BAC Information

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BAC

Clone NameB6Ng01-079C18
Chromosome9 (Build37)
Map Location 42,350,126 - 42,495,254
singlet/doubletdoublet
Overlap geneGrik4
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C18.bB6Ng01-079C18.g
ACCDH894661DH894662
length1,1681,138
definitionDH894661|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C18, 5' end.DH894662|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,494,074 - 42,495,254)(42,350,126 - 42,351,263)
sequence
gaattccctgtggattgtagggttttacagacacagtagggccctcaact
ttcatagcacacagggtgggttccttgtgatgggtgcctcttttacatct
aacaatactatgagaattacatgctgcttcctctattttaggaagaacag
tgatgctcaaagttgtgggataatcagcctgagcccagagctagtctgcg
caatctgctgcatctcccttcggtcctctgcctggtgctggtattgcctt
gtgacttaacctcagctactgagcctctgccttgcagctaagccagaagt
gaacaacagctctgttacagaagggaagcagagagctatcagtcacctct
ctgcttctctgtccaagtgccagagacagcagcttaaagggagaaaaggc
ttgcttggctgcacagtctttgaggtccgtgactgagcaccatggagagg
cttttgttagagtaaagttgcccactgcgtggtacccaggaagcaagagg
agatgggaagagggggaacaaggaggctcccaatatccctgtaaggacac
gccccagtgacctcactcccttccacttagccccacctcccactgccatg
tgatgaccacacgccttcaccacatgagcctttgaaggatattttcaccc
caaatgtaacaagggatgttcaacccagacaggagacctgatgacatcat
ttctccaagactctgggggagtctccttctcttcattttgcaacctcaaa
ctaagtgaatgaaagaaaagagcaacttgtgtagctattggtgtttagac
actgggacttccccgtgaggatgcaacaatgttctgttgctctagcctgg
gctgtttgggctgcaagaaagggagcaggttctcactggtttaaatacag
cagatgatgcggaggcaggcagtggtgcccaggcccaccagcatctctct
ctctctctctcctctcctgcccaccccgtgtttctttctctgcctctccc
gtgttctcattgcttctctataaccttctgttctgcgagtcaggcttttc
cctcagcagttagtcctccactctacccatctaactatctcataatggcc
tgcccggatggtctcatcctggagccttttatgagtgctctcctctatga
tcagcatttaagcattgg
gaattctgggagaacatcagaaggaagcaaggttgagaaataagaaagga
aacattggcttaaaatggagggcatcaaagaatcacgggataggcccttc
tgctgtgtgccccacatcacagcctggcatctctttctttctatcatctc
accccaagagggtcactgctattgcataatggaggagaggcctgtgcctt
taataggagatgaagaagggacttgtcctgtgagttctgcctaccggtca
accactggttctgtctcagccaccctccagaattccttcagcaccaacct
cttcagacaagtagaattcaaactctggttttaatccctcattgttcctc
agtgtgggacagattcattcaggactaactcagtgtgggacagattcatt
caggactaataaagagacagtcctgaagaagcagtgtggatgtctcttac
ctaacctaagccaatgtatcaactctaccacccaaggctgtcttctgttt
taccaataataacaagacagaattctgggggtccatccaaactctgtttg
tacaaagccttccctgtccctatgccaacaggcatggagattcttatgga
aaacagcaggccttgggcctgtctcctgtgaaaacgagcgtcttggatgt
tagttggtgagacactgtgagcccccaggaggaaaccttccctggagctc
tcgaagcacatgaaaactgctattctgtgcggcctgcttctgtcagcctc
tggcgatccatcagtgtggctgtcattgaacactagactgtggcaggggc
ttctcttgagacttacaaggcgaaatccccaaagaacccaaatgtgtctg
ctccagagaacccatcagtctaggagaagtgactgggcccatccccactg
agcatctccttaacgctgctcacaggcacactgttttcactactgtgggc
gtacgcaggtgtgtggtttatgttaatacataggaatgcatgtacagtga
attaggggtgtctactatttttccatctttttaattccaagcgagttctc
ctcactgagactgaggtcaacggactcatttgcatacctgtctggcgagt
gagctctggcaactcctgtctgtgtgtttctttccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42494074_42495254
seq2: B6Ng01-079C18.b_44_1211 (reverse)

