BAC Information

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BAC

Clone NameB6Ng01-079B24
Chromosome17 (Build37)9 (Build37)
Map Location 6,322,306 - 6,322,829121,712,761 - 121,714,237
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181
Downstream geneLOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B24.bB6Ng01-079B24.g
ACCDH894627DH894628
length5371,084
definitionDH894627|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B24, 5' end.DH894628|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,322,306 - 6,322,829)(121,712,761 - 121,714,237)
sequence
tctcttctgcctcccaaaaatcactgacatgggtgtactcttttgaatag
gaatggccctcacaggctcatgtattttaatacttgtctatagggagtag
cattattaggaggtagccctgttagagtgtgtgtgaccttgttggagaaa
gtatgtcactgtggggggtgggctttgaggtctgctatgctcaagctagg
ctccccggtacacgcctgtaactcccagtaaagacagacgaatcctagga
gctcagtggccagcagatgtagttagtgagctccaagttcagggagagat
cctgactcaaaaaaataagttacagggactggagaggcagtcatcagtta
acagcatttctgcttttccagagaaccccaaatcagttctaagcacccac
accaggtggctcacaaccatctgtaactccagttccaggagattcgatgc
cttttttggtctccacaggcatggctatggaacaagtacatatatataag
tatatatatatatatatatacacacacacacatatat
gaattccaggaaaagaaaggaatgtctgccatttaacagaaacaggattc
aagacaacctcattaaaaagtaggcaaaacgtattatgcctcaaagaaga
tataagagttactgtctgcacatgaaagaaacgttcggtatctgctagca
ctggggaagccgaagccacgttgagataacacttcagactcactaggatg
accacatatggaaatgaaacgaaacaaaacaacctcgtggcccctggaga
cccagcatcctcagcatcagagctgtctggaaggctgtgagggatggtgg
taagatcctctctgcaggggataaacacgcaggtaagtcaccgctggtcg
caatcctccaagttcctagaggctaggtgtagctagctgctggtggggct
cctgcctaacaagtccagggccctgggttcatccccagcacacagaaaaa
ataaagcaaaatgcaccgctaatcccagcacctgggaggcagggagggga
ggctcaggactctgaggacagcatggtctacccagtaagcaagcgcaagg
cttgccagggctgcagagtaaggccctgcctcaaaaacaaacaaataaac
aaacaccaacaaaacaaaaactaagtaagctgaggacataaataaacaca
agaaagtatctcagaaaccagtaactcagactgaggaatgtaaagtaaac
tagggaagccgtgagatcaactcacagccgtggagagaacccatctcgat
gaggagcgaagattcatggggtatcagaaagtggaatgggcagagattat
gcataatgtatggtgcaactttaatatttatgacaaattaaaaatgtaaa
agcaacaaatccaagctgctgtcactctgttcggtgagtgaaacaggaat
gtgcgccgactctcacagggaaggagggccttgcatttctgctttgcttt
gctctttcagaatgtgtgtgtcctgcttaactgtggtccatttacactcg
tggactagaaatcaaagctggcatcacagaaaaatgggaaggcatgatgt
gagttccatagtgtatgtaggtgtgtattatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_6322306_6322829
seq2: B6Ng01-079B24.b_455_587 (reverse)

seq1  ATATATGTGTGTGTGTGTGTATATATATATATATATATATATATATATAT  50
        |||| ||||||||||||||||||||||||||||||||  |||||||||
seq2  --ATATATGTGTGTGTGTGTATATATATATATATATATACTTATATATAT  48

seq1  GTCATAATATTATTTTTAAGTATAATGAATGGGTTGTGTCCAAGAAAGGT  100
      ||  |       | ||  |     |||  |  || | | |||| ||||| 
seq2  GTACT-------TGTTCCATAGCCATGCCT--GTGGAGACCAAAAAAGG-  88

seq1  GCCACTTCCTACTCTCCTTCCCCAAAAATACTGCCTGTGGAAAGAAGTCT  150
        ||    | | ||||||           ||||    |  | ||| |  |
seq2  --CA---TCGAATCTCCT--------GGAACTGGAGTT--ACAGATGGTT  123

