BAC Information

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BAC

Clone NameB6Ng01-079K18
Chromosome9 (Build37)
Map Location 54,879,867 - 54,881,045
singlet/doubletsinglet
Overlap geneChrnb4
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3
Downstream geneEG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K18.bB6Ng01-079K18.g
ACCDH895013DH895014
length1,1401,152
definitionDH895013|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K18, 5' end.DH895014|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtgttccattagttagcaccaactgaaaagcatgggctgcaa
aagttccagaatcacaccgtgaggaggaaagaagagatctgctgagaaaa
ggaagacagagcctggtgctcagagagtagctcgccctgtggcctcagct
tcaacgggggtcttattagattcctctcaagcctccaactcagaatttta
accagatctcagggacctcctaggcccattgcagtcagaagcacagctct
gttgtatttgatcatattattctttctttcattctcttctccacttctct
ccctcatctctttgtggcttaaactgggcttgaactcactacatacctga
aggtggccttgaacttaaaaaaaaaaaaagtatcaattctttactcttag
aactggcctcatcgtccacaccatggccactctgagctgccctgcgcatc
gtattccttcttgtgtgtatcaccattcctactgaatcatgacttctcac
ctgtttttgttgtccttcaccacttcagtcaaaacactcagaaatgctat
tggatcttctcttttcttgagatagtgtttcatggagcccaggaactcac
tatgtagttgaggatgtccttaaatttctcttcctacctgtgctgcccca
gggcagggatttcaggcacatgctaccacctagcttttattctggtgctg
gggatcaaacctacggttttgtacaagttaggcgaaagccctatcactaa
gctgcatccccaggactataccttggatttctgtcttccagcctccacct
tccaagggttagaatgacatcctcgactgaggcgggatttctgggggaag
ctttaggaaccacttcttaaactcctgtgggtctctgtgcacatccaggt
tgagaaggtctcctgcacccctgcatgaactagccttcatcctaagcttg
aacttgcagcttcccagagggaagagcaggtagactcagtgggattgtat
cactgtgtctgcagcaattaacatcaggtgctctgcagatgacaaacact
ctgactcctcagggattctggaagtcttatccaatgggaagcaaggtcaa
gaaatcgctgactgtctggtcaacagctggcacagctgca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacgctcctccattgttggtg
ggattgcaggctcgtacaaccactctggaaatcagtctggcgattcctca
gaaaattgaacatagtactaccggaggatccagcaatacctctcctgggc
atatatcctgaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagtgacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggtctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctccaat
ggagagctagagaaagtagccaagagctaaagggatctgcacccttatag
gtggaacaacattatgactacagtacccggagctctgactctagctgcat
atgtatcaaagaatgctagtcgcatcactgaagagagtatgacacaaact
tttaattgccagtaggtacgcaggcaaggggagtgggtgggtaagggtga
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54879867_54881045
seq2: B6Ng01-079K18.b_49_1188 (reverse)

seq1  TGCAGCTGTGTGCCAGCTGTGTGACCCCAGACAAGTCAGACGATATCTCT  50
      ||||||  |||||||||||| |||  |||||| |||||| ||  || |||
seq2  TGCAGC--TGTGCCAGCTGT-TGA--CCAGAC-AGTCAG-CG--ATTTCT  41

seq1  GGGCCTCTGCTTCCCATTGTGGAATAAGGACTTTTCCCAGGATCCCTGGA  100
       | ||| |||||||||||   | |||| |||||   |||| |||||| ||
seq2  TGACCT-TGCTTCCCATT---GGATAA-GACTT---CCAGAATCCCT-GA  82

seq1  GGAGTCAGAGTTGTTTGTCCACTCCTGCCAGAGCACCTGATGTAAATTTG  150
      |||||||||| ||||||||  ||     ||||||||||||||| ||||  
seq2  GGAGTCAGAG-TGTTTGTCATCT----GCAGAGCACCTGATGTTAATT--  125

seq1  GCTTGGCAGGAACACAGGTGATTACAATCCCACTGAGTTCTACCTGGCTC  200
      |||  ||||  ||||| |||| ||||||||||||||| ||||||| ||| 
seq2  GCT--GCAG--ACACA-GTGA-TACAATCCCACTGAG-TCTACCT-GCT-  166

