BAC Information

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BAC

Clone NameB6Ng01-080B02
Chromosome9 (Build37)
Map Location 82,904,356 - 83,029,062
singlet/doubletdoublet
Overlap geneLOC100039144, Hmgn3
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1, Phip
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B02.bB6Ng01-080B02.g
ACCDH895307DH895308
length1,1951,085
definitionDH895307|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B02, 5' end.DH895308|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,904,356 - 82,905,370)(83,027,598 - 83,029,062)
sequence
gaattcagttctgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcactaaggaagaaagaagtttc
tgaccgtaggagaaactaaaatagatatttagaattatagctgagttaca
cctatatacaggaatatacaatggtttaggaagtagattgggctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
attagaaccatgacttgggtgtgaaagcccttgccctaggagagtaaaga
actcacacctggcttctaagactatagctgaccttagatagggctgactt
tgtctcagttgttttattgcccagttcctgccagtctttgtgttttcatt
cctctgttctgtgtaagagtcattaagcatccggttacctcatttgtacc
ttgcaggtatgtcacccaacttccttattgtcttctgcataaaaagtctg
atgcttgtgttgaaaaatacattcagattccacacgaactctcctgtgtg
cttctgtttgtcactcatcctacactttgtccacccgcgactagagaccc
gttcctcgcagacaaaagggcccagagagtctgcggcagtcagggtgttt
taccacagcaacagaaaagtaacttgtataactaatttttgttcctattc
tctgaaaaataaattgaaagttatcatggaaatatagtacagatataaga
aagactcgaccagtacagttgtttgttaaagatgaaaagagatagacaat
taaaagataggaaatctccttttctaaagaaaaatagacacaaatcaatt
ttgttttgtcatgaaggatacaatcacagaactagatatgctaagtactg
gaattttttttaaaaactaggtaattgacttggctaacataaaaaatttt
ttttttctaattatttttcatctaagaatgcaactatgtgaatgtattac
tagtctcagtattttaagttgaagtaattaaattgatgtttcttgtaata
tgcttgttacctaagcagaataatcttctgagtactgtatagaataccat
gcatttatgttttactttggaataacggggtatccggtttctttaactac
atatttttcaagtttaccttaaatattaatcccgctttggacatt
gaattcactcaaatcccactgtagttgctgccgaaggtatttacggactc
ctgtcttcttacatcttatgaacgtgcttaggagcagccttgtaggtgtg
cccaagagaaatgcatgcttggccacacatacagaaagtgacacttacat
taaaaaagtagggaaatagagaaaatggcttccatctttaaaatggaatt
gatatcagtaatgaacatgggcatctgtagtattgttcagatttaaataa
ctaacagtattgagtgcctggctgtgccaggtttgagctgtgggttttat
gctctttgggctctatagttaagtgaagcagtgttatgagaaataagtgc
atagaggacgtgttatactgcagtttcatgaaaaacacatgtttttctgt
caatgcgacattccggggacttcacattgctttataaccttaatcccctc
atccactcatcttcatcttatacactgaagcaccagcccctgacactttc
ccaaggcccttgtgagctgcggggaattcagttctagaggctccagagcc
tgtgatctcaaccatgggaagggaatattggaattctctgagttgaagat
cactcctctgggtcacaaggctagaaaggtagaagaccaacattctaacc
cataattttttttcttttaaccactataccatcaaatttctcacatccat
ttatttctaataagttcagcttttaaaatttaaactaaggtacctaaaga
attaaataagttatataaataacttattgctcattgatttgaaatattag
ctttattgaaatgcaggctgttgtcatcatttctaggtgcattcgtacac
acatgcacacacacacacacacacacacacacacacacacacacacacac
acacacaaattccccaccagaaaattgatttctttgtctctatattttcc
catttccacaataaaaacatcaattttgcatgctcaagatacagtgttgt
tccttaatttgtataggtaataataaaaggtgttcctcctattgcctaca
aacatgaaaataacctgaattatttgtcagagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82904356_82905370
seq2: B6Ng01-080B02.b_228_1240

seq1  GTAGATTGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAG  50

seq1  CTAGAACGGAACTCCCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACGGAACTCCCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTT  100

seq1  GCCCTAGGAGAGTAAAGAACTCACACCTGGCTTCTAAGACTATAGCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGAGAGTAAAGAACTCACACCTGGCTTCTAAGACTATAGCTGAC  150

seq1  CTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCC  200

seq1  AGTCTTTGTGTTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTGTTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCC  250

seq1  GGTTACCTCATTTGTACCTTGCAGGTATGTCACCCAACTTCCTTATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTCATTTGTACCTTGCAGGTATGTCACCCAACTTCCTTATTGTC  300

