BAC Information

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BAC

Clone NameB6Ng01-078M12
Chromosome9 (Build37)
Map Location 78,492,053 - 78,493,102
singlet/doubletsinglet
Overlap geneCd109
Upstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5
Downstream geneLOC384957, EG666456, LOC436085, LOC235509, LOC666479, Col12a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M12.bB6Ng01-078M12.g
ACCDH894385DH894386
length1,1591,047
definitionDH894385|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M12, 5' end.DH894386|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacatcagtcagaatggctaagatcaaaaattcaggtgatagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaataatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcctgagtgaggtaacccaatcacaaagga
actcgcacaatatgtactcactgatgagtggatattagcccagaaactta
ggatacccaagatataagatacaatttgcaaaacgcatgaaactcaagaa
gaacgaagaccaaagtgtggacactttgccccttcctagaaatgggaaca
aaacacccatggaaggagttacagagacaaagtttggagctgtgacgaaa
ggatggaccatatagtgattgccatatccagggatccatcccataatcag
cttccaatcgctgacaccattgcatacactagcaagattatgctgtaaag
gacccagatatagctgtctcttgtgggactatgccggggcctagcaaaca
cataagtggatgctcacagtcagctattggatgggtcacacggccccaat
ggaggagctagagaaattacctaagagctaaagggaactgcaccctatag
gtggaacacatatgactacagtacccggagctcttgtctctgctgcatat
gtatcaaagaatggctagtcagcatcactggaagagaggcctttgacttg
caactttatattcctcagtacaggacgctagggccaaattaattgttgat
taagcatat
gaattccctctgtagaccaggcttgcctcaaactcacagggatctgcctg
tctctgccttccaagtgctgggattataggcatgtaccacaactgcctgg
cttatttacttatttttaagatagggtctcaatatgtctgcccctgtctc
cacggtacggggatcacaggcatatgccaccacacatggcttgccctatt
tgaaagtagcgtgatgggtcgatatgtcttccacatctcaatcttggggt
gcttctcaacaggctccagtggaggggtcatacctggtataatggataag
ctcatttgtccggtctttatgatattagtcaaaatattcacagatgtgat
tcattattggcagaaattaatccatccatttgcacttcaaaataaagggg
tcctcaccttacagaggaagatcattcattcacgtgctgtgactcaagtg
agcctcgagattgctctgaatgaaatcagcctcaaaaggacagctgctgt
gtgctctcgtgtaaatgcaatatttaggatatagaaaaccagtgaaatac
aaagtggaatggcagagaccagggggtggagcgatgaggaggtggagttg
tttggacggtgtagtttctgtcctgcaaggtgaaggtccagggatttgtt
tccaaccgtgtagatgcacttagcacgactgtccagtgctcagagatggc
tagatggcaaactcatgtcactgtaattaaaacaagtgaaaaatcaatgt
caactatgagatagggtggtcatggagtgtgtatatctatattatttata
ttttatgatacacaggtgagtaatatctaatttttatgtaaacaccaaga
ggtgctttgacatgatgtgtcgggtgagatgtatgggatagctccttgct
tgaagcagtctgtgggatacgtgagggtacctacttaaaggaggatctgt
gctaggtcctactaaacgcttacatctgctgaatggccagaggtgccttt
ggccgaagttatataatcacccaatttgagccttgataatcagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78492053_78493102
seq2: B6Ng01-078M12.g_69_1115

seq1  GAATTCCCTCTGTAGACCAGGCTTGCCTCAAACTCACAGGGATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGTAGACCAGGCTTGCCTCAAACTCACAGGGATCTGCCTG  50

seq1  TCTCTGCCTTCCAAGTGCTGGGATTATAGGCATGTACCACAACTGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTCCAAGTGCTGGGATTATAGGCATGTACCACAACTGCCTGG  100

seq1  CTTATTTACTTATTTTTAAGATAGGGTCTCAATATGTCTGCCCCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTACTTATTTTTAAGATAGGGTCTCAATATGTCTGCCCCTGTCTC  150

seq1  CACGGTACGGGGATCACAGGCATATGCCACCACACATGGCTTGCCCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTACGGGGATCACAGGCATATGCCACCACACATGGCTTGCCCTATT  200

