BAC Information

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BAC

Clone NameB6Ng01-081E09
Chromosome13 (Build37)9 (Build37)
Map Location 17,555,008 - 17,555,1928,938,803 - 8,939,484
singlet/doubletsingletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E09.bB6Ng01-081E09.g
ACCDH896174DH896175
length242727
definitionDH896174|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E09, 5' end.DH896175|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,555,008 - 17,555,192)(8,938,803 - 8,939,484)
sequence
gaaccccaattcaaatatggaagttgtcgaattttagacaaatactttct
gagcaactaccattagatgatcatgtggtttttgtgtttgagtttgttta
tgtatggaatagtttgatagatttctgtctacttaaccttccctgggatg
aaacctacttgaccatgatggatgatcattttggtgtgtttttttatttg
gtttgagagaattttattgagtatttttgcattgatattcat
atttaagtaaaagggatcccgcgtgaattttcgttctttttcaaggatgt
cttcttgatcactgtctaggtgtgtctgctacatagcatctcacacatgt
gagccagagaactgtgtggagtatctaccagaattgttcattcttcaggt
ccatattgagtagagatacaggggttcaagtttaaatttttcaagtgaca
ttgagtgattgagagaagatgtatatttgtaactcaactcttaaataatt
gtataaatgattacactgacatgtttattttctttgaatttatgtcgtca
catttttgggactggaaattgtaggtgagtcctaacatgaaaatgaggga
ccaagtggtatcaggacactagttgctgctagagtctggtcggaagctga
attcctgaccttgtacagtggccactgtgccctgttaatctgaagtcata
actttaccaaaaacactcttccaaaattccttacaagtactgaggagaga
catctaaaaagtctcccagactagagtgatgtgaattatgacactcatga
agtcagaggactcacagtgatccttaatgacttgctaagcctcatgccct
gtgtctgcatccttttcccccgaagctcagggacctcttcaaggctgtgt
tttagcttttgacatcttgctggtgcttcacttcctgcaacaatattgag
tgctgtctcttgaaaggtgtcacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17555008_17555192
seq2: B6Ng01-081E09.b_65_242 (reverse)

seq1  ATGAATATCAATGCAAAAATCCTC---AAAGTGCTCACTAACCGAATCCA  47
      |||||||||||||||||||| |||   ||| | ||| | |||| |||  |
seq2  ATGAATATCAATGCAAAAATACTCAATAAAATTCTCTCAAACCAAATAAA  50

seq1  AGAACACATCAAAACAATCATCCATCCTGACCAAGTTAGGCTTCATCCCA  97
      | |||||| |||||  |||||||||| ||  |||| |||| |||||||| 
seq2  AAAACACACCAAAATGATCATCCATCATGGTCAAG-TAGGTTTCATCCC-  98

seq1  GGGATGTAGGGATGGTTCAATATACGGAAATAAATCAACATAATCCAGAA  147
             ||||| |||| | || || |||||  |||||  || ||||  |
seq2  -------AGGGAAGGTTAAGTAGACAGAAATCTATCAAACTATTCCA-TA  140

seq1  TATAAACAAACTCAAAGACAAAAACCACATGATCATCT  185
       ||||||||||||||| |||||||||||||||||||||
seq2  CATAAACAAACTCAAACACAAAAACCACATGATCATCT  178

seq1: chr9_8938803_8939484
seq2: B6Ng01-081E09.g_41_727

seq1  TCAA-GATGTCTTC-TGATCACTGTCTAGGTGTGTCTGCTACATAGCATC  48
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAGGATGTCTTCTTGATCACTGTCTAGGTGTGTCTGCTACATAGCATC  50

seq1  TCACACATGTGAGCCAGAGAACTGTGTGGAGTATCTACCAGAATTGTTCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATGTGAGCCAGAGAACTGTGTGGAGTATCTACCAGAATTGTTCA  100

seq1  TTCTTCAGGTCCATATTGAGTAGAGATACAGGGGTTCAAGTTTAAATTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGGTCCATATTGAGTAGAGATACAGGGGTTCAAGTTTAAATTTT  150

seq1  TCAAGTGACATTGAGTGATTGAGAGAAGATGTATATTTGTAACTCAACTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGACATTGAGTGATTGAGAGAAGATGTATATTTGTAACTCAACTC  200

seq1  TTAAATAATTGTATAAATGATTACACTGACATGTTTATTTTCTTTGAATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTGTATAAATGATTACACTGACATGTTTATTTTCTTTGAATT  250

seq1  TATGTCGTCACATTTTTGGGACTGGAAATTGTAGGTGAGTCCTAACATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGTCACATTTTTGGGACTGGAAATTGTAGGTGAGTCCTAACATGA  300

seq1  AAATGAGGGACCAAGTGGTATCAGGACACTAGTTGCTGCTAGAGTCTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGGACCAAGTGGTATCAGGACACTAGTTGCTGCTAGAGTCTGGT  350

seq1  CGGAAGCTGAATTCCTGACCTTGTACAGTGGCCACTGTGCCCTGTTAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCTGAATTCCTGACCTTGTACAGTGGCCACTGTGCCCTGTTAATC  400

seq1  TGAAGTCATAACTTTACCAAAAACACTCTTCCAAAATTCCTTACAAGTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCATAACTTTACCAAAAACACTCTTCCAAAATTCCTTACAAGTAC  450

seq1  TGAGGAGAGACATCTAAAAAGTCTCCCAGACTAGAGTGATGTGAATTATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGACATCTAAAAAGTCTCCCAGACTAGAGTGATGTGAATTATG  500

seq1  ACACTCATGAAGTCAGAGGACTCACAGTGATCCTTAATGAC-TGCTAAGC  547
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACACTCATGAAGTCAGAGGACTCACAGTGATCCTTAATGACTTGCTAAGC  550

seq1  CTCATGCCCTGTGTCTGCATCCTTTT-CCCCGAAGCTCAGGGACCTCTTC  596
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCATGCCCTGTGTCTGCATCCTTTTCCCCCGAAGCTCAGGGACCTCTTC  600

seq1  AAGGCTGTGTTTTAGCTTTTGACATCTTGCTGGTGCTTCACTTCCTGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTGTTTTAGCTTTTGACATCTTGCTGGTGCTTCACTTCCTGCAA  650

seq1  CAATATTGAGTGCTGTCACTTG-AAGGTGTCACACCA  682
      ||||||||||||||||| |||| ||||||||||| ||
seq2  CAATATTGAGTGCTGTCTCTTGAAAGGTGTCACATCA  687