BAC Information

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BAC

Clone NameB6Ng01-079H19
Chromosome9 (Build37)
Map Location 94,776,111 - 94,928,649
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H19.bB6Ng01-079H19.g
ACCDH894883DH894884
length9221,152
definitionDH894883|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H19, 5' end.DH894884|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,927,726 - 94,928,649)(94,776,111 - 94,777,281)
sequence
gaattcaacaaagtagaaagatgcaaaatgaatgcacaaacattggatgc
attttaataagccaacaataaaaatctaaaagggaaattataaaaagtaa
ttctatctacaatagcagaaaaagaaaaaatacttaggtgtaaaccaagg
tgacaagattaagattataaaatggtgaaacaaatgaaaattagaaataa
atggaaacatttccatggtcataaaatgttctagtatttaatattgttac
aatatcaatactacccaatttgatgtttatcaaaacctgaaattactatt
ttgtttgcaaaaataggaaattcatatggagtctcaatggtcctcctcaa
ccttccatagctaaaattttcttgagaaaaagaaagagaacaaaataaga
ctcaagcttccatgtttgtaaaacttacaaaacaaagcaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacctttccataatg
gcttgaactgcttcactaatggttggggagcataaggttagagtttcatt
ctcatagccgagttaaaaaaacatcagggagcctagcctgggtggggcac
gcctttaatcctagtacttgggagacaaaagcgagcggatttcagagttc
aatgccaggctggtctacacagagagtacaatgacagcaagggctatact
gagaaaccccatcttgaataccccacaccaaaccaaaaaaacctcacctc
aaaaaaaaaaaaaaaaccaaaccagacatctggggagggtagtgtcacgt
caaaacccaaccctgccgtataaagtaacaagaggatagtgtagctcatt
tcgtttgtgagttcagtgctagtgagagatgagattaaataaaaaaagca
tttgagttgttgcttgagtaat
gaattcaaaacaaatacatgaacttcatatcccaggccaacggcttattt
ttcaaataacagttaaacagtcaaatgtgaccaaaggctgtagtgggaat
tttggcttctctgaaaaacacagaaatataagagtaggttttcattttaa
tcccaggtgtgggatttgaggctctttcagcctgtccccagcagctgact
atgatttgccttgtgctctggcagaggcgtggttttgccagctgtagata
gtttctgtgattatgtgatgtttggaattctgggaacttttcagagggcg
tataaatgctagggctccaagagtcacagttgatggttggttgatgttga
ttgctgttggtcacactttgttaagtagctatgtgaaaagaagaaacaag
aagaagaaattagatatcctgacagagatcaactttccccatggaactca
ttccccgtaaccagcagaaagtatctaatgatagcgctgccctctttccc
ctctatcatttttttctctcctacctggtattagggggttgaaagtgtag
aagacatgggtggaaaagagtagaataaagaacccacaaagtaggcaaaa
gtctggttacaaatgcgttggatgtgtcatattttgagggtgtttaattt
aaaggtgccagcatgggcagctttattgttttcatcctttctgatttcta
tccttatctgtttgttttgggggcatttgaatactaattctgatgtgaaa
ggcaaatattgagatagtcacacatggcctgttcttgtagctgctcatct
tcagtctttccttgttgggttcataagaaaaaaaattaccagagaaactg
tctgctattctattacaattccaataaattcttgatgggaaatttgatct
tggaacgtccctcagctgtagattggggggaaatttgactccccatagac
tccgtgcactttttcaagtcagttttctcctttcatcaaactgtgagttt
aatcatccagagaaagaagatctatttagagcagactgaactgaagctgt
gatttatttcgcgatcagataaactttaatggacccacctgaaatcgatc
cagccatagatctgctcgctaggattgaaggccgataattattatgggaa
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94927726_94928649
seq2: B6Ng01-079H19.b_44_965 (reverse)

seq1  ATTCCTCAAGCAAC-ACCCAAATGCTTTTTTTTTTTAACCACATCTCTCA  49
      ||| |||||||||| || |||||||||||||| ||||| | |||||||||
seq2  ATTACTCAAGCAACAACTCAAATGCTTTTTTTATTTAATCTCATCTCTCA  50

seq1  CTAGCCTGGAACTCACCCACTAAATGAGCCCCAGTATCCACCTGTCTCTT  99
      |||||   ||||||||  || ||||||||  || ||||| | |||  |||
seq2  CTAGCACTGAACTCACAAACGAAATGAGCTACACTATCCTCTTGTTACTT  100

seq1  TAT-CCTCAGGGTTGGGTTTGCAAGTGACACTACCATCCCCAGATGTCTT  148
      ||| |  |||||||||||||  | ||||||||||| ||||||||||||| 
seq2  TATACGGCAGGGTTGGGTTTTGACGTGACACTACCCTCCCCAGATGTCTG  150

seq1  TTTTGGTTTTTTTTTTTTTTTT-TTTTGAGGTTTTTTTTTTTTGGTTTGG  197
       |||||||||||||||||||||    ||||||||||||  |||||| |||
seq2  GTTTGGTTTTTTTTTTTTTTTTGAGGTGAGGTTTTTTTGGTTTGGTGTGG  200

seq1  GGTTTTCAAGACGGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCT  247
      ||| ||||||| |||||||||| |||||||||| |||||| | | |||||
seq2  GGTATTCAAGATGGGGTTTCTCAGTATAGCCCTTGCTGTCATTGTACTCT  250

seq1  CTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGTCT  297
      || |||||||||| ||||| |||||||| |||||||||  || | |||||
seq2  CTGTGTAGACCAGCCTGGCATTGAACTCTGAAATCCGCTCGCTTTTGTCT  300

seq1  CCCAAGTACTAGGATTAAAGGCGTGCGCCACCACTGCCAGGCTCCCAGAT  347
      |||||||||||||||||||||||||| |||||   || |||||||| |||
seq2  CCCAAGTACTAGGATTAAAGGCGTGCCCCACCCAGGCTAGGCTCCCTGAT  350

seq1  GTCTTTTTAACATGGCTCTGAGAATGAAACTCTAACCTCATGCTCCCCAA  397
      || ||||||||  |||| |||||||||||||||||||| |||||||||||
seq2  GTTTTTTTAACTCGGCTATGAGAATGAAACTCTAACCTTATGCTCCCCAA  400

seq1  CCATTACTGAAGTTGTTCAAGCCATTATTGAAAGGTTTTGTTTTGTTTTG  447
      |||||| |||||  |||||||||||||| |||||     |||||||||||
seq2  CCATTAGTGAAGCAGTTCAAGCCATTATGGAAAG-----GTTTTGTTTTG  445

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGTTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGTTTTG  495

seq1  TAAGTTTTACAAACATGGAAGCTTGAGTCTTATTTTGTTCTCTTTCTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTACAAACATGGAAGCTTGAGTCTTATTTTGTTCTCTTTCTTTT  545

seq1  TCTCAAGAAAATTTTAGCTATGGAAGGTTGAGGAGGACCATTGAGACTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAAAATTTTAGCTATGGAAGGTTGAGGAGGACCATTGAGACTCC  595

seq1  ATATGAATTTCCTATTTTTGCAAACAAAATAGTAATTTCAGGTTTTGATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTTCCTATTTTTGCAAACAAAATAGTAATTTCAGGTTTTGATA  645

seq1  AACATCAAATTGGGTAGTATTGATATTGTAACAATATTAAATACTAGAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAATTGGGTAGTATTGATATTGTAACAATATTAAATACTAGAAC  695

seq1  ATTTTATGACCATGGAAATGTTTCCATTTATTTCTAATTTTCATTTGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGACCATGGAAATGTTTCCATTTATTTCTAATTTTCATTTGTTT  745

seq1  CACCATTTTATAATCTTAATCTTGTCACCTTGGTTTACACCTAAGTATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTATAATCTTAATCTTGTCACCTTGGTTTACACCTAAGTATTT  795

seq1  TTTCTTTTTCTGCTATTGTAGATAGAATTACTTTTTATAATTTCCCTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTGCTATTGTAGATAGAATTACTTTTTATAATTTCCCTTTT  845

seq1  AGATTTTTATTGTTGGCTTATTAAAATGCATCCAATGTTTGTGCATTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTATTGTTGGCTTATTAAAATGCATCCAATGTTTGTGCATTCAT  895

seq1  TTTGCATCTTTCTACTTTGTTGAATTC  924
      |||||||||||||||||||||||||||
seq2  TTTGCATCTTTCTACTTTGTTGAATTC  922

seq1: chr9_94776111_94777281
seq2: B6Ng01-079H19.g_68_1219

seq1  GAATTCAAAACAAATACATGAACTTCATATCCCAGGCCAACGGCTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAATACATGAACTTCATATCCCAGGCCAACGGCTTATTT  50

seq1  TTCAAATAACAGTTAAACAGTCAAATGTGACCAAAGGCTGTAGTGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAACAGTTAAACAGTCAAATGTGACCAAAGGCTGTAGTGGGAAT  100

seq1  TTTGGCTTCTCTGAAAAACACAGAAATATAAGAGTAGGTTTTCATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCTCTGAAAAACACAGAAATATAAGAGTAGGTTTTCATTTTAA  150

seq1  TCCCAGGTGTGGGATTTGAGGCTCTTTCAGCCTGTCCCCAGCAGCTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGTGGGATTTGAGGCTCTTTCAGCCTGTCCCCAGCAGCTGACT  200

seq1  ATGATTTGCCTTGTGCTCTGGCAGAGGCGTGGTTTTGCCAGCTGTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGCCTTGTGCTCTGGCAGAGGCGTGGTTTTGCCAGCTGTAGATA  250

seq1  GTTTCTGTGATTATGTGATGTTTGGAATTCTGGGAACTTTTCAGAGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTGATTATGTGATGTTTGGAATTCTGGGAACTTTTCAGAGGGCG  300

seq1  TATAAATGCTAGGGCTCCAAGAGTCACAGTTGATGGTTGGTTGATGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGCTAGGGCTCCAAGAGTCACAGTTGATGGTTGGTTGATGTTGA  350

seq1  TTGCTGTTGGTCACACTTTGTTAAGTAGCTATGTGAAAAGAAGAAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGGTCACACTTTGTTAAGTAGCTATGTGAAAAGAAGAAACAAG  400

seq1  AAGAAGAAATTAGATATCCTGACAGAGATCAACTTTCCCCATGGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAATTAGATATCCTGACAGAGATCAACTTTCCCCATGGAACTCA  450

seq1  TTCCCCGTAACCAGCAGAAAGTATCTAATGATAGCGCTGCCCTCTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGTAACCAGCAGAAAGTATCTAATGATAGCGCTGCCCTCTTTCCC  500

seq1  CTCTATCATTTTTTTCTCTCCTACCTGGTATTAGGGGGTTGAAAGTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATTTTTTTCTCTCCTACCTGGTATTAGGGGGTTGAAAGTGTAG  550

seq1  AAGACATGGGTGGAAAAGAGTAGAATAAAGAACCCACAAAGTAGGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGGTGGAAAAGAGTAGAATAAAGAACCCACAAAGTAGGCAAAA  600

seq1  GTCTGGTTACAAATGCGTTGGATGTGTCATA-TTTGAGGGTG-TTAATTT  648
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GTCTGGTTACAAATGCGTTGGATGTGTCATATTTTGAGGGTGTTTAATTT  650

seq1  AAAGGTGCCAGCATGGGCAGCTTTATTGTTTTCATCCTTTCTGATTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCCAGCATGGGCAGCTTTATTGTTTTCATCCTTTCTGATTTCTA  700

seq1  TCCTTATCTGTTTGTTTTGGGGGCATTTGAATACTAATTCTGATGTGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCTGTTTGTTTTGGGGGCATTTGAATACTAATTCTGATGTGAAA  750

seq1  GGCAAATATTGAGATAGTCACACATGGCCTGTTCTTGTAGCTGCTCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATATTGAGATAGTCACACATGGCCTGTTCTTGTAGCTGCTCATCT  800

seq1  TCAGTCTTTCCTTGTTGGGTTCATAAGAAAAAAAATTACCAGAGAAACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTCCTTGTTGGGTTCATAAGAAAAAAAATTACCAGAGAAACTG  850

seq1  TCTGCTATTCTATTAACAATTCCAATAAAATTCTTGATGGGAAAATTTGA  898
      |||||||||||||| ||||||||||| |||||||||||||| ||||||||
seq2  TCTGCTATTCTATT-ACAATTCCAAT-AAATTCTTGATGGG-AAATTTGA  897

seq1  TCTTGGAACGTCCCTCAGCTGTAGATTGGGGGGATATTTGACTTCCCCAT  948
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TCTTGGAACGTCCCTCAGCTGTAGATTGGGGGGAAATTTGAC-TCCCCAT  946

seq1  AGACTCCGTGCACTTTTTCAAGTCAGTTTTCTCTTTTCATCAAACTGTGA  998
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACTCCGTGCACTTTTTCAAGTCAGTTTTCTCCTTTCATCAAACTGTGA  996

seq1  GTTTAATCCATCCAGAGAAAGAAGAATCTATTTAGAAGCAAGACTGAACT  1048
      ||||||| |||||||||||||||| |||||||||| ||| ||||||||||
seq2  GTTTAAT-CATCCAGAGAAAGAAG-ATCTATTTAG-AGC-AGACTGAACT  1042

seq1  GAAGCTGTGGATTATATCGCAGATCAGATAAACTTTATAGGGAACACAAC  1098
      |||||||||  |||| |||| ||||||||||||||||  ||  || || |
seq2  GAAGCTGTGATTTATTTCGC-GATCAGATAAACTTTAATGG--ACCCACC  1089

seq1  TAGAAAATCAGATTCTAAGCACATAGACCTGCTCGCTAGGATGGAGGGCC  1148
      |   ||||| ||| |  ||| |||||| |||||||||||||| || ||||
seq2  T--GAAATC-GATCC--AGC-CATAGATCTGCTCGCTAGGATTGAAGGCC  1133

seq1  AGAATAATTATTATATGGGAAAG  1171
         ||||||||  ||||||||||
seq2  --GATAATTAT--TATGGGAAAG  1152