BAC Information

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BAC

Clone NameB6Ng01-081G02
Chromosome9 (Build37)
Map Location 107,149,552 - 107,347,751
singlet/doubletdoublet
Overlap geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2
Upstream geneAlas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3
Downstream geneTmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081G02.bB6Ng01-081G02.g
ACCDH896254DH896255
length695164
definitionDH896254|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G02, 5' end.DH896255|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,149,552 - 107,150,244)(107,347,588 - 107,347,751)
sequence
gaattcacagtgcccttacctcctccagattttgagcatttactccttga
agctggctctcgggaggtaagccacctggactgtcagagccacaggacaa
aaaccttctaaaatcaggctctgaaaggcagatgtaggtgtagtggctga
tctgtggcaacatttcgtggtcccctgacaacactcccaacctcttatag
tcaggttcgtaagcccttgccccgagttaggatctttgccaagtcccctc
tttcttctaaacctacctcaagccctgagatcaagcaaagctgccactct
cttcccaggatctccaatggcccagatgccaggaacacatcctaggatat
cctgtaggagctggccagatcattacccagagaaggggctccattataga
caggctgtggctttcaacatccctacagctgacgctgtatagtcagggag
tcctgatcacaagctaggggaagtaggcacttgactccacctggttgaga
ttttgatgtatgactatgactgagaccttccttattccaagctgagcatc
tccctatcaggcccatataactgggagctcaccaggaggaacctgcccct
ctttctctgacctactagatcagcatactctatctttttttgttttttgt
ttcttcggttttttgggtgtttggggttttttttttgttgttgtt
agctgcagccaatcagaggcaatcaagcacacaagaggcctgatgggcca
tacgggcgggcgtacccacaggcaccagagctggcccctctctctggctg
tggaaccctcccccaaccctcacgtgtttgagaactgagggggggggtca
cggggggggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107149552_107150244
seq2: B6Ng01-081G02.b_47_741

seq1  GAATTCACAGTGCCCTTACCTCCTCCAGA-TGGGAGCATTTACTCCTTGA  49
      ||||||||||||||||||||||||||||| |  |||||||||||||||||
seq2  GAATTCACAGTGCCCTTACCTCCTCCAGATTTTGAGCATTTACTCCTTGA  50

seq1  AGCTGGCTCTCGGGAGGTAAGCCACCTGGACTGTCAGAGCCACAGGACAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTCTCGGGAGGTAAGCCACCTGGACTGTCAGAGCCACAGGACAA  100

seq1  AAACCTTCTAAAATCAGGCTCTGAAAGGCAGATGTAGGTGTAGTGGCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTAAAATCAGGCTCTGAAAGGCAGATGTAGGTGTAGTGGCTGA  150

seq1  TCTGTGGCAACATTTCGTGGTCCCCTGACAACACTCCCAACCTCTTATAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCAACATTTCGTGGTCCCCTGACAACACTCCCAACCTCTTATAG  200

seq1  TCAGGTTCGTAAGCCCTTGCCCCGAGTTAGGATCTTTGCCAAGTCCCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCGTAAGCCCTTGCCCCGAGTTAGGATCTTTGCCAAGTCCCCTC  250

seq1  TTTCTTCTAAACCTACCTCAAGCCCTGAGATCAAGCAAAGCTGCCACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAAACCTACCTCAAGCCCTGAGATCAAGCAAAGCTGCCACTCT  300

seq1  CTTCCCAGGATCTCCAATGGCCCAGATGCCAGGAACACATCCTAGGATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGGATCTCCAATGGCCCAGATGCCAGGAACACATCCTAGGATAT  350

seq1  CCTGTAGGAGCTGGCCAGATCATTACCCAGAGAAGGGGCTCCATTATAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGAGCTGGCCAGATCATTACCCAGAGAAGGGGCTCCATTATAGA  400

seq1  CAGGCTGTGGCTTTCAACATCCCTACAGCTGACGCTGTATAGTCAGGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGGCTTTCAACATCCCTACAGCTGACGCTGTATAGTCAGGGAG  450

seq1  TCCTGATCACAAGCTAGGGGAAGTAGGCACTTGACTCCACCTGGTTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCACAAGCTAGGGGAAGTAGGCACTTGACTCCACCTGGTTGAGA  500

seq1  TTTTGATGTATGACTATGACTGAGACCTTCCTTATTCCAAGCTGAGCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGTATGACTATGACTGAGACCTTCCTTATTCCAAGCTGAGCATC  550

seq1  TCCCTATCAGGCCCATATAACTGGGAGCTCACCAGGAGGAACCTGCCCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCAGGCCCATATAACTGGGAGCTCACCAGGAGGAACCTGCCCCT  600

seq1  CTTTCTCTGACCTACTAGATCAGCATACTCTATCTTTTTTTGTTTTTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGACCTACTAGATCAGCATACTCTATCTTTTTTTGTTTTTTGT  650

seq1  TTCTTCGGTTTTTTGGGTGTTTGGGG-TTTTTTTTTGTTGTTGTT  693
      |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTCGGTTTTTTGGGTGTTTGGGGTTTTTTTTTTGTTGTTGTT  695

seq1: chr9_107347588_107347751
seq2: B6Ng01-081G02.g_76_239 (reverse)

seq1  TCTCCCCCCCCCCGTGACCCCCCCCCTCAGTTCTCAAACACGTGAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCCCCCGTGACCCCCCCCCTCAGTTCTCAAACACGTGAGGGTT  50

seq1  GGGGGAGGGTTCCACAGCCAGAGAGAGGGGCCAGCTCTGGTGCCTGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGTTCCACAGCCAGAGAGAGGGGCCAGCTCTGGTGCCTGTGGG  100

seq1  TACGCCCGCCCGTATGGCCCATCAGGCCTCTTGTGTGCTTGATTGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCCGCCCGTATGGCCCATCAGGCCTCTTGTGTGCTTGATTGCCTCT  150

seq1  GATTGGCTGCAGCT  164
      ||||||||||||||
seq2  GATTGGCTGCAGCT  164