BAC Information

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BAC

Clone NameB6Ng01-080F21
Chromosome9 (Build37)
Map Location 5,370,511 - 5,479,910
singlet/doubletdoublet
Overlap geneCasp12
Upstream gene8430410K20Rik, Gria4, EG664889, Casp1, Casp4
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F21.bB6Ng01-080F21.g
ACCDH895527DH895528
length1,1661,106
definitionDH895527|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F21, 5' end.DH895528|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,478,733 - 5,479,910)(5,370,511 - 5,371,610)
sequence
gaattcaaccaagtagaaacaaaaagaactatacaaagaatcaaccagta
aacagcatgactcctgagactcctcatccccaacactgaggacaaaataa
acaaagtccaaacaaaggtttcagttctaacaagcacaaatgtacctttc
tgctcaaactagagcatatcactttttttttaagcacatgtgtattagct
cctccagtgttgttcaatatagaaaactaggcaaccctgaattccaacta
accctctgcaatagcctcaatcagtacaaactgaaacagcatcccgtgag
agctgaaactgtgtcatatttttattttaggctataaaaacaaaattagg
caaacaaacaacagaaaaactcaaaataggttcaaatgatgtatattcat
cttttccaggaaagcagaaggtaggccctatcacaaagaaaagatttaat
taatggaggttaattttcaaaatacattaaatactatcaacttctcaaga
gaacctagggtttgttcaccttgctataaacgagttgacttttgtttata
tcatcgaaaacataaaaatgctttcataatctcagttattaagtttgatc
ttactggaaattcttaaccacaattttcctccctcaaatgatgtcatcat
gccttgtgcatccctctaacaacataagggaaatgatgtcaccgtgccct
gtgcatccctctaacaacataagggaaaacacagctaatgcaggcagact
ttcctgctataataaaatttacattgaggaaaaacatttgttttgaggtg
atagttctttttgtgagattatagtattcaagctcttagagtgtgaacac
attgtagagctgacatcttcctgagagttttaactactggaaatccttaa
ccaattatattttctttattttgagaatgatttggttgctttttcttaga
tggtttctgctattttctgtaatcatagttcatctaaacacaacctattt
tcttgaacattgaagtttgtaacctaaagataggatctcattttcagaag
aatttacagactagcacagcttccctctctgtaggagtagctgtgccaaa
gcaaacagtagctggcgcttgtatatggaagtgcaatgtggagctcggtc
aggttttaatatggca

gaattcctcagagtccagctgtctctttgattatgtgattctgggatcct
gggatcctgagattctgggtatgtcagagctcctgggaggcaagctgctt
ctgagatcctgaaatcctggtgttaccaagctcctgagatcctatgatcc
tggacctattcgagcacctataattctgggcatgttagagcacctgagca
tcatgcttcctctgggtgttgtaggactgagtgtggagctagcacccaag
gaatgctctgggcactggctcagactggaagggctctatataacttttaa
tagtgatattttcatgcctttacatgtgttaacatgaagttaattttctc
agaatatatttctaaaatcagatcagtgtatataaatacaaacatttcta
agtataataaagccccaaattatgtaaataaactatatgcataatactaa
agcaggagaatcaccaatataaaacaaatgattgttcttatacttacata
catgcaacagtagtgaaacattggaaaattcattgtaacactattaatta
atgtcttgcttcctctgacaccagttcccaaatgtcaaatgtttacacta
acaccagcctctacaggttgatgtgtacatagcatgtctctcctctattg
cctagcatttggacaatggtttactatataagccattaccattgtttacc
ttgatttgcttctccgtggtgaatgccatgccacgttataaaggactgag
atttgggtatcatgtgttgtccatattttcctcatttgttctgattttat
atgcctttctgggtaaattttttgttttgttttttgttttgttttgttat
gatttttttttttttttgggttttcgagacaggatttcttttgtattagc
cttggctaactttggaactcactcttgtagaccagactggcctccgaact
cagaatccgcctgcctcttgctttcctgagtttttggattaagaaatgcg
ccccctatgcctggctcctggtaattttatttcaatggttaacaggtttt
ttaaatttggcatgagatttccatgggataatattatgtttaggagtgct
ctacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5478733_5479910
seq2: B6Ng01-080F21.b_46_1211 (reverse)

seq1  TGCCATAATAAACACTGACCCCGGAAGCTCCACACTGCACTTTCCCATTA  50
      ||||||| ||||  ||||||     ||||||||| |||||||  ||| ||
seq2  TGCCATATTAAAACCTGACC----GAGCTCCACATTGCACTT--CCA-TA  43

seq1  TACAAGCGCCAGCTACCTCTTTGCTTTGGCAACAGCTACTTCCTACAGAA  100
      ||||||||||||||| || ||||||||||| |||||||| ||||||||| 
seq2  TACAAGCGCCAGCTA-CTGTTTGCTTTGGC-ACAGCTAC-TCCTACAGA-  89

seq1  GGAAGGGAAGCTGTGCTAGTCTGTAAATTC-TCTGAAAATGAGATCCTAT  149
         ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  --GAGGGAAGCTGTGCTAGTCTGTAAATTCTTCTGAAAATGAGATCCTAT  137

seq1  CTTTAGGTTACAAACTTCAATGTTCAAGAAAATAGGTTGTGTTTAGATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTACAAACTTCAATGTTCAAGAAAATAGGTTGTGTTTAGATGA  187

seq1  ACTATGATTACAGAAAATAGCAGAAACCATCTAAGAAAAAGCAACCAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTACAGAAAATAGCAGAAACCATCTAAGAAAAAGCAACCAAAT  237

seq1  CATTCTCAAAATAAAGAAAATATAATTGGTTAAGGATTTCCAGTAGTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAAAATAAAGAAAATATAATTGGTTAAGGATTTCCAGTAGTTAA  287

seq1  AACTCTCAGGAAGATGTCAGCTCTACAATGTGTTCACACTCTAAGAGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGGAAGATGTCAGCTCTACAATGTGTTCACACTCTAAGAGCTT  337

seq1  GAATACTATAATCTCACAAAAAGAACTATCACCTCAAAACAAATGTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTATAATCTCACAAAAAGAACTATCACCTCAAAACAAATGTTTTT  387

seq1  CCTCAATGTAAATTTTATTATAGCAGGAAAGTCTGCCTGCATTAGCTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGTAAATTTTATTATAGCAGGAAAGTCTGCCTGCATTAGCTGTG  437

seq1  TTTTCCCTTATGTTGTTAGAGGGATGCACAGGGCACGGTGACATCATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTATGTTGTTAGAGGGATGCACAGGGCACGGTGACATCATTTC  487

seq1  CCTTATGTTGTTAGAGGGATGCACAAGGCATGATGACATCATTTGAGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTTGTTAGAGGGATGCACAAGGCATGATGACATCATTTGAGGGA  537

seq1  GGAAAATTGTGGTTAAGAATTTCCAGTAAGATCAAACTTAATAACTGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTGTGGTTAAGAATTTCCAGTAAGATCAAACTTAATAACTGAGA  587

seq1  TTATGAAAGCATTTTTATGTTTTCGATGATATAAACAAAAGTCAACTCGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAGCATTTTTATGTTTTCGATGATATAAACAAAAGTCAACTCGT  637

seq1  TTATAGCAAGGTGAACAAACCCTAGGTTCTCTTGAGAAGTTGATAGTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAAGGTGAACAAACCCTAGGTTCTCTTGAGAAGTTGATAGTATT  687

seq1  TAATGTATTTTGAAAATTAACCTCCATTAATTAAATCTTTTCTTTGTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATTTTGAAAATTAACCTCCATTAATTAAATCTTTTCTTTGTGAT  737

seq1  AGGGCCTACCTTCTGCTTTCCTGGAAAAGATGAATATACATCATTTGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTACCTTCTGCTTTCCTGGAAAAGATGAATATACATCATTTGAAC  787

seq1  CTATTTTGAGTTTTTCTGTTGTTTGTTTGCCTAATTTTGTTTTTATAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGAGTTTTTCTGTTGTTTGTTTGCCTAATTTTGTTTTTATAGCC  837

seq1  TAAAATAAAAATATGACACAGTTTCAGCTCTCACGGGATGCTGTTTCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAATATGACACAGTTTCAGCTCTCACGGGATGCTGTTTCAGT  887

seq1  TTGTACTGATTGAGGCTATTGCAGAGGGTTAGTTGGAATTCAGGGTTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGATTGAGGCTATTGCAGAGGGTTAGTTGGAATTCAGGGTTGCC  937

seq1  TAGTTTTCTATATTGAACAACACTGGAGGAGCTAATACACATGTGCTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTATATTGAACAACACTGGAGGAGCTAATACACATGTGCTTAA  987

seq1  AAAAAAAGTGATATGCTCTAGTTTGAGCAGAAAGGTACATTTGTGCTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGATATGCTCTAGTTTGAGCAGAAAGGTACATTTGTGCTTGT  1037

seq1  TAGAACTGAAACCTTTGTTTGGACTTTGTTTATTTTGTCCTCAGTGTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGAAACCTTTGTTTGGACTTTGTTTATTTTGTCCTCAGTGTTGG  1087

seq1  GGATGAGGAGTCTCAGGAGTCATGCTGTTTACTGGTTGATTCTTTGTATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGAGTCTCAGGAGTCATGCTGTTTACTGGTTGATTCTTTGTATA  1137

seq1  GTTCTTTTTGTTTCTACTTGGTTGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  GTTCTTTTTGTTTCTACTTGGTTGAATTC  1166


seq1: chr9_5370511_5371610
seq2: B6Ng01-080F21.g_69_1174

seq1  GAATTCCTCAGAGTCCAGCTGTCTCTTTGATTATGTGATTCTGGGATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGTCCAGCTGTCTCTTTGATTATGTGATTCTGGGATCCT  50

seq1  GGGATCCTGAGATTCTGGGTATGTCAGAGCTCCTGGGAGGCAAGCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTGAGATTCTGGGTATGTCAGAGCTCCTGGGAGGCAAGCTGCTT  100

seq1  CTGAGATCCTGAAATCCTGGTGTTACCAAGCTCCTGAGATCCTATGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCTGAAATCCTGGTGTTACCAAGCTCCTGAGATCCTATGATCC  150

seq1  TGGACCTATTCGAGCACCTATAATTCTGGGCATGTTAGAGCACCTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTATTCGAGCACCTATAATTCTGGGCATGTTAGAGCACCTGAGCA  200

seq1  TCATGCTTCCTCTGGGTGTTGTAGGACTGAGTGTGGAGCTAGCACCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTCCTCTGGGTGTTGTAGGACTGAGTGTGGAGCTAGCACCCAAG  250

seq1  GAATGCTCTGGGCACTGGCTCAGACTGGAAGGGCTCTATATAACTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCTGGGCACTGGCTCAGACTGGAAGGGCTCTATATAACTTTTAA  300

seq1  TAGTGATATTTTCATGCCTTTACATGTGTTAACATGAAGTTAATTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATTTTCATGCCTTTACATGTGTTAACATGAAGTTAATTTTCTC  350

seq1  AGAATATATTTCTAAAATCAGATCAGTGTATATAAATACAAACATTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATTTCTAAAATCAGATCAGTGTATATAAATACAAACATTTCTA  400

seq1  AGTATAATAAAGCCCCAAATTATGTAAATAAACTATATGCATAATACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATAAAGCCCCAAATTATGTAAATAAACTATATGCATAATACTAA  450

seq1  AGCAGGAGAATCACCAATATAAAACAAATGATTGTTCTTATACTTACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGAATCACCAATATAAAACAAATGATTGTTCTTATACTTACATA  500

seq1  CATGCAACAGTAGTGAAACATTGGAAAATTCATTGTAACACTATTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAACAGTAGTGAAACATTGGAAAATTCATTGTAACACTATTAATTA  550

seq1  ATGTCTTGCTTCCTCTGACACCAGTTCCCAAATGTCAAATGTTTACACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGCTTCCTCTGACACCAGTTCCCAAATGTCAAATGTTTACACTA  600

seq1  ACACCAGCCTCTACAGGTTGATGTGTACATAGCATGTCTCTCCTCTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCCTCTACAGGTTGATGTGTACATAGCATGTCTCTCCTCTATTG  650

seq1  CCTAGCATTTGGACAATGGTTTACTATATAAGCCATTACCATTGTTTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATTTGGACAATGGTTTACTATATAAGCCATTACCATTGTTTACC  700

seq1  TTGATTTGCTTCTCCGTGGTGAATGCCATGCCACGTTATAAAGGACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGCTTCTCCGTGGTGAATGCCATGCCACGTTATAAAGGACTGAG  750

seq1  ATTTGGGTATCATGTGTTGTCCATATTTTCCTCATTTGTTCTGATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTATCATGTGTTGTCCATATTTTCCTCATTTGTTCTGATTTTAT  800

seq1  ATGCCTTTCTGGGTAAATTTTTTGTTTTGTTTTTTGTTTTGTTTTGTTTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCCTTTCTGGGTAAATTTTTTGTTTTGTTTTTTGTTTTGTTTTGTTAT  850

seq1  G--TTTTTTTTTTTTTTGGTTTTTCGAGACAGGATTTC-TTTGTA-TAGC  896
      |  |||||||||||||||| |||||||||||||||||| |||||| ||||
seq2  GATTTTTTTTTTTTTTTGGGTTTTCGAGACAGGATTTCTTTTGTATTAGC  900

seq1  CTTGGCTAAC-TTGGAACTCACTC-TGTAGACCAGACTGGCCT-CGAACT  943
      |||||||||| ||||||||||||| |||||||||||||||||| ||||||
seq2  CTTGGCTAACTTTGGAACTCACTCTTGTAGACCAGACTGGCCTCCGAACT  950

seq1  CAGAAATCCGCCTGCCTC-TGC-TTCCTGAGTGTTGGGATTAAAGACATG  991
      ||| |||||||||||||| ||| ||||||||| || ||||| |||| |||
seq2  CAG-AATCCGCCTGCCTCTTGCTTTCCTGAGTTTTTGGATT-AAGAAATG  998

seq1  CG-CCACTATGCCTGGCTCTGGGTAATTTTTATTTCAATG--TTACAGGT  1038
      || || |||||||||||||  ||||| |||||||||||||  | ||||| 
seq2  CGCCCCCTATGCCTGGCTCCTGGTAA-TTTTATTTCAATGGTTAACAGG-  1046

seq1  TTTTTTAAATTTGGCATGAGATTTCCATGGGATATAATTATGTTTAGGAA  1088
      ||||||||||||||||||||||||||||||||||  ||||||||||||| 
seq2  TTTTTTAAATTTGGCATGAGATTTCCATGGGATAATATTATGTTTAGGA-  1095

seq1  TGTGCTCTACTA  1100
       |||||||||||
seq2  -GTGCTCTACTA  1106


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