BAC Information

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BAC

Clone NameB6Ng01-079K20
Chromosome9 (Build37)
Map Location 40,478,337 - 40,639,840
singlet/doubletdoublet
Overlap gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8
Upstream geneOlfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
Downstream geneBsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K20.bB6Ng01-079K20.g
ACCDH895017DH895018
length4641,063
definitionDH895017|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K20, 5' end.DH895018|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,639,370 - 40,639,840)(40,478,337 - 40,479,415)
sequence
aaagtcagggctggagagatggctcagtggttaagagtactgttgctgtg
attaaaacacaaaggaactgagttcaaatcccagcaaccacatggtggct
cacaaccatttgttttgggtttggtttggtttggtttggttttggtttgg
ttttggtttttcgaaacagggtttctctgtgtagccctggctgtcctgga
actcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctc
tgcctcctgagtgctaggattaaagacgtgcaccaccacacctggctcat
atacatttttttaaaaatccaaacatcaaaaagtaaacacacagctaaag
aataaaaaggaagggaaagaggaagaggaggaggagggggtgagattttt
gtcagcagtttatagactggcttagttcctatggtttccaggataatcag
gcttttgcgttttg
gaattccagaagattaagacagggagatctctaaattcaaggtcatcttg
gattaagggcgtggtggcacacacctttaatctgggtcacatcttcagct
ggagacctacaaaaggacattgaaataaaggaagattgactctctcttct
tcacctgcttgcctcgtgggactgaacaactgctagatccttggacttcc
attcacagctgctgctgaccattgttgggagttggactacagactgtaaa
tcatcaacaaattcccatactatatagatactacccataagttatgtgac
tctagagaaccctgactaatacagaaatgttcagaacagaactcacaaga
gctacaaccatgacagaagcagctgggatggagacaactccgcatttgtc
ctgcatggatagaaactctgggttcacctgtgagcagtattgggaactaa
gaaagcacttcaaggcagacgccaaccctaaggaggagactctggagacc
ttggctgatgcatccaaactggcaaaagaatgcatttgtttcttcaagag
gaggcatgaaatgaggctcaagcggttgtccaaggcccacaagaattggg
aaatgtgtggtcgccaatgtccatcacgagagaccaccaggcagaacccc
aaggaaacctctcaaaatgcccctggactccccgaagttttggaagcctt
gaagagtctcacactttcttctgggtaccaaagcagagacgatatgtcac
aggatttctgacgtttcaacttccttgttggggcaggggctgttgggatt
catgtctatggaaggtgcattaataataaagcttgcatcacagaaactaa
aaaaatgctctttaataagaaatattacaacccttatcattttaatcttg
gaaagctgatccaagaataatttcttggcatcatcgcatggaatcagact
tctcccaaaggaaacttacctataatttttcctgatgtgttaaaaaaaaa
aaaacttacatagcatgttcatcaatgaaaacgatatttgccctttgtag
aatatacttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40639370_40639840
seq2: B6Ng01-079K20.b_45_514 (reverse)

seq1  CAAAACACAAAAGCCTGATTATCCTGGCTCCCATCGGGCCTCTGCCAGTC  50
      |||||| ||||||||||||||||||||   |||| ||  ||  |||||||
seq2  CAAAACGCAAAAGCCTGATTATCCTGGAAACCATAGGAACTAAGCCAGTC  50

seq1  TCTACACTGCTGACTTGGAATCTCACCCCCTCCTCCTCCTCTTCCTCTTT  100
      | || |||||||||    ||||||||||||||||||||||||||||||||
seq2  TATAAACTGCTGAC-AAAAATCTCACCCCCTCCTCCTCCTCTTCCTCTTT  99

seq1  CCCTTCCTTTTTATTCTTTAGCTGTGTGTTTACTTTTTGATGTTTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTTTTATTCTTTAGCTGTGTGTTTACTTTTTGATGTTTGGATT  149

seq1  TTTAAAAAAATGTATATGAGCCAGGTGTGGTGGTGCACGTCTTTAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAATGTATATGAGCCAGGTGTGGTGGTGCACGTCTTTAATCCT  199

seq1  AGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG  249

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  299

seq1  TTCGAAAAACCAAAACCAAACCAAAACCAAACCAAACCAAACCAAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAAAACCAAAACCAAACCAAAACCAAACCAAACCAAACCAAACCCA  349

seq1  AAACAAATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGTT  399

seq1  CCTTTGTGTTTTAATCACAGCAACAGTACTCTTAACCACTGAGCCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTTTTAATCACAGCAACAGTACTCTTAACCACTGAGCCATCTC  449

seq1  TCCAGCCCTGACTTTGAATTC  471
      |||||||||||||||||||||
seq2  TCCAGCCCTGACTTTGAATTC  470

seq1: chr9_40478337_40479415
seq2: B6Ng01-079K20.g_68_1130

seq1  GAATTCCAGAAGATTAAGACAGGGAGATCTCTAAATTCAAGGTCATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGGAGATCTCTAAATTCAAGGTCATCTTG  50

seq1  GATTAAGGGCGTGGTGGCACACACCTTTAATCTGGGTCACATCTTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGGCGTGGTGGCACACACCTTTAATCTGGGTCACATCTTCAGCT  100

seq1  GGAGACCTACAAAAGGACATTGAAATAAAGGAAGATTGACTCTCTCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTACAAAAGGACATTGAAATAAAGGAAGATTGACTCTCTCTTCT  150

seq1  TCACCTGCTTGCCTCGTGGGACTGAACAACTGCTAGATCCTTGGACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTTGCCTCGTGGGACTGAACAACTGCTAGATCCTTGGACTTCC  200

seq1  ATTCACAGCTGCTGCTGACCATTGTTGGGAGTTGGACTACAGACTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCTGCTGCTGACCATTGTTGGGAGTTGGACTACAGACTGTAAA  250

seq1  TCATCAACAAATTCCCATACTATATAGATACTACCCATAAGTTATGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACAAATTCCCATACTATATAGATACTACCCATAAGTTATGTGAC  300

seq1  TCTAGAGAACCCTGACTAATACAGAAATGTTCAGAACAGAACTCACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAACCCTGACTAATACAGAAATGTTCAGAACAGAACTCACAAGA  350

seq1  GCTACAACCATGACAGAAGCAGCTGGGATGGAGACAACTCCGCATTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACCATGACAGAAGCAGCTGGGATGGAGACAACTCCGCATTTGTC  400

seq1  CTGCATGGATAGAAACTCTGGGTTCACCTGTGAGCAGTATTGGGAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGATAGAAACTCTGGGTTCACCTGTGAGCAGTATTGGGAACTAA  450

seq1  GAAAGCACTTCAAGGCAGACGCCAACCCTAAGGAGGAGACTCTGGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACTTCAAGGCAGACGCCAACCCTAAGGAGGAGACTCTGGAGACC  500

seq1  TTGGCTGATGCATCCAAACTGGCAAAAGAATGCATTTGTTTCTTCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGATGCATCCAAACTGGCAAAAGAATGCATTTGTTTCTTCAAGAG  550

seq1  GAGGCATGAAATGAGGCTCAAGCGGTTGTCCAAGGCCCACAAGAATTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGAAATGAGGCTCAAGCGGTTGTCCAAGGCCCACAAGAATTGGG  600

seq1  AAATGTGTGGTCGCCAATGTCCATCACGAGAGACCACCAGGCAGAACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGGTCGCCAATGTCCATCACGAGAGACCACCAGGCAGAACCCC  650

seq1  AAGGAAACCTCTCAAAATGCCCCTGGACTCCCCGAAGTTTTGGAAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCTCTCAAAATGCCCCTGGACTCCCCGAAGTTTTGGAAGCCTT  700

seq1  GAAGAGTCTCACACTTTCTTCTGGGTACCAAAGCAGAGACGATATGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCTCACACTTTCTTCTGGGTACCAAAGCAGAGACGATATGTCAC  750

seq1  AGGATTTCTGACGTTTCAACTTCCTTGTTGGGGCAGGGGCTGTTGGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTGACGTTTCAACTTCCTTGTTGGGGCAGGGGCTGTTGGGATT  800

seq1  CATGTCTATGGAAGGTGCATTAATAATAAAGCTTGCATTCACAGAAACTA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATGTCTATGGAAGGTGCATTAATAATAAAGCTTGCA-TCACAGAAACTA  849

seq1  AAAAAATGCTCTTTAATAAGAAATATTACAACCCTTATCATTTTAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCTCTTTAATAAGAAATATTACAACCCTTATCATTTTAATCTT  899

seq1  -GAAAGCTGATCCAAGAATAATTTCTTGGCAATCATCGCATGGAATCAGG  949
       ||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GGAAAGCTGATCCAAGAATAATTTCTTGGC-ATCATCGCATGGAATCA-G  947

seq1  ACTTCTCCCCCAAAAGGAAAACTTACCTATAAATTTTTCCCTGATGTGTT  999
      |||||||||   ||||| ||||||||||||||  |||| |||||||||||
seq2  ACTTCTCCC---AAAGG-AAACTTACCTATAA--TTTTTCCTGATGTGTT  991

seq1  AAAAAAAAAAAAAACTTACAATAGCCAATGTTTCAATCAATGAAAAACGA  1049
       |||||||||||||||||| |||||  |||||   ||||||| |||||||
seq2  -AAAAAAAAAAAAACTTAC-ATAGC--ATGTT--CATCAATG-AAAACGA  1034

seq1  TATTGTGCCCCTTTGTAG-ATATACTTGTTA  1079
      |||| || |||||||||| ||||||||||||
seq2  TATT-TG-CCCTTTGTAGAATATACTTGTTA  1063