seq1  CCAATGCCTAACATGCTGAATCATAGAGGA-AGCACTCAATAAAAGCTCC  49
      ||||||| ||| |||||| ||||||||||| ||||||||  ||| |||||
seq2  CCAATGCTTAA-ATGCTG-ATCATAGAGGAGAGCACTCATAAAAGGCTCC  48

seq1  AGGATGAAGACTCATCCCGGGCA-GCCATTATGAGATAGTGTAGGATGGG  98
      |||||| |||| ||| ||||||| |||||||||||||||| || ||||||
seq2  AGGATG-AGAC-CAT-CCGGGCAGGCCATTATGAGATAGT-TA-GATGGG  93

seq1  TAGGAGTGGAGAACTAACCTGCTGAGGGAAAAGCCTGGACTCGGCAGGAC  148
      || |||||||| ||||| |||||||||||||||||| ||||| |||| ||
seq2  TA-GAGTGGAGGACTAA-CTGCTGAGGGAAAAGCCT-GACTC-GCAGAAC  139

seq1  AGGAAGGTTATAGAGAAGCAATGAGAACACGGGAGAGGCAGAGAAAGAAA  198
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAAGGTTATAGAGAAGCAATGAGAACACGGGAGAGGCAGAGAAAGAAA  188

seq1  CACGGGGTGGGGCAGGGAGAGGGAGAGAGAGAGAGAGAGATGCTGGTGGG  248
      |||||||| ||||| ||||| |||||||||||||||||||||||||||||
seq2  CACGGGGT-GGGCA-GGAGA-GGAGAGAGAGAGAGAGAGATGCTGGTGGG  235

seq1  CCTGGGCACCACTGCCTGCCTCCGCATCATCTGCTGTATTTAAACCAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCACCACTGCCTGCCTCCGCATCATCTGCTGTATTTAAACCAGTG  285

seq1  AGAACCTGCTCCCTTTCTTGCAGCCCAAACAGCCCAGGCTAGAGCAACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGCTCCCTTTCTTGCAGCCCAAACAGCCCAGGCTAGAGCAACAG  335

seq1  AACATTGTTGCATCCTCACGGGGAAGTCCCAGTGTCTAAACACCAATAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTTGCATCCTCACGGGGAAGTCCCAGTGTCTAAACACCAATAGC  385

seq1  TACACAAGTTGCTCTTTTCTTTCATTCACTTAGTTTGAGGTTGCAAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGTTGCTCTTTTCTTTCATTCACTTAGTTTGAGGTTGCAAAATG  435

seq1  AAGAGAAGGAGACTCCCCCAGAGTCTTGGAGAAATGATGTCATCAGGTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGAGACTCCCCCAGAGTCTTGGAGAAATGATGTCATCAGGTCT  485

seq1  CCTGTCTGGGTTGAACATCCCTTGTTACATTTGGGGTGAAAATATCCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGGGTTGAACATCCCTTGTTACATTTGGGGTGAAAATATCCTTC  535

seq1  AAAGGCTCATGTGGTGAAGGCGTGTGGTCATCACATGGCAGTGGGAGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCATGTGGTGAAGGCGTGTGGTCATCACATGGCAGTGGGAGGTG  585

seq1  GGGCTAAGTGGAAGGGAGTGAGGTCACTGGGGCGTGTCCTTACAGGGATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAGTGGAAGGGAGTGAGGTCACTGGGGCGTGTCCTTACAGGGATA  635

seq1  TTGGGAGCCTCCTTGTTCCCCCTCTTCCCATCTCCTCTTGCTTCCTGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCTCCTTGTTCCCCCTCTTCCCATCTCCTCTTGCTTCCTGGGT  685

