATACACACGCATAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCACACACAGGCACACACATACATATCACATACACACGCATAC  500

seq1  ACATACACACATGCACACATACACTTAAAATCAGTTAAATTCATGAAAGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACATGCACACATACACTTAAAATCAGTTAAATTCATGAAAGT  550

seq1  TTCACTAATAATCATAAAAAACTGTAGAAATAGTGTAGATATGACATAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATAATCATAAAAAACTGTAGAAATAGTGTAGATATGACATAAA  600

seq1  GTTTAAAATTATTTTTGACCACAAATATATGTACCATATTATATATATAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATTATTTTTGACCACAAATATATGTACCATATTATATATATAA  650

seq1  CATATATATTTATATATGTATTTTATTTATATGTAATATAAAATAAAATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATTTATATATGTATTTTATTTATATGTAATATAAAATAAAATT  700

seq1  TAAAATATATGTATTCTATGTTTTATATATGTATATGTGTTTATGTGATA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATATGTATTCTATGTTTTATATATGTATATGTGTTTATGTGATA  750

seq1  GGTGTATAGGTATATAGGTGTATAGGTATATAGGCACATAGGCACATAGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATAGGTATATAGGTGTATAGGTATATAGGCACATAGGCACATAGG  800

seq1  TACATATGTATATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTATATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATG  850

seq1  TGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTG  900

seq1  TATGTATGGAGGAGGGAGTAGAAAAGAATGTAGTCACTTTGTTCGGAAAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGGAGGAGGGAGTAGAAAAGAATGTAGTCACTTTGTTCGGAAAT  950

seq1  ATCCAGGTGTGTTTGCTATGTATGCTGTGATGGAAGGAGAGGTGAAGTGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTGTGTTTGCTATGTATGCTGTGATGGAAGGAGAGGTGAAGTGA  1000

seq1  TATTGCCTCAGACTATGTC  1006
      |||||||||||||||||||
seq2  TATTGCCTCAGACTATGTC  1019