seq1  TGAAAGTAGCGTGATGGGTCGATATGTCTTCCACATCTCAATCTTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTAGCGTGATGGGTCGATATGTCTTCCACATCTCAATCTTGGGGT  250

seq1  GCTTCTCAACAGGCTCCAGTGGAGGGGTCATACCTGGTATAATGGATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAACAGGCTCCAGTGGAGGGGTCATACCTGGTATAATGGATAAG  300

seq1  CTCATTTGTCCGGTCTTTATGATATTAGTCAAAATATTCACAGATGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTCCGGTCTTTATGATATTAGTCAAAATATTCACAGATGTGAT  350

seq1  TCATTATTGGCAGAAATTAATCCATCCATTTGCACTTCAAAATAAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTGGCAGAAATTAATCCATCCATTTGCACTTCAAAATAAAGGGG  400

seq1  TCCTCACCTTACAGAGGAAGATCATTCATTCACGTGCTGTGACTCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTTACAGAGGAAGATCATTCATTCACGTGCTGTGACTCAAGTG  450

seq1  AGCCTCGAGATTGCTCTGAATGAAATCAGCCTCAAAAGGACAGCTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGAGATTGCTCTGAATGAAATCAGCCTCAAAAGGACAGCTGCTGT  500

seq1  GTGCTCTCGTGTAAATGCAATATTTAGGATATAGAAAACCAGTGAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCGTGTAAATGCAATATTTAGGATATAGAAAACCAGTGAAATAC  550

seq1  AAAGTGGAATGGCAGAGACCAGGGGGTGGAGCGATGAGGAGGTGGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAATGGCAGAGACCAGGGGGTGGAGCGATGAGGAGGTGGAGTTG  600

seq1  TTTGGACGGTGTAGTTTCTGTCCTGCAAGGTGAAGGTCCAGGGATTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACGGTGTAGTTTCTGTCCTGCAAGGTGAAGGTCCAGGGATTTGTT  650

seq1  TCCAACCGTGTAGATGCACTTAGCACGACTGTCCAGTGCTCAGAGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCGTGTAGATGCACTTAGCACGACTGTCCAGTGCTCAGAGATGGC  700

seq1  TAGATGGCAAACTCATGTCACTGTAATTAAAACAAGTGAAAAATCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCAAACTCATGTCACTGTAATTAAAACAAGTGAAAAATCAATGT  750

seq1  CAACTATGAGATAGGGTGGTCATGGAGTGTGTAATATCTATATTACTTTA  800
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CAACTATGAGATAGGGTGGTCATGGAGTGTGT-ATATCTATATTA-TTTA  798

seq1  TATTTTATGATACACAGGTGAGTAATATCTAATTTTTATGTAAACACC-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTTTATGATACACAGGTGAGTAATATCTAATTTTTATGTAAACACCAA  848

seq1  GAGGTGC-TTGACATGATGTGTCGGGTGAGATGTATGGGATAGCT-CTTG  897
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGTGCTTTGACATGATGTGTCGGGTGAGATGTATGGGATAGCTCCTTG  898

seq1  CTTGAAGCAGCCTGTGGGATACGGTGAGGGAACCGACTTAAAGGAAGGAG  947
      |||||||||| ||||||||||| ||||||| ||| ||||||||| |||| 
seq2  CTTGAAGCAGTCTGTGGGATAC-GTGAGGGTACCTACTTAAAGG-AGGA-  945

seq1  TCGGTGCTAGGGTCCTACTAGACGCTTACATCTGCTGACTGGCCAGAGGT  997
      || |||||| |||||||||| ||||||||||||||||| |||||||||||
seq2  TCTGTGCTA-GGTCCTACTAAACGCTTACATCTGCTGAATGGCCAGAGGT  994

seq1  GCCTTT-GCCGATGTTTATAT-ATCTACCAATTTGAGCCTTGATAATTCA  1045
      |||||| ||||| | |||||| |||  ||||||||||||||||||| |||
seq2  GCCTTTGGCCGAAG-TTATATAATCACCCAATTTGAGCCTTGATAA-TCA  1042

seq1  GCTGC  1050
      |||||
seq2  GCTGC  1047