BAC Information

Click to search

BAC

Clone NameB6Ng01-081I13
Chromosome9 (Build37)
Map Location 109,955,342 - 110,073,801
singlet/doubletdoublet
Overlap geneMtap4, Dhx30, Smarcc1
Upstream geneScotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneRn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081I13.bB6Ng01-081I13.g
ACCDH896360DH896361
length295984
definitionDH896360|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I13, 5' end.DH896361|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,073,507 - 110,073,801)(109,955,342 - 109,956,333)
sequence
gaattcttttctttcttttctttcttttttttttttttttttttaagatt
ttatttgtcttacacatatcgtatgtataagtgcactgttgctgtctttg
gacacaccagaagagggcatcggatcccactacagatggttgtgagccac
catgtggttgctaggaaaatcctaggaaagctgttccaagtttctctcct
tgacttcagatcaagctacaaacatcttaccctttcttcccgctcttctt
gcgggactctgtggctgtgggaggaggaggagaaggggaaggttt
gaattcactcaggaaaatttgaatgcaggccaggataaagagttggagaa
attaaggtcttctgaggaggggcctatgcttgaccaagtaccccagcaga
aaaaggcaatccgaagagccctgtctgagtgttaccatctctcagtgccc
ccagctgtgaatcttgtcgataagtaccctgagctgcctgcccgagagga
gcttccttctgacctgctgcctcccaccagtagcccaatgccaagcccta
tgcccaggaagctgggggtgcctgccatgaggcgctccatgactgtggct
gaggaccagtcagctagctgcagattgagtgctggggaactggccagcct
gtctgcttctcaggtaccaactgctttaaccttcgaggaaccagtggcca
aggagagagaagaacagatccacttcagcaatgatagcaacagctctggg
aagaaggaactgggcatcgctgggctgtatctccacagtaagctggaaca
gattcccgaaggaagccacaagggaaaggggcaggaaaatactggtgaga
caagagttgattcatgtcccttcatctgcctgggaggcgagaaacagctg
atggcactggcagggaagaaagaaattgaggtcactgcaacccagagcat
tccatcattgctgttggaagagaccccacgtgatggtatgtttctaaatt
ttgcctccactgggaaccggcaggcagtgaggaagaagccaaagtgatag
atggacaggagcgtcagcagcttgttacttctggagtctgggactacctg
ggggaaggtttatttcccttgttggatgcttttctgggagtgaggcagga
gaacacagtgaatctggctgggttcagctgaatgcttcactgtgatactg
gcttgctgggtgcaacgggtggggcaaatttgtaagctttaaaacaaagc
tgcttaacctcatgcaacctcctttcccatcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110073507_110073801
seq2: B6Ng01-081I13.b_43_337 (reverse)

seq1  AAACCTTCCCCTTCTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCCCCTTCTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGAA  50

seq1  GAGCGGGAAGAAAGGGTAAGATGTTTGTAGCTTGATCTGAAGTCAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGAAGAAAGGGTAAGATGTTTGTAGCTTGATCTGAAGTCAAGGAG  100

seq1  AGAAACTTGGAACAGCTTTCCTAGGATTTTCCTAGCAACCACATGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGGAACAGCTTTCCTAGGATTTTCCTAGCAACCACATGGTGGC  150

seq1  TCACAACCATCTGTAGTGGGATCCGATGCCCTCTTCTGGTGTGTCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAGTGGGATCCGATGCCCTCTTCTGGTGTGTCCAAAG  200

seq1  ACAGCAACAGTGCACTTATACATACGATATGTGTAAGACAAATAAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACAGTGCACTTATACATACGATATGTGTAAGACAAATAAAATCT  250

seq1  TAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAGAAAAGAATTC  295
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAGAAAAGAATTC  295

seq1: chr9_109955342_109956333
seq2: B6Ng01-081I13.g_68_1051

seq1  GAATTCACTCAGGAAAATTTGAATGCAGGCCAGGATAAAGAGTTGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGGAAAATTTGAATGCAGGCCAGGATAAAGAGTTGGAGAA  50

seq1  ATTAAGGTCTTCTGAGGAGGGGCCTATGCTTGACCAAGTACCCCAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTCTTCTGAGGAGGGGCCTATGCTTGACCAAGTACCCCAGCAGA  100

seq1  AAAAGGCAATCCGAAGAGCCCTGTCTGAGTGTTACCATCTCTCAGTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAATCCGAAGAGCCCTGTCTGAGTGTTACCATCTCTCAGTGCCC  150

seq1  CCAGCTGTGAATCTTGTCGATAAGTACCCTGAGCTGCCTGCCCGAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGAATCTTGTCGATAAGTACCCTGAGCTGCCTGCCCGAGAGGA  200

seq1  GCTTCCTTCTGACCTGCTGCCTCCCACCAGTAGCCCAATGCCAAGCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTCTGACCTGCTGCCTCCCACCAGTAGCCCAATGCCAAGCCCTA  250

seq1  TGCCCAGGAAGCTGGGGGTGCCTGCCATGAGGCGCTCCATGACTGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGAAGCTGGGGGTGCCTGCCATGAGGCGCTCCATGACTGTGGCT  300

seq1  GAGGACCAGTCAGCTAGCTGCAGATTGAGTGCTGGGGAACTGGCCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAGTCAGCTAGCTGCAGATTGAGTGCTGGGGAACTGGCCAGCCT  350

seq1  GTCTGCTTCTCAGGTACCAACTGCTTTAACCTTCGAGGAACCAGTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTCTCAGGTACCAACTGCTTTAACCTTCGAGGAACCAGTGGCCA  400

seq1  AGGAGAGAGAAGAACAGATCCACTTCAGCAATGATAGCAACAGCTCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGAAGAACAGATCCACTTCAGCAATGATAGCAACAGCTCTGGG  450

seq1  AAGAAGGAACTGGGCATCGCTGGGCTGTATCTCCACAGTAAGCTGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAACTGGGCATCGCTGGGCTGTATCTCCACAGTAAGCTGGAACA  500

seq1  GATTCCCGAAGGAAGCCACAAGGGAAAGGGGCAGGAAAATACTGGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCGAAGGAAGCCACAAGGGAAAGGGGCAGGAAAATACTGGTGAGA  550

seq1  CAAGAGTTGATTCATGTCCCTTCATCTGCCTGGGAGGCGAGAAACAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTGATTCATGTCCCTTCATCTGCCTGGGAGGCGAGAAACAGCTG  600

seq1  ATGGCACTGGCAGGGAAGAAAGAAATTGAGGTCACTGCAACCCAGAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGGCAGGGAAGAAAGAAATTGAGGTCACTGCAACCCAGAGCAT  650

seq1  TCCATCATTGCTGTTGGAAGAGACCCCACGTGATGGTATGTTTCTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATTGCTGTTGGAAGAGACCCCACGTGATGGTATGTTTCTAAATT  700

seq1  TTGCCTCCACTGGGAACCGGCAGGCAGTGAGGAAGAAGCCAAAGTGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCACTGGGAACCGGCAGGCAGTGAGGAAGAAGCCAAAGTGATAG  750

seq1  ATGGACAGGAGCGTCAGCAGCTTGTTACTCCTGGAGTCTGGGACTACCTG  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGACAGGAGCGTCAGCAGCTTGTTACTTCTGGAGTCTGGGACTACCTG  800

seq1  GGGGAAGGCTTAATTCCCTTGTTGGAGGC-TTTCTGGGAGTGAGGCAGGA  849
      |||||||| ||| ||||||||||||| || ||||||||||||||||||||
seq2  GGGGAAGGTTTATTTCCCTTGTTGGATGCTTTTCTGGGAGTGAGGCAGGA  850

seq1  GAACACAGTGAATCTGGCTGGGTCAGGCTGAATGCTTCACTGTGGATACT  899
      |||||||||||||||||||||||   ||||||||||||||||| ||||||
seq2  GAACACAGTGAATCTGGCTGGGTTCAGCTGAATGCTTCACTGT-GATACT  899

seq1  GGCTGGCTGGGTTGTCAACGGGTGGGGGCAAAATTGGTAGGCATTAAAAA  949
      |||| |||||||   ||||||||||||   ||||| ||| || |||||| 
seq2  GGCTTGCTGGGT--GCAACGGGTGGGG--CAAATTTGTAAGCTTTAAAA-  944

seq1  CTAGAGCTGCTTAACCTCATGCCAACCTCCCTATCCCATCCCC  992
        | ||||||||||||||||| |||||| ||| ||||||||||
seq2  -CAAAGCTGCTTAACCTCATG-CAACCT-CCTTTCCCATCCCC  984