seq1  TTCTGCATAAAAAGTCTGATGCTTGATTTGAAAAATACATTCAGATTCCA  350
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TTCTGCATAAAAAGTCTGATGCTTGTGTTGAAAAATACATTCAGATTCCA  350

seq1  CACGAACTCTCCTGTGTGCTTCTGTTTGTCACTCATCCTACACTTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACTCTCCTGTGTGCTTCTGTTTGTCACTCATCCTACACTTTGTCC  400

seq1  ACCCGCGACTAGAGACCCGTTCCTCGCAGACAAAAGGGCCCAGAGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCGACTAGAGACCCGTTCCTCGCAGACAAAAGGGCCCAGAGAGTCT  450

seq1  GCGGCAGTCAGGGTGTTTTACCACAGCAACAGAAAAGTAACTTGTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGTCAGGGTGTTTTACCACAGCAACAGAAAAGTAACTTGTATAAC  500

seq1  TAATTTTTGTTCCTATTCTCTGAAAAATAAATTGAAAGTTATCATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGTTCCTATTCTCTGAAAAATAAATTGAAAGTTATCATGGAAA  550

seq1  TATAGTACAGATATAAGAAAGACTCGACCAGTACAGTTGTTTGTTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACAGATATAAGAAAGACTCGACCAGTACAGTTGTTTGTTAAAGA  600

seq1  TGAAAAGAGATAGACAATTAAAAGATAGGAAATCTCCTTTTCTAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGATAGACAATTAAAAGATAGGAAATCTCCTTTTCTAAAGAAA  650

seq1  AATAGACACAAATCAATTTTGTTTTGTCATGAA-GATACAATCACAGAAC  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATAGACACAAATCAATTTTGTTTTGTCATGAAGGATACAATCACAGAAC  700

seq1  TAGATATGCTAAGTTACTGGAATTTTTTTTAAAAAACTAGGTAATTGACT  749
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TAGATATGCTAAG-TACTGGAATTTTTTTT-AAAAACTAGGTAATTGACT  748

seq1  TGGCTAACATAAAAAAATTTTTTTTTCTAATTA-TTTTCATCTAAGAATG  798
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  TGGCTAACATAAAAAATTTTTTTTTTCTAATTATTTTTCATCTAAGAATG  798

seq1  CAAACTATGTGAATGTATTACTAGTCTTCAGTATTTTAAGTTGAAGTAAT  848
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  C-AACTATGTGAATGTATTACTAGTC-TCAGTATTTTAAGTTGAAGTAAT  846

seq1  TAAATTGATGTATTCTTGTTAATATGCTTG-TACCTAAGCAG-ATAATC-  895
      ||||||||||| |||||| ||||||||||| ||||||||||| |||||| 
seq2  TAAATTGATGT-TTCTTG-TAATATGCTTGTTACCTAAGCAGAATAATCT  894

seq1  TCTGAGTACTTGTATAGATACCCATGCATTTATGTGTAGTTTTGGAAATA  945
      ||||||||| ||||||||   |||||||||||||| |   ||||| ||||
seq2  TCTGAGTAC-TGTATAGAATACCATGCATTTATGTTTTACTTTGG-AATA  942

seq1  ACGTGGTAT-CTGTTTCTTTAACATACATA-TTTTCAAGTT--ACTTAAA  991
      ||| ||||| | ||||||||||| |||||| ||||||||||   ||||||
seq2  ACGGGGTATCCGGTTTCTTTAAC-TACATATTTTTCAAGTTTACCTTAAA  991

seq1  TATAAATTCCCGCTTTTTGACATT  1015
      ||| || |||||| ||| ||||||
seq2  TATTAA-TCCCGC-TTTGGACATT  1013

seq1: chr9_83027598_83029062
seq2: B6Ng01-080B02.g_68_1152 (reverse)

seq1  ATTCTCTGACATCCAAACACTATTGTGATGTGTTCCCATAATAACTGTAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTAAATTAAAAAAGTGTTTTATTTTAAAAGTACAACTTACACCTCAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAAAGACAAAAAAAGATAAAAAACAAACACATTTCAGTATAAAGTATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTCTCTGTAGGGAGGGTCAAATAATAGCATGATTTGAAACCAATTATT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTTGTCTATTTTAAATTTATGTTTGTTATTAATGCAATAGCAATCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCTATGTCTGACAGATTTTTCAGAGATTAACCTATTTCATTCTTATTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GATGTATTCTTAAAACAAAAATACCTTTCTATTTTCTAAATCCGACATCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTAATGGTGGTTTAGTATTTACGCTGTAATCTCTGACACAATAATCAA  400
                                   | ||||||||| ||||||  |
seq2  -----------------------------ATTCTCTGACA-AATAATTCA  20

