BAC Information

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BAC

Clone NameB6Ng01-082C20
Chromosome9 (Build37)
Map Location 37,341,963 - 37,463,252
singlet/doubletdoublet
Overlap geneEsam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1
Upstream geneEG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479
Downstream genePanx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C20.bB6Ng01-082C20.g
ACCDH896814DH896815
length1,139560
definitionDH896814|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C20, 5' end.DH896815|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,462,083 - 37,463,252)(37,341,963 - 37,342,528)
sequence
gaattctgtagtggagaacaaaaaagaattttgtagggggtctaaattaa
gtccaagtcctatatcctttctctgccaaaggccacactaattggagtgg
ccacacccattgatttgcccaaagagtgcaagccctggtgtaccatcttg
ttctggcatgagcattaagaatgtccctcttcatccaaaggtgtccatgc
aattaccctccctgtaatagaacccaaacacttggccctgcagatttttt
tttaaaagaagtttctttctttttattcttattactgtgtgtgtgccgcc
gagcacgcatagaagttatcaggtaactgtcattcattcctctccttcca
ctgtgggttctggggctccgattcggtgcctttccccgctgagccagctg
tacagactctgtatttattaacagcatgcgcagagtagaaccacacttct
cttacacactgcagcacagagggctctttcaatctgagatatagatcttg
tcaccagaaaggagcctcaagttttaagttcattttatgtgattatagtc
ctttttttttttttcttccttaaaggaaaatgcttccatctgtgatgaaa
ttgctcgtcttgaggaaaaatttcttaaagcaaaggaagaaagaaggtga
gccagcttcattttgctgttgctgtgattatcattgtcatcattattact
ggtgctgtggattgatattattatggtggctgattttttttttccctctc
ctctggattcctgcacatcgcaaagccccttgaccacttgaggcaataca
gaggaattctaaacctgtgtgctatatcccacccaaataacttcccatta
tgaaaaccaagggatgatttaaaaaaaaaaaaaaaaccactgttctcatt
ctactaatattgggctttgtttttccctatgcaaattacagtgggtatat
ggatacctctgattctattcgtatgatttctccagacacctcagccttcc
accctaaaggtagagatccctgcaggacagagagtccagccaatatctgg
attctcagtattgatatcctgcaggctcattgccttgtctcatagagcct
atggtgaatccttgattagccgtatccactgcttagcga
tttcccacctcagcacagggaggtgaagcaggtctccctctcaagtggct
gagcataagacctggggatgaaaggtggaatgacttaagagatggaggga
tcaaaacccgtgggcccttggagtgtggattttaacctgtcttcccctct
ctagttcctccagctcctccatcctgtagtttacagggtgtaccctatgt
cgggaccaatgtgaccctgaactgcaagtccccaaggagtaaacctactg
ctcagtaccagtgggagaggctggccccatcctcccaggtcttctttgga
ccagccttaggtaagagggttcctggaggtctctgagatggtggctgaag
atgagggaagatgagaggtacctcacagactggagtgatgaagacaggct
ttacagaaagggacatggaaagacgatatattagcaggtgctatgctcag
agcttctaagaactggggatacttttattgaggtctggaactaaacagcc
tgatttgagttccagtccatataagaaatatttgggggtagtgtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37462083_37463252
seq2: B6Ng01-082C20.b_48_1186 (reverse)

seq1  TCGCTTAAGCAGTGGGAATTACAGACTAAATACAAAGATTATCACACAAT  50
      |||| ||||||||||    ||| | ||||   ||| ||||    ||| ||
seq2  TCGC-TAAGCAGTGG---ATAC-GGCTAA--TCAAGGATT----CACCAT  39

seq1  AAGGCTCTTATTGGAGACAGAGGCCATGAAGCCCTGCAGGATAATCAATA  100
       |||||| |||  |||||| |||| ||||   |||||||||| |||||||
seq2  -AGGCTC-TAT--GAGACA-AGGCAATGA--GCCTGCAGGAT-ATCAATA  81

seq1  CTTGAAGAAATCAAGATATTGGCTGGAACTTCTCT-TGTCCCTGCAGGGA  149
      | |||   |||| ||||||||||||||    |||| ||| ||||||||||
seq2  C-TGA--GAATCCAGATATTGGCTGGA----CTCTCTGT-CCTGCAGGGA  123

seq1  TCTTCTACCTTTAGGGTGGAAGGCCTGAGGTGTCTGGAGAATATTCATAC  199
      || |||||||||||||||||||| ||||||||||||||||  | ||||||
seq2  TC-TCTACCTTTAGGGTGGAAGG-CTGAGGTGTCTGGAGA--AATCATAC  169

seq1  GAATAGAATCAGAGGTATCCATATACCCACTGTAATTTGCATAGGGAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATCAGAGGTATCCATATACCCACTGTAATTTGCATAGGGAAAA  219

seq1  ACAAAG-CCAATATTAGTAGAATGAGAAACAGTGGTTTTTTTTTTTTTTT  298
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAAAGCCCAATATTAGTAGAATGAG-AACAGTGGTTTTTTTTTTTTTTT  268

seq1  TAAATCATCCCTTGGTTTTCATAATTGGGAAGTTATTTGGGTGGGATATA  348
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAATCATCCCTTGGTTTTCATAA-TGGGAAGTTATTTGGGTGGGATATA  317

seq1  GCACACAGGTTTAGAATTCCTCTGTATTGCCTCAAGTGGTCAAGGGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGTTTAGAATTCCTCTGTATTGCCTCAAGTGGTCAAGGGGCTT  367

seq1  TGCGATGTGCAGGAATCCAGAGGAGAGGGAAAAAAAAAATCAGCCACCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGTGCAGGAATCCAGAGGAGAGGGAAAAAAAAAATCAGCCACCAT  417

seq1  AATAATATCAATCCACAGCACCAGTAATAATGATGACAATGATAATCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATCAATCCACAGCACCAGTAATAATGATGACAATGATAATCACA  467

seq1  GCAACAGCAAAATGAAGCTGGCTCACCTTCTTTCTTCCTTTGCTTTAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCAAAATGAAGCTGGCTCACCTTCTTTCTTCCTTTGCTTTAAGA  517

seq1  AATTTTTCCTCAAGACGAGCAATTTCATCACAGATGGAAGCATTTTCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCTCAAGACGAGCAATTTCATCACAGATGGAAGCATTTTCCTT  567

seq1  TAAGGAAGAAAAAAAAAAAAAGGACTATAATCACATAAAATGAACTTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAAAAAAAAAAAAAGGACTATAATCACATAAAATGAACTTAAA  617

seq1  ACTTGAGGCTCCTTTCTGGTGACAAGATCTATATCTCAGATTGAAAGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGCTCCTTTCTGGTGACAAGATCTATATCTCAGATTGAAAGAGC  667

seq1  CCTCTGTGCTGCAGTGTGTAAGAGAAGTGTGGTTCTACTCTGCGCATGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGCTGCAGTGTGTAAGAGAAGTGTGGTTCTACTCTGCGCATGCT  717

seq1  GTTAATAAATACAGAGTCTGTACAGCTGGCTCAGCGGGGAAAGGCACCGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAATACAGAGTCTGTACAGCTGGCTCAGCGGGGAAAGGCACCGA  767

seq1  ATCGGAGCCCCAGAACCCACAGTGGAAGGAGAGGAATGAATGACAGTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAGCCCCAGAACCCACAGTGGAAGGAGAGGAATGAATGACAGTTAC  817

seq1  CTGATAACTTCTATGCGTGCTCGGCGGCACACACACAGTAATAAGAATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACTTCTATGCGTGCTCGGCGGCACACACACAGTAATAAGAATAA  867

seq1  AAAGAAAGAAACTTCTTTTAAAAAAAAATCTGCAGGGCCAAGTGTTTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAACTTCTTTTAAAAAAAAATCTGCAGGGCCAAGTGTTTGGG  917

seq1  TTCTATTACAGGGAGGGTAATTGCATGGACACCTTTGGATGAAGAGGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACAGGGAGGGTAATTGCATGGACACCTTTGGATGAAGAGGGAC  967

seq1  ATTCTTAATGCTCATGCCAGAACAAGATGGTACACCAGGGCTTGCACTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATGCTCATGCCAGAACAAGATGGTACACCAGGGCTTGCACTCT  1017

seq1  TTGGGCAAATCAATGGGTGTGGCCACTCCAATTAGTGTGGCCTTTGGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAAATCAATGGGTGTGGCCACTCCAATTAGTGTGGCCTTTGGCAG  1067

seq1  AGAAAGGATATAGGACTTGGACTTAATTTAGACCCCCTACAAAATTCTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATATAGGACTTGGACTTAATTTAGACCCCCTACAAAATTCTTT  1117

seq1  TTTGTTCTCCACTACAGAATTC  1170
      ||||||||||||||||||||||
seq2  TTTGTTCTCCACTACAGAATTC  1139

seq1: chr9_37341963_37342528
seq2: B6Ng01-082C20.g_66_631

seq1  GAATTCTTTCCCACCTCAGCACAGGGAGGTGAAGCAGGTCTCCCTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCACCTCAGCACAGGGAGGTGAAGCAGGTCTCCCTCTCAA  50

seq1  GTGGCTGAGCATAAGACCTGGGGATGAAAGGTGGAATGACTTAAGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAGCATAAGACCTGGGGATGAAAGGTGGAATGACTTAAGAGATG  100

seq1  GAGGGATCAAAACCCGTGGGCCCTTGGAGTGTGGATTTTAACCTGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCAAAACCCGTGGGCCCTTGGAGTGTGGATTTTAACCTGTCTTC  150

seq1  CCCTCTCTAGTTCCTCCAGCTCCTCCATCCTGTAGTTTACAGGGTGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTAGTTCCTCCAGCTCCTCCATCCTGTAGTTTACAGGGTGTACC  200

seq1  CTATGTCGGGACCAATGTGACCCTGAACTGCAAGTCCCCAAGGAGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCGGGACCAATGTGACCCTGAACTGCAAGTCCCCAAGGAGTAAAC  250

seq1  CTACTGCTCAGTACCAGTGGGAGAGGCTGGCCCCATCCTCCCAGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTCAGTACCAGTGGGAGAGGCTGGCCCCATCCTCCCAGGTCTTC  300

seq1  TTTGGACCAGCCTTAGGTAAGAGGGTTCCTGGAGGTCTCTGAGATGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCAGCCTTAGGTAAGAGGGTTCCTGGAGGTCTCTGAGATGGTGG  350

seq1  CTGAAGATGAGGGAAGATGAGAGGTACCTCACAGACTGGAGTGATGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATGAGGGAAGATGAGAGGTACCTCACAGACTGGAGTGATGAAGA  400

seq1  CAGGCTTTACAGAAAGGGACATGGAAAGACGATATATTAGCAGGTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTACAGAAAGGGACATGGAAAGACGATATATTAGCAGGTGCTAT  450

seq1  GCTCAGAGCTTCTAAGAACTGGGGATACTTTTATTGAGGTCTGGAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCTTCTAAGAACTGGGGATACTTTTATTGAGGTCTGGAACTAA  500

seq1  ACAGCCTGATTTGAGTTCCAGTCCATATAAGAAATATTTGGGGGTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGATTTGAGTTCCAGTCCATATAAGAAATATTTGGGGGTAGTGT  550

seq1  GTGTGTGTGTGTGTGT  566
      ||||||||||||||||
seq2  GTGTGTGTGTGTGTGT  566