seq1  CTTCCCTCTTGGGGAAGCCCTGCAAGTTCCAAGCTTAGGATGAAGGCTAG  250
      |||||||||  ||||||  ||||||||| |||||||||||||||||||||
seq2  CTTCCCTCT--GGGAAG--CTGCAAGTT-CAAGCTTAGGATGAAGGCTAG  211

seq1  TTCATGCAGGGGTGCAGGAGACCTTCTCAACCTGGATGTGCACAGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAGGGGTGCAGGAGACCTTCTCAACCTGGATGTGCACAGAGACC  261

seq1  CACAGGAGTTTAAGAAGTGGTTCCTAAAGCTTCCCCCAGAAATCCCGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGTTTAAGAAGTGGTTCCTAAAGCTTCCCCCAGAAATCCCGCCT  311

seq1  CAGTCGAGGATGTCATTCTAACCCTTGGAAGGTGGAGGCTGGAAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGAGGATGTCATTCTAACCCTTGGAAGGTGGAGGCTGGAAGACAGA  361

seq1  AATCCAAGGTATAGTCCTGGGGATGCAGCTTAGTGATAGGGCTTTCGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGGTATAGTCCTGGGGATGCAGCTTAGTGATAGGGCTTTCGCCT  411

seq1  AACTTGTACAAAACCGTAGGTTTGATCCCCAGCACCAGAATAAAAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTACAAAACCGTAGGTTTGATCCCCAGCACCAGAATAAAAGCTAG  461

seq1  GTGGTAGCATGTGCCTGAAATCCCTGCCCTGGGGCAGCACAGGTAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCATGTGCCTGAAATCCCTGCCCTGGGGCAGCACAGGTAGGAAG  511

seq1  AGAAATTTAAGGACATCCTCAACTACATAGTGAGTTCCTGGGCTCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAAGGACATCCTCAACTACATAGTGAGTTCCTGGGCTCCATGA  561

seq1  AACACTATCTCAAGAAAAGAGAAGATCCAATAGCATTTCTGAGTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCTCAAGAAAAGAGAAGATCCAATAGCATTTCTGAGTGTTTTG  611

seq1  ACTGAAGTGGTGAAGGACAACAAAAACAGGTGAGAAGTCATGATTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGGTGAAGGACAACAAAAACAGGTGAGAAGTCATGATTCAGTA  661

seq1  GGAATGGTGATACACACAAGAAGGAATACGATGCGCAGGGCAGCTCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGATACACACAAGAAGGAATACGATGCGCAGGGCAGCTCAGAG  711

seq1  TGGCCATGGTGTGGACGATGAGGCCAGTTCTAAGAGTAAAGAATTGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGGTGTGGACGATGAGGCCAGTTCTAAGAGTAAAGAATTGATAC  761

seq1  TTTTTTTTTTTTTAAGTTCAAGGCCACCTTCAGGTATGTAGTGAGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAAGTTCAAGGCCACCTTCAGGTATGTAGTGAGTTCAA  811

seq1  GCCCAGTTTAAGCCACAAAGAGATGAGGGAGAGAAGTGGAGAAGAGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTAAGCCACAAAGAGATGAGGGAGAGAAGTGGAGAAGAGAATG  861

seq1  AAAGAAAGAATAATATGATCAAATACAACAGAGCTGTGCTTCTGACTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAATAATATGATCAAATACAACAGAGCTGTGCTTCTGACTGCA  911

seq1  ATGGGCCTAGGAGGTCCCTGAGATCTGGTTAAAATTCTGAGTTGGAGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTAGGAGGTCCCTGAGATCTGGTTAAAATTCTGAGTTGGAGGCT  961

seq1  TGAGAGGAATCTAATAAGACCCCCGTTGAAGCTGAGGCCACAGGGCGAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAATCTAATAAGACCCCCGTTGAAGCTGAGGCCACAGGGCGAGC  1011

seq1  TACTCTCTGAGCACCAGGCTCTGTCTTCCTTTTCTCAGCAGATCTCTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTGAGCACCAGGCTCTGTCTTCCTTTTCTCAGCAGATCTCTTCT  1061

seq1  TTCCTCCTCACGGTGTGATTCTGGAACTTTTGCAGCCCATGCTTTTCAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCACGGTGTGATTCTGGAACTTTTGCAGCCCATGCTTTTCAGT  1111

seq1  TGGTGCTAACTAATGGAACACCAGAATTC  1179
      |||||||||||||||||||||||||||||
seq2  TGGTGCTAACTAATGGAACACCAGAATTC  1140