BAC Information

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BAC

Clone NameB6Ng01-079N17
Chromosome9 (Build37)
Map Location 84,157,102 - 84,343,019
singlet/doubletdoublet
Overlap geneEG666669
Upstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
Downstream geneLOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N17.bB6Ng01-079N17.g
ACCDH895149DH895150
length1,2031,148
definitionDH895149|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N17, 5' end.DH895150|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,341,653 - 84,343,019)(84,157,102 - 84,158,274)
sequence
gaattcagtataagctgagcgatctggctggtctggtatgcttgggagga
cactgatcagatggcactgttgcctgaatcaagaattcaacctgtcttat
ctgtgtctctcctgccctgtctgacccagagcctggtttcacaggtaaag
aattctcacagcagactaaagtgtaaggctcaagatctcttaaagctttc
aagtattatcagttgtattccattggactactgataaacattgaaaccag
gctctaggaaggatttggaaagaatgcagacatcacatctggttatgtgg
aatgaaacagaaataggctttacttgcaaggacagcacaggctagcacca
aagaaagacttaagaaaacagatgtatttccattggacaaaaaaaacttc
atttctttattgtgcatgaaccatccttgtaatgaaaatgcatatattaa
tgggcattgttgttgtaaaaagtttatacaaagaagcagaacaatacaca
gatacataacaatgccctaataaaaataacatgagaaattctgtatattt
ctgggtgataagattatagtagaatatttttagacatttggaattttcta
gttttttcaccaaaactctccaaaaggctattcctattagtctctactat
caataaagaactttattcaaataaataatataacacttgaaatagtgttt
ttcctaaatgctcaaaaccatctaacacatttcctaatgtgttttttttt
tcaaactatactcaaaatacgctcaaactctcaagaccatccaacacatt
tcctaatgtgtttcttttcaagccgtactcggaatacactcaaacttgac
tttattagtcaaaacattctctgttccaactcttagataatcagctcaaa
ataattgcatttggggaaaaaagaagatgaaaaatattggtttaagtaac
agaaaagtccaaagatgattctgaattcagatattagttacagtgtcact
ctgagaattttgtcatgcccttgaagagtgaatttgcaagccagagtaat
tatccattggtaattttgggtgcattaacattttattgtgggggggggaa
tcattgaacagaatcttcctcgtgagcttgagttaattggtagtcttata
ctccattatcaagaagcaatgccactaaggtccagtgtaactgttctaaa
att
gaattccttctctacactcaatgaactgggaaatatccttgattaattga
tgaaaagattaatgacaagaaatacaacatagaataaaatgcctctctgt
ggagacctttagtaaacctctatactggtgttctctatgtcatttatttt
attttattttattttattttaattaggtattttcttcatttacatttcca
atgctatcccaaaagtcacccataccctccccccactcctctacccaccc
actcctacttcttggccctggcgttcccctgtactgaggcatataaagtt
tgcaagacccattgcatacactagcaatattttgctgaaaggaccctgat
atagttgtctcttttgaggctgtgccagggcctagcaaacacagaagtgg
atgctcacagtcagctattggatggatcacagtacccccaatggaggagc
tagggaaagtacccaaggagctaaaggggtctgcaaccctataggtggaa
caaccatatgaactaaccagtatcccctggagctcgtgtctctagctgca
tatgtatctatgtcattctttatcccatagagggtcattaaaagaggttg
ggttaggagttgaatggggagcaagtgtactcttgtattaataattcatc
gtatgaacatggctatttccaggatgccaatatctcaagctgagaggaat
ggtgtaaatgtaacttttattcaccagatgtaattgtcatcttgtaaggc
caccctttctagttctttctgaactctggctagctggttcaactcagctg
ttcaggctcaaaactcctctccaaggagcctgatcaaactgacttctttt
gacttctgactgaatttctctgcttggcctcatactaatttggcatatgt
gtatatcttctggctttctcattctctggatcattctgtctcatctgtga
ccagtttctgtaaaactgtcctgattaaactgcttctccttctgtctgcc
tgtttgccccccacctcccacctgtttcctcgaagtacctttcttcctgg
tatcttctctggagaattgggtttatcctctctctgactcatttggacat
cttcctattgcactttgctgaccctcatacatctccaactggctgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84341653_84343019
seq2: B6Ng01-079N17.b_48_1250 (reverse)

seq1  AATTTTAGAACAAGTAGGAAATCCCAAAGCTCATCTCACATTTATATCTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATCTTTATGAGAATTATTGAAGTATGTACAGACTTCTTTAGTCATTTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTATATTTAAAAAGCAAGTTAAATTTGAGAAACCATAGTTTAAAATATTT  150
                                                 ||| |||
seq2  -------------------------------------------AAT-TTT  6

seq1  AAGGGAACAAATGTATAACTACA-TGGAAAACCTTAGTTGCAAATGGCTT  199
      |   |||||   ||     |||| |||   |||||||| ||  || ||  
seq2  A---GAACA---GT-----TACACTGG---ACCTTAGTGGC--ATTGC--  38

seq1  TTCTTGATAAATGGAGTATAAAGACTTACCAATTTAACTTCAAGCTCAAC  249
      |||||||| |||||||||| ||||| |||||| ||||| |||||||| ||
seq2  TTCTTGAT-AATGGAGTAT-AAGAC-TACCAA-TTAAC-TCAAGCTC-AC  82

seq1  GAAGAAGTATCTGTCCATTGA-TACCCCCCCCACAATTAAATGTTAATGC  298
      || ||||  ||||| || ||| | ||||||||||||| ||||||||||||
seq2  GAGGAAGATTCTGTTCAATGATTCCCCCCCCCACAATAAAATGTTAATGC  132

seq1  A-CCAAAATTACCAATGGATAATTACTCTGGCTTGCAAATTCACTC-TCA  346
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCCAAAATTACCAATGGATAATTACTCTGGCTTGCAAATTCACTCTTCA  182

seq1  AGGGCATGACAAAA-TCTCAGAGTGACACTGTAACTAATATCTGAATTCA  395
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGGCATGACAAAATTCTCAGAGTGACACTGTAACTAATATCTGAATTCA  232

seq1  GAATCATCTTTGGACTTTTCTGTTACTTAAACCAATATTTTTCATCTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATCATCTTTGGACTTTTCTGTTACTTAAACCAATATTTTTCATCTTC-  281

seq1  TTTTTTCCCCAAATGCAATTATTTTGAGCTGATTATCTAAGAGTTGGAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCCAAATGCAATTATTTTGAGCTGATTATCTAAGAGTTGGAAC  331

seq1  AGAGAATGTTTTGACTAATAAAGTCAAGTTTGAGTGTATTCCGAGTACGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTTTTGACTAATAAAGTCAAGTTTGAGTGTATTCCGAGTACGG  381

seq1  CTTGAAAAGAAACACATTAGGAAATGTGTTGGATGGTCTTGAGAGTTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGAAACACATTAGGAAATGTGTTGGATGGTCTTGAGAGTTTGA  431

seq1  GCGTATTTTGAGTATAGTTTGAAAAAAAAAACACATTAGGAAATGTGTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATTTTGAGTATAGTTTGAAAAAAAAAACACATTAGGAAATGTGTTA  481

seq1  GATGGTTTTGAGCATTTAGGAAAAACACTATTTCAAGTGTTATATTATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTGAGCATTTAGGAAAAACACTATTTCAAGTGTTATATTATTT  531

seq1  ATTTGAATAAAGTTCTTTATTGATAGTAGAGACTAATAGGAATAGCCTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATAAAGTTCTTTATTGATAGTAGAGACTAATAGGAATAGCCTTT  581

seq1  TGGAGAGTTTTGGTGAAAAAACTAGAAAATTCCAAATGTCTAAAAATATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTTTGGTGAAAAAACTAGAAAATTCCAAATGTCTAAAAATATT  631

seq1  CTACTATAATCTTATCACCCAGAAATATACAGAATTTCTCATGTTATTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATAATCTTATCACCCAGAAATATACAGAATTTCTCATGTTATTTT  681

seq1  TATTAGGGCATTGTTATGTATCTGTGTATTGTTCTGCTTCTTTGTATAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGCATTGTTATGTATCTGTGTATTGTTCTGCTTCTTTGTATAAA  731

seq1  CTTTTTACAACAACAATGCCCATTAATATATGCATTTTCATTACAAGGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACAACAACAATGCCCATTAATATATGCATTTTCATTACAAGGAT  781

seq1  GGTTCATGCACAATAAAGAAATGAAGTTTTTTTTGTCCAATGGAAATACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGCACAATAAAGAAATGAAGTTTTTTTTGTCCAATGGAAATACA  831

seq1  TCTGTTTTCTTAAGTCTTTCTTTGGTGCTAGCCTGTGCTGTCCTTGCAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTTAAGTCTTTCTTTGGTGCTAGCCTGTGCTGTCCTTGCAAG  881

seq1  TAAAGCCTATTTCTGTTTCATTCCACATAACCAGATGTGATGTCTGCATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTATTTCTGTTTCATTCCACATAACCAGATGTGATGTCTGCATT  931

seq1  CTTTCCAAATCCTTCCTAGAGCCTGGTTTCAATGTTTATCAGTAGTCCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATCCTTCCTAGAGCCTGGTTTCAATGTTTATCAGTAGTCCAA  981

seq1  TGGAATACAACTGATAATACTTGAAAGCTTTAAGAGATCTTGAGCCTTAC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACAACTGATAATACTTGAAAGCTTTAAGAGATCTTGAGCCTTAC  1031

seq1  ACTTTAGTCTGCTGTGAGAATTCTTTACCTGTGAAACCAGGCTCTGGGTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTCTGCTGTGAGAATTCTTTACCTGTGAAACCAGGCTCTGGGTC  1081

seq1  AGACAGGGCAGGAGAGACACAGATAAGACAGGTTGAATTCTTGATTCAGG  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGCAGGAGAGACACAGATAAGACAGGTTGAATTCTTGATTCAGG  1131

seq1  CAACAGTGCCATCTGATCAGTGTCCTCCCAAGCATACCAGACCAGCCAGA  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGCCATCTGATCAGTGTCCTCCCAAGCATACCAGACCAGCCAGA  1181

seq1  TCGCTCAGCTTATACTGAATTC  1367
      ||||||||||||||||||||||
seq2  TCGCTCAGCTTATACTGAATTC  1203

seq1: chr9_84157102_84158274
seq2: B6Ng01-079N17.g_70_1217

seq1  GAATTCCTTCTCTACACTCAATGAACTGGGAAATATCCTTGATTAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCTACACTCAATGAACTGGGAAATATCCTTGATTAATTGA  50

seq1  TGAAAAGATTAATGACAAGAAATACAACATAGAATAAAATGCCTCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATTAATGACAAGAAATACAACATAGAATAAAATGCCTCTCTGT  100

seq1  GGAGACCTTTAGTAAACCTCTATACTGGTGTTCTCTATGTCATTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTTTAGTAAACCTCTATACTGGTGTTCTCTATGTCATTTATTTT  150

seq1  ATTTTATTTTATTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCCA  200

seq1  ATGCTATCCCAAAAGTCACCCATACCCTCCCCCCACTCCTCTACCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCAAAAGTCACCCATACCCTCCCCCCACTCCTCTACCCACCC  250

seq1  ACTCCTACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTT  300

seq1  TGCAAGACCCATTGCATACACTAGCAATATTTTGCTGAAAGGACCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACCCATTGCATACACTAGCAATATTTTGCTGAAAGGACCCTGAT  350

seq1  ATAGTTGTCTCTTTTGAGGCTGTGCCAGGGCCTAGCAAACACAGAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTCTCTTTTGAGGCTGTGCCAGGGCCTAGCAAACACAGAAGTGG  400

seq1  ATGCTCACAGTCAGCTATTGGATGGATCACAGTACCCCCAATGGAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAGTCAGCTATTGGATGGATCACAGTACCCCCAATGGAGGAGC  450

seq1  TAGGGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAA  500

seq1  CAACCATATGAACTAACCAGTATCCCCTGGAGCTCGTGTCTCTAGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATATGAACTAACCAGTATCCCCTGGAGCTCGTGTCTCTAGCTGCA  550

seq1  TATGTATCTATGTCATTCTTTATCCCATAGAGGGTCATTAAAAGAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTATGTCATTCTTTATCCCATAGAGGGTCATTAAAAGAGGTTG  600

seq1  GGTTAGGAGTTGAATGGGGAGCAAGTGTACTCTTGTATTAATAATTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAGTTGAATGGGGAGCAAGTGTACTCTTGTATTAATAATTCATC  650

seq1  GTATGAACATGGCTATTTCCAGGATGCCAATATCTCAAGCTGAGAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACATGGCTATTTCCAGGATGCCAATATCTCAAGCTGAGAGGAAT  700

seq1  GGTGTAAATGTAACTTTTATTCACCAGATGTAATTGTCATCTTGTAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGTAACTTTTATTCACCAGATGTAATTGTCATCTTGTAAGGC  750

seq1  CACCCTTTCTAGTTCTTTCTGAACTCTGGCTAGCTGGTTCAACTCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTCTAGTTCTTTCTGAACTCTGGCTAGCTGGTTCAACTCAGCTG  800

seq1  TTCAGGCTCAAAACTCCTCTCCAAGGAGCCTGATCAAACTGACTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCAAAACTCCTCTCCAAGGAGCCTGATCAAACTGACTTCTTTT  850

seq1  GACTTCTGACTGAATTTCTCTGCTTGGCCTCATACTAATTTTGGCAATAT  900
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GACTTCTGACTGAATTTCTCTGCTTGGCCTCATACTAA-TTTGGC-ATAT  898

seq1  GTTGTATAATCTTCTGGCTTTCTCATTCTCTGGATCATTCTGTCTTCATC  950
      | ||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  G-TGTAT-ATCTTCTGGCTTTCTCATTCTCTGGATCATTCTGTC-TCATC  945

seq1  TGTGACCAGTTTCTGTAAAACTGTCCTGATTAAACTGCCTCCTCTCTCTG  1000
      ||||||||||||||||||||||||||||||||||||| || |||  ||||
seq2  TGTGACCAGTTTCTGTAAAACTGTCCTGATTAAACTG-CTTCTCCTTCTG  994

seq1  TCTGCCTGTCTGCCCCCCCACTCCCACCTGTGTTCTCTGAAGTTACCTTT  1050
      ||||||||| ||||||||  ||||||||||| | ||| |||| |||||||
seq2  TCTGCCTGTTTGCCCCCCACCTCCCACCTGTTTCCTC-GAAG-TACCTTT  1042

seq1  CTTCCCTGTATCTTCTCATGAGAATTGTGTTTATCCTCTCTCTGACTCAT  1100
      |||||  ||||||||||  |||||||| ||||||||||||||||||||||
seq2  CTTCCTGGTATCTTCTCTGGAGAATTGGGTTTATCCTCTCTCTGACTCAT  1092

seq1  TTTGTCAAATCTTTCTCTAATTTGTCACTTTGTCTGACCCTCAATTACAT  1150
      || |  | ||||| ||   |||   ||||||| ||||||||||  |||||
seq2  TTGG--ACATCTTCCT---ATT--GCACTTTG-CTGACCCTCA--TACAT  1132

seq1  ATCACTTTCAAACATGGCTGCTT  1173
       ||     |||   |||||||||
seq2  CTC-----CAA--CTGGCTGCTT  1148