BAC Information

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BAC

Clone NameB6Ng01-083G16
Chromosome9 (Build37)
Map Location 38,932,231 - 39,106,560
singlet/doubletdoublet
Overlap geneOlfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1
Upstream geneOlfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1
Downstream geneOlfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083G16.bB6Ng01-083G16.g
ACCDH897684DH897685
length967960
definitionDH897684|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G16, 5' end.DH897685|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,106,036 - 39,106,560)(38,932,231 - 38,932,946)
sequence
gaattccacaatttcagcaataggtttaaatgtgatatagaagggattat
atatttaccagataacaaagaaaaactgcatggtgattctctttcaaata
gaataaagaacattctaaaatgtagataacaaataactatatatactcta
ggtactgtaagcatccaattatgtacatcacagaaggagggggctgtatg
catgaagaatttaacaggatcaaatgagcagactgttaaattgttgatgc
atatctgagggtttcttccctgacttgaaacattatattttattagaatt
aattctggatatttgttggaaatttgatattttatggcatttctatttca
ttttttaaaagataccattgaaatatttttaaatgtaaggacacacaaca
tgatataaattagtgtcagtgtttggtgcctgcccatgggattgaaacta
aactgtgccagtcacaggacagcctgtcctttagtctatgctccattttt
gtgcctgcatttcctttagacaggaacaatactaggtcaaaaattttgaa
gatgattgaatggccccatgcctcatatggtgatcgtgtctttctactag
aggtcataacttcagattccatctcataatacttgggaatttcagctaag
cccatttctattgagacctgggaacttctaacatctcaggtctctaggat
tttctagtgattctcaccgacccattcccaactgttgcatattttcattt
tctcttaactctctgggcttctcttctgtctcccctgtacctgagcctgc
cccacttttcctgtctcccatacaagtccctccttctgtttcctatgatt
atttttgttccccttataactgggattgaagtatgtacagttgggccttc
tttcttgttaagcttcagatgattcatgagttgtatcattggtcggtaat
tttggctatatccactc
gaattcacctagggatgacagctcattgggacacaggatttctatataga
tatttggctgaagccaagaacagctgtgtcaggcgagaggagcagggctt
ataaaagagatgttaaaacattcttatgtcaagtagatttatgctgtgaa
tggttcccagaagtaagaatggtaaatatacaaatgacatgagaaaaaga
cagacagacagacagagagagagagaataggtttcagaaaagcagttgtc
ccctgtctggaacatgttagagaaagagaaggaaaatgaatataaggtat
gtcagagctttcctaggcacaggagaaaattgggagatgcccagcttaat
ctctggatcctactggagacaattttatttctggttacatcaagttcttt
tcctgctctgtctattttctgtccttggttgacacatctgtccacatgtc
tgtttttgttttgtttttttgaatgattgtttttctgtgtttcatgttga
gaagaaaaaaaaattggataaaactttatctgctggctatccaccacttg
atttgatttaagttgtttaaaaggcagtctcaatttgcacagcaaaaact
gataagttaccctgcactgtagctgggagtcaagcacagctgtagaagcc
ctgctaggggctgattagaaaaatctctgcaattgtgtttattgtgttca
gcaagtgacaaggtactttttctcttgaaatttaagctagaaaggatagg
aacattttgtttggtctaaatatataagatgtgtgtagacacttcatttt
tgtttctgactggctttaaaagtataaatatgttctgcatttcttggata
tagagtgctggcttataagttattggggatgattagaaatttgtaatatt