seq1  ACCACGCAGTGGGCAACTTTACTCTAACAAAAGCCTCTCCATGGTGCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCAGTGGGCAACTTTACTCTAACAAAAGCCTCTCCATGGTGCTCA  735

seq1  GTCACGGACCTCAAAGACTGTGCAGCCAAGCAAGCCTTTTCTCCCTTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGACCTCAAAGACTGTGCAGCCAAGCAAGCCTTTTCTCCCTTTAA  785

seq1  GCTGCTGTCTCTGGCACTTGGACAGAGAAGCAGAGAGGTGACTGATAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTCTCTGGCACTTGGACAGAGAAGCAGAGAGGTGACTGATAGCT  835

seq1  CTCTGCTTCCCTTCTGTAACAGAGCTGTTGTTCACTTCTGGCTTAGCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCCCTTCTGTAACAGAGCTGTTGTTCACTTCTGGCTTAGCTGC  885

seq1  AAGGCAGAGGCTCAGTAGCTGAGGTTAAGTCACAAGGCAATACCAGCACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGCTCAGTAGCTGAGGTTAAGTCACAAGGCAATACCAGCACC  935

seq1  AGGCAGAGGACCGAAGGGAGATGCAGCAGATTGCGCAGACTAGCTCTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGACCGAAGGGAGATGCAGCAGATTGCGCAGACTAGCTCTGGG  985

seq1  CTCAGGCTGATTATCCCACAACTTTGAGCATCACTGTTCTTCCTAAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGATTATCCCACAACTTTGAGCATCACTGTTCTTCCTAAAATA  1035

seq1  GAGGAAGCAGCATGTAATTCTCATAGTATTGTTAGATGTAAAAGAGGCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGCATGTAATTCTCATAGTATTGTTAGATGTAAAAGAGGCAC  1085

seq1  CCATCACAAGGAACCCACCCTGTGTGCTATGAAAGTTGAGGGCCCTACTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAAGGAACCCACCCTGTGTGCTATGAAAGTTGAGGGCCCTACTG  1135

seq1  TGTCTGTAAAACCCTACAATCCACAGGGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  TGTCTGTAAAACCCTACAATCCACAGGGAATTC  1168

seq1: chr9_42350126_42351263
seq2: B6Ng01-079C18.g_68_1205

seq1  GAATTCTGGGAGAACATCAGAAGGAAGCAAGGTTGAGAAATAAGAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAACATCAGAAGGAAGCAAGGTTGAGAAATAAGAAAGGA  50

seq1  AACATTGGCTTAAAATGGAGGGCATCAAAGAATCACGGGATAGGCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGCTTAAAATGGAGGGCATCAAAGAATCACGGGATAGGCCCTTC  100

seq1  TGCTGTGTGCCCCACATCACAGCCTGGCATCTCTTTCTTTCTATCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGCCCCACATCACAGCCTGGCATCTCTTTCTTTCTATCATCTC  150

seq1  ACCCCAAGAGGGTCACTGCTATTGCATAATGGAGGAGAGGCCTGTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGAGGGTCACTGCTATTGCATAATGGAGGAGAGGCCTGTGCCTT  200

seq1  TAATAGGAGATGAAGAAGGGACTTGTCCTGTGAGTTCTGCCTACCGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAGATGAAGAAGGGACTTGTCCTGTGAGTTCTGCCTACCGGTCA  250

seq1  ACCACTGGTTCTGTCTCAGCCACCCTCCAGAATTCCTTCAGCACCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGTTCTGTCTCAGCCACCCTCCAGAATTCCTTCAGCACCAACCT  300

seq1  CTTCAGACAAGTAGAATTCAAACTCTGGTTTTAATCCCTCATTGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACAAGTAGAATTCAAACTCTGGTTTTAATCCCTCATTGTTCCTC  350

seq1  AGTGTGGGACAGATTCATTCAGGACTAACTCAGTGTGGGACAGATTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGACAGATTCATTCAGGACTAACTCAGTGTGGGACAGATTCATT  400

seq1  CAGGACTAATAAAGAGACAGTCCTGAAGAAGCAGTGTGGATGTCTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTAATAAAGAGACAGTCCTGAAGAAGCAGTGTGGATGTCTCTTAC  450

seq1  CTAACCTAAGCCAATGTATCAACTCTACCACCCAAGGCTGTCTTCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTAAGCCAATGTATCAACTCTACCACCCAAGGCTGTCTTCTGTTT  500

seq1  TACCAATAATAACAAGACAGAATTCTGGGGGTCCATCCAAACTCTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATAATAACAAGACAGAATTCTGGGGGTCCATCCAAACTCTGTTTG  550

seq1  TACAAAGCCTTCCCTGTCCCTATGCCAACAGGCATGGAGATTCTTATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCCTTCCCTGTCCCTATGCCAACAGGCATGGAGATTCTTATGGA  600

seq1  AAACAGCAGGCCTTGGGCCTGTCTCCTGTGAAAACGAGCGTCTTGGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGGCCTTGGGCCTGTCTCCTGTGAAAACGAGCGTCTTGGATGT  650

seq1  TAGTTGGTGAGACACTGTGAGCCCCCAGGAGGAAACCTTCCCTGGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTGAGACACTGTGAGCCCCCAGGAGGAAACCTTCCCTGGAGCTC  700

seq1  TCGAAGCACATGAAAACTGCTATTCTGTGCGGCCTGCTTCTGTCAGCC-C  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCGAAGCACATGAAAACTGCTATTCTGTGCGGCCTGCTTCTGTCAGCCTC  750

seq1  TGGCGATCCATCAGTGTGGCTGTCATTGAACACTAGACTGTGGCAGGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATCCATCAGTGTGGCTGTCATTGAACACTAGACTGTGGCAGGGGC  800

seq1  TTCTCCTGAGACTTACAAGGCGATATCCCCAAAGAACCCAAATGTGTCTG  849
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTCTTGAGACTTACAAGGCGAAATCCCCAAAGAACCCAAATGTGTCTG  850

seq1  CTCCAGAGAACCCATCAGTCTAGGAGAAGTGACTGGG-CCATCCCCACTG  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCCAGAGAACCCATCAGTCTAGGAGAAGTGACTGGGCCCATCCCCACTG  900

seq1  AGCATCTCCTAAACGCTGCTCACAGGCACACTGTTTTCACTACTGTGGGC  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCCTTAACGCTGCTCACAGGCACACTGTTTTCACTACTGTGGGC  950

seq1  GTACGCAGGTGTGTGGGTTTATGTTTATACATAGGAATGCATGTACAGGT  998
      |||||||||||||| |||||||||| ||||||||||||||||||||| ||
seq2  GTACGCAGGTGTGT-GGTTTATGTTAATACATAGGAATGCATGTACA-GT  998

seq1  GGATTAGGGGTGTCTTACTA-TTCTCCACCTTGTTATTTCCAGGCAGGGG  1047
      | |||||||||||| ||||| || |||| ||| ||| ||||| || | | 
seq2  GAATTAGGGGTGTC-TACTATTTTTCCATCTTTTTAATTCCAAGC-GAGT  1046

seq1  TCTCCTCACTGAGACTGGGGCCAACTGACTCATTTGCTATCCTG-CTGGC  1096
      ||||||||||||||||| || |||| |||||||||||   |||| |||||
seq2  TCTCCTCACTGAGACTGAGGTCAACGGACTCATTTGCATACCTGTCTGGC  1096

seq1  GAGTGAGCTCTGGCAACCGCT-TGTCTGTGTTTCTTCTCCACC  1138
      |||||||||||||||||  || | | |||||||||| ||||||
seq2  GAGTGAGCTCTGGCAACTCCTGTCTGTGTGTTTCTT-TCCACC  1138