seq1  CTCATCCCACAAGCCTAGTAGTGTGCACAATAAAAACTCACATGTGAGAT  200
       | | ||  |                                        
seq2  GTGAGCCACC----------------------------------------  133

seq1  TGCATCCCAAGAGAGTGGTGTGATCTCTTGTAAATCAAATATTAAGTGCA  250
                                                        
seq2  --------------------------------------------------  133

seq1  GAAACACTTATTCCGGAGAGTATTGCATTTTCACTGGGATCCGGGACAGG  300
                                                        
seq2  --------------------------------------------------  133

seq1  TTCCCATGAAAGATCAATCTTGGGTAACCTGTTAAAAATAGCCACTCATG  350
                                                        
seq2  --------------------------------------------------  133

seq1  TGTGTGTGTGTCCACAATTGAGTTTAAGTTTTAGAATATGAGTCTGTCTT  400
                                                        
seq2  --------------------------------------------------  133

seq1  GGTTTTGTTTCTTTTTTTTTTCTTTTTTAGATTTATTTATTTATTACATG  450
                                                        
seq2  --------------------------------------------------  133

seq1  TAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCT  500
                                                        
seq2  --------------------------------------------------  133

seq1  TATTAAGGGTGGTTGTGAGCCACC  524
                              
seq2  ------------------------  133

seq1: chr9_121712761_121714237
seq2: B6Ng01-079B24.g_68_1151

seq1  GAATTCCAGGAAAAGAAAGGAATGTCTGCCATTTAACAGAAACAGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAAGAAAGGAATGTCTGCCATTTAACAGAAACAGGATTC  50

seq1  AAGACAACCTCATTAAAAAGTAGGCAAAACGTATTATGCCTCAAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACCTCATTAAAAAGTAGGCAAAACGTATTATGCCTCAAAGAAGA  100

seq1  TATAAGAGTTACTGTCTGCACATGAAAGAAACGTTCGGTATCTGCTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTTACTGTCTGCACATGAAAGAAACGTTCGGTATCTGCTAGCA  150

seq1  CTGGGGAAGCCGAAGCCACGTTGAGATAACACTTCAGACTCACTAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGCCGAAGCCACGTTGAGATAACACTTCAGACTCACTAGGATG  200

seq1  ACCACATATGGAAATGAAACGAAACAAAACAACCTCGTGGCCCCTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATATGGAAATGAAACGAAACAAAACAACCTCGTGGCCCCTGGAGA  250

seq1  CCCAGCATCCTCAGCATCAGAGCTGTCTGGAAGGCTGTGAGGGATGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCCTCAGCATCAGAGCTGTCTGGAAGGCTGTGAGGGATGGTGG  300

seq1  TAAGATCCTCTCTGCAGGGGATAAACACGCAGGTAAGTCACCGCTGGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCTCTCTGCAGGGGATAAACACGCAGGTAAGTCACCGCTGGTCG  350

seq1  CAATCCTCCAAGTTCCTAGAGGCTAGGTGTAGCTAGCTGCTGGTGGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCCAAGTTCCTAGAGGCTAGGTGTAGCTAGCTGCTGGTGGGGCT  400

seq1  CCTGCCTAACAAGTCCAGGGCCCTGGGTTCATCCCCAGCACACAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAACAAGTCCAGGGCCCTGGGTTCATCCCCAGCACACAGAAAAA  450

seq1  ATAAAGCAAAATGCACCGCTAATCCCAGCACCTGGGAGGCAGGGAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAAATGCACCGCTAATCCCAGCACCTGGGAGGCAGGGAGGGGA  500

seq1  GGCTCAGGACTCTGAGGACAGCATGGTCTACCCAGTAAGCAAGCGCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGACTCTGAGGACAGCATGGTCTACCCAGTAAGCAAGCGCAAGG  550

seq1  CTTGCCAGGGCTGCAGAGTAAGGCCCTGCCTCAAAAACAAACAAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGGGCTGCAGAGTAAGGCCCTGCCTCAAAAACAAACAAATAAAC  600

seq1  AAACACCAACAAAACAAAAACTAAGTAAGCTGAGGACATAAATAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAACAAAACAAAAACTAAGTAAGCTGAGGACATAAATAAACACA  650

seq1  AGAAAGTATCTCAGAAACCAGTAACTCAGACTGAGGAATGTAAAGTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATCTCAGAAACCAGTAACTCAGACTGAGGAATGTAAAGTAAAC  700

seq1  TAGGGAAGCCGTGAGATCAACTCACAGCCGTGGAGAGAACCCATCTCGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGCCGTGAGATCAACTCACAGCCGTGGAGAGAACCCATCTCGAT  750

seq1  GAGGAGCGAAGATTCATGGGGTATCAGAAAGTGGAATGGGCAGAGATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCGAAGATTCATGGGGTATCAGAAAGTGGAATGGGCAGAGATTAT  800

seq1  GCATAATGTATGGTGCAACTTAAATATTTATGACAAATTAAAAATGTAAA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCATAATGTATGGTGCAACTTTAATATTTATGACAAATTAAAAATGTAAA  850

seq1  AGCAAACAAATCCAAGGCTGCTGTCACTCTG-TCGGTGAGTGAAACAGGA  899
      ||| ||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  AGC-AACAAATCCAA-GCTGCTGTCACTCTGTTCGGTGAGTGAAACAGGA  898

seq1  ATGTGCGCCGACTCTCACAGGGAAGGAGGGCCTTGCATTTCTGCTTTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGCCGACTCTCACAGGGAAGGAGGGCCTTGCATTTCTGCTTTGCT  948

seq1  TTGCTCTTTCAGGAATGTGTGTGTCCTGCTTAACTGTGGGTTCCATTTAC  999
      ||||||||||| |||||||||||||||||||||||||||  |||||||||
seq2  TTGCTCTTTCA-GAATGTGTGTGTCCTGCTTAACTGTGG--TCCATTTAC  995

seq1  ACTCGTGGACTTAAGAAACCAAAAGCTGGCATCACAG-AAAATGGGAAAG  1048
      |||||||||||  ||||| | |||||||||||||||| |||||||||| |
seq2  ACTCGTGGACT--AGAAATC-AAAGCTGGCATCACAGAAAAATGGGAAGG  1042

seq1  CATGATGTGAGTTTCCATAGTGTATGTAAGTGTGTA-TATGTGTTTGTGT  1097
      ||||||||||| |||||||||||||||| ||||||| ||||||       
seq2  CATGATGTGAG-TTCCATAGTGTATGTAGGTGTGTATTATGTG-------  1084

seq1  GTGTGTGTGCATGTTGTGAGAGTGTGTATGTGCATGTCATGTGTGTGTGA  1147
                                                        
seq2  --------------------------------------------------  1084

seq1  ATATGTGTGTGAGTGTATGTGTGTGAGTGTGTGTGCATGTGCATATAGTG  1197
                                                        
seq2  --------------------------------------------------  1084

seq1  AGAGAGTGTGCATGTGAGGGTATTTGTTTGTTTTTTGTTTTTTGTTTTTC  1247
                                                        
seq2  --------------------------------------------------  1084

seq1  GAGACAGGGTTTCTCTGTATAACCCTGGCTGTCCTGGAACTCACTTTGTA  1297
                                                        
seq2  --------------------------------------------------  1084

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGT  1347
                                                        
seq2  --------------------------------------------------  1084

seq1  GCTGGGATTAAAGGCGTGCACCACCATGCTGCGTATGAATGTGTATGTGA  1397
                                                        
seq2  --------------------------------------------------  1084

seq1  GTATGTGTGTATGTTGTGAATGTGTGTGTATGTGTGTGTGCATTTGTGAA  1447
                                                        
seq2  --------------------------------------------------  1084

seq1  TGTGTATGTGTATGTAGGTGTGTGTATGTG  1477
                                    
seq2  ------------------------------  1084