seq1  GTGTATTTTCATGTTTGTA-GCCATA-GAGGAACACC-TCTATTACTACC  447
      |  |||||||||||||||| || ||| |||||||||| | ||||| ||||
seq2  GGTTATTTTCATGTTTGTAGGCAATAGGAGGAACACCTTTTATTATTACC  70

seq1  TATAACAAATTAAGGAACAAACACTGTATCTTGAGCATGCAAAATTGAAT  497
      ||| |||||||||||||| |||||||||||||||||||||||||||||  
seq2  TAT-ACAAATTAAGGAAC-AACACTGTATCTTGAGCATGCAAAATTGATG  118

seq1  GTTTTATTGTGGAATATGAGAAAATATAGAGACAAAGAAATCAATTCTCT  547
       ||||||||||||| ||| ||||||||||||||||||||||||||| |||
seq2  TTTTTATTGTGGAA-ATGGGAAAATATAGAGACAAAGAAATCAATTTTCT  167

seq1  GGTGGGGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  217

seq1  GTGTGTGTGTGTGCATGTGTGTACGAATGCACCTAGAAATGATGACAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGCATGTGTGTACGAATGCACCTAGAAATGATGACAACA  267

seq1  GCCTGCATTTCAATAAAGCTAATATTTCAAATCAATGAGCAATAAGTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATTTCAATAAAGCTAATATTTCAAATCAATGAGCAATAAGTTAT  317

seq1  TTATATAACTTATTTAATTCTTTAGGTACCTTAGTTTAAATTTTAAAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACTTATTTAATTCTTTAGGTACCTTAGTTTAAATTTTAAAAGC  367

seq1  TGAACTTATTAGAAATAAATGGATGTGAGAAATTTGATGGTATAGTGGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTATTAGAAATAAATGGATGTGAGAAATTTGATGGTATAGTGGTT  417

seq1  AAAAGAAAAAAAATTATGGGTTAGAATGTTGGTCTTCTACCTTTCTAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAATTATGGGTTAGAATGTTGGTCTTCTACCTTTCTAGCC  467

seq1  TTGTGACCCAGAGGAGTGATCTTCAACTCAGAGAATTCCAATATTCCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCCAGAGGAGTGATCTTCAACTCAGAGAATTCCAATATTCCCTT  517

seq1  CCCATGGTTGAGATCACAGGCTCTGGAGCCTCTAGAACTGAATTCCCCGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTTGAGATCACAGGCTCTGGAGCCTCTAGAACTGAATTCCCCGC  567

seq1  AGCTCACAAGGGCCTTGGGAAAGTGTCAGGGGCTGGTGCTTCAGTGTATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAAGGGCCTTGGGAAAGTGTCAGGGGCTGGTGCTTCAGTGTATA  617

seq1  AGATGAAGATGAGTGGATGAGGGGATTAAGGTTATAAAGCAATGTGAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGATGAGTGGATGAGGGGATTAAGGTTATAAAGCAATGTGAAGT  667

seq1  CCCCGGAATGTCGCATTGACAGAAAAACATGTGTTTTTCATGAAACTGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAATGTCGCATTGACAGAAAAACATGTGTTTTTCATGAAACTGCA  717

seq1  GTATAACACGTCCTCTATGCACTTATTTCTCATAACACTGCTTCACTTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACACGTCCTCTATGCACTTATTTCTCATAACACTGCTTCACTTAA  767

seq1  CTATAGAGCCCAAAGAGCATAAAACCCACAGCTCAAACCTGGCACAGCCA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGCCCAAAGAGCATAAAACCCACAGCTCAAACCTGGCACAGCCA  817

seq1  GGCACTCAATACTGTTAGTTATTTAAATCTGAACAATACTACAGATGCCC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCAATACTGTTAGTTATTTAAATCTGAACAATACTACAGATGCCC  867

seq1  ATGTTCATTACTGATATCAATTCCATTTTAAAGATGGAAGCCATTTTCTC  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTACTGATATCAATTCCATTTTAAAGATGGAAGCCATTTTCTC  917

seq1  TATTTCCCTACTTTTTTAATGTAAGTGTCACTTTCTGTATGTGTGGCCAA  1347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTACTTTTTTAATGTAAGTGTCACTTTCTGTATGTGTGGCCAA  967

seq1  GCATGCATTTCTCTTGGGCACACCTACAAGGCTGCTCCTAAGCACGTTCA  1397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTTCTCTTGGGCACACCTACAAGGCTGCTCCTAAGCACGTTCA  1017

seq1  TAAGATGTAAGAAGACAGGAGTCCGTAAATACCTTCGGCAGCAACTACAG  1447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAAGAAGACAGGAGTCCGTAAATACCTTCGGCAGCAACTACAG  1067

seq1  TGGGATTTGAGTGAATTC  1465
      ||||||||||||||||||
seq2  TGGGATTTGAGTGAATTC  1085