BAC Information

Click to search

BAC

Clone NameB6Ng01-082P19
Chromosome9 (Build37)5 (Build37)
Map Location 96,718,221 - 96,718,62476,313,613 - 76,314,815
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneAcpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082P19.bB6Ng01-082P19.g
ACCDH897378DH897379
length9581,155
definitionDH897378|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P19, 5' end.DH897379|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,718,221 - 96,718,624)(76,313,613 - 76,314,815)
sequence
gaattcaggaaattcccctgattttttttttttttttgcttttgcatact
atttgagtttggtgtatcattctctggttgattcttggaccctaagtata
tatatatgttcatttattctgttcttctagagaaccatgaccaatacaac
cctttaaaggaatccagttgtaaggataagctatctatcattatccccag
gggaggcatttttctgactttgggtaaagtgtttattgatagttaaagct
cactcacttgctctcttagctctgtaggggctgagacaactttccaatcg
tatacacttcttgcatctcagaattggttaaactgctggtggctcgcaca
tccttcttgttgatctcctgctgtatgtaagatcctgcattcagcactgt
gacagacacatttttaaaaaattttttaaaaaaattttttaattaatatt
tttattacatattttcctcaattacatttccaatgctatcccaaaagtcc
cctataccccccccccacttccctacccactcattcccattttttttggc
cctggcgttcccctgtactgaggcatatacagtttgtgtgtccaatgggc
ctctctttccagtgatggccgactaggccatcttttgatacatatgcagc
tagagtcagagctccggggtactggttagttcatattgttgttccacata
tagggttgcagttccctttagctccttgggtactttctctagctcctcca
ttgggggccgtgtgacccatccaatagctgactgtgagcatccacttctg
tgtttgctaggccccggcatagtctcacaagagacagctacatctgggtc
ctttcagtaaaatcttgctagtgtatgcaatggtgtcagcgtttggaggc
tgattatggggtggatccctggatatggcagtctctacatggtccatcct
ttcatctc
gaattcaagcattgttgtctgcaaagccctaggaagggttagggctccag
agagacatcccaaactgtaagttctctgaaggtagagtgctgcccatggg
tctgtgttggtcactcatttatctgagtgtgtcattccatgtctagtgca
aatcaaagcacttttaagtatttggggagcaaataaagaaatgcatgaca
aatccttctattgaaaaatctaaaatagttttcagttacatgatccatca
actttctttctaatggaccaatagaaacacttcctagctaagccttgact
aaataatcttcatgatttctctcaatggttagtgcttcttcctaataaca
aacaaaaaataatatttgctactgctactaccctttactgaggaagtcct
ataaatcaagggccaaacgctgggattcccttaccttgtcaccaattcct
acaatgttcccaaacaggtcaggatgagatgggaaaaccaatgtttagcg
gagatgttttaccaaaggatgttctgctatagcctgcttgactctagaac
ctgtgtgttgcaaacatctagcagagtgaaaggtatattactcagtggac
tgtgacacctaataagcttaggaatgctgttctcaggttggggacctttt
ccccatgtgcatatatggagcgcttactcttggcagccacctcctccagc
cccgggtgtgcaagcgtgtgcagcaactgcccaatttaccaggaggaagg
aaacacatcctctatggcctttggcctctcccttcccaccctctagtcac
acaagctcctcccaacctgaaggctctttattcttctagaagaagtagtg
gccgcaggattcttatttttattctagtcggccagttttgccgctgttgt
ttttcggtttgtttgtttgtttagatgcctctacatgaggagtttgtttc
tcatgccctcctcgtgggctctcagacagttctctcccaggaaattgttc
taacatcgacataaatgccctgcctgatcatgaccattctaacaactcca
gatacagcagcatgagatgcagaccacatctgggagaggattttccatga
tcaggcgatttaactgtctgcgtgcaacttctatgcagtctatagaaaat
cttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96718221_96718624
seq2: B6Ng01-082P19.b_494_895 (reverse)

seq1  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50

seq1  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100
      |||||||||||||||||||||||||| ||||||| ||||| ||| |||||
seq2  CAGAAGTGGATGCTCACAGTCAGCTATTGGATGGGTCACACGGCCCCCAA  100

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTA  150
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTA  150

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCT  200
      || ||||||||||| |||||||||||||||||||| |||||| |||||||
seq2  TATGTGGAACAACAATATGAACTAACCAGTACCCCGGAGCTC-TGACTCT  199

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  249

seq1  GGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAG  300
      |||||||||||||| || ||| | | |||| | |||||||||||||||||
seq2  GGCCCATTGGACACACAAACTGTATATGCCTCAGTACAGGGGAACGCCAG  299

seq1  GGCC---AAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGT  347
      ||||   |||   ||||| || |||||||||| ||||||   ||| ||||
seq2  GGCCAAAAAAAATGGGAA-TGAGTGGGTAGGGAAGTGGG---GGGGGGGT  345

seq1  AAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTA  397
      |  |||||||||||| |||||||||||||||||| ||||  |||||  ||
seq2  ATAGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATATGTA  395

seq1  ATAAAAA  404
      |||||||
seq2  ATAAAAA  402

seq1: chr5_76313613_76314815
seq2: B6Ng01-082P19.g_69_1223

seq1  GAATTCAAGCATTGTTGTCTGCAAAGCCCTAGGAAGGGTTAGGGCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCATTGTTGTCTGCAAAGCCCTAGGAAGGGTTAGGGCTCCAG  50

seq1  AGAGACATCCCAAACTGTAAGTTCTCTGAAGGTAGAGTGCTGCCCATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATCCCAAACTGTAAGTTCTCTGAAGGTAGAGTGCTGCCCATGGG  100

seq1  TCTGTGTTGGTCACTCATTTATCTGAGTGTGTCATTCCATGTCTAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGGTCACTCATTTATCTGAGTGTGTCATTCCATGTCTAGTGCA  150

seq1  AATCAAAGCACTTTTAAGTATTTGGGGAGCAAATAAAGAAATGCATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCACTTTTAAGTATTTGGGGAGCAAATAAAGAAATGCATGACA  200

seq1  AATCCTTCTATTGAAAAATCTAAAATAGTTTTCAGTTACATGATCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCTATTGAAAAATCTAAAATAGTTTTCAGTTACATGATCCATCA  250

seq1  ACTTTCTTTCTAATGGACCAATAGAAACACTTCCTAGCTAAGCCTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTCTAATGGACCAATAGAAACACTTCCTAGCTAAGCCTTGACT  300

seq1  AAATAATCTTCATGATTTCTCTCAATGGTTAGTGCTTCTTCCTAATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTTCATGATTTCTCTCAATGGTTAGTGCTTCTTCCTAATAACA  350

seq1  AACAAAAAATAATATTTGCTACTGCTACTACCCTTTACTGAGGAAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAATAATATTTGCTACTGCTACTACCCTTTACTGAGGAAGTCCT  400

seq1  ATAAATCAAGGGCCAAACGCTGGGATTCCCTTACCTTGTCACCAATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAGGGCCAAACGCTGGGATTCCCTTACCTTGTCACCAATTCCT  450

seq1  ACAATGTTCCCAAACAGGTCAGGATGAGATGGGAAAACCAATGTTTAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCCCAAACAGGTCAGGATGAGATGGGAAAACCAATGTTTAGCG  500

seq1  GAGATGTTTTACCAAAGGATGTTCTGCTATAGCCTGCTTGACTCTAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTTACCAAAGGATGTTCTGCTATAGCCTGCTTGACTCTAGAAC  550

seq1  CTGTGTGTTGCAAACATCTAGCAGAGTGAAAGGTATATTACTCAGTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTGCAAACATCTAGCAGAGTGAAAGGTATATTACTCAGTGGAC  600

seq1  TGTGACACCTAATAAGCTTAGGAATGCTGTTCTCAGGTTGGGGACCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACCTAATAAGCTTAGGAATGCTGTTCTCAGGTTGGGGACCTTTT  650

seq1  CCCCATGTGCATATATGGAGCGCTTACTCTTGGCAGCCACCTCCTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTGCATATATGGAGCGCTTACTCTTGGCAGCCACCTCCTCCAGC  700

seq1  CCCGGGTGTGCAAGCGTGTGCAGCAACTGCCCAATTTACCAGGAGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTGTGCAAGCGTGTGCAGCAACTGCCCAATTTACCAGGAGGAAGG  750

seq1  AAACACATCCTCTATGGCCTTTGGCCTCTCCCTTCCCACCCTCTAGTCAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACACATCCTCTATGGCCTTTGGCCTCTCCCTTCCCACCCTCTAGTC-A  799

seq1  CACAAGCTCCTCCCAACCTGAAGGCTCTTTATTCTTCTAGAAGAAGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTCCTCCCAACCTGAAGGCTCTTTATTCTTCTAGAAGAAGTAGT  849

seq1  GGCCGCAGGATTCTTATTTTTATTCTAGTCGGCCAGTTTTGCCGCTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCCGCAGGATTCTTATTTTTATTCTAGTCGGCCAGTTTTGCCGCTG-TT  898

seq1  GTTTTTCGGTTTTGTTTTGTTTTGTTTAGATGCCTCTACAATGAGGAGTT  950
      ||||||||| |||||||   ||||||||||||||||||| ||||||||||
seq2  GTTTTTCGG-TTTGTTT--GTTTGTTTAGATGCCTCTAC-ATGAGGAGTT  944

seq1  TGTTTCTCCATGCCCTTCCTCAGTGGGCTCTTCAGACAGTTCCTCTCCCC  1000
      ||||||| ||||||| ||||| |||||||| |||||||||| ||||||| 
seq2  TGTTTCT-CATGCCC-TCCTC-GTGGGCTC-TCAGACAGTT-CTCTCCC-  988

seq1  AAGGAAATTGTTTCTAAACATCGGACATAAATGCCCCTGCCCTGATCATG  1050
       ||||||||| |||| |||||| |||||||||| ||||| ||||||||||
seq2  -AGGAAATTG-TTCT-AACATC-GACATAAATG-CCCTG-CCTGATCATG  1032

seq1  ACCATTCCTAAACAACATCCCAAGAATAACAGCAGCATGAGGATGCAAGA  1100
      |||||||   |||||| |||  |||   |||||||||||| ||||||   
seq2  ACCATTC--TAACAAC-TCC--AGA--TACAGCAGCATGA-GATGCA--G  1072

seq1  ACCACCATCCTGGGAGGAGGATTTTCATATGGATCAGGGGCGATTTAAAA  1150
      |||| ||| |||||| ||||||||||  || |||||  ||||||||||  
seq2  ACCA-CAT-CTGGGA-GAGGATTTTC-CAT-GATCA--GGCGATTTAA--  1113

seq1  CCTGTCTGCAGTGCAGACATCTTTCTCTACTCAGTCTCATAGAAAATACT  1200
       |||||||| ||||| ||       ||||  |||||| ||||||||| ||
seq2  -CTGTCTGC-GTGCA-AC------TTCTATGCAGTCT-ATAGAAAAT-CT  1152

seq1  TCC  1203
      |||
seq2  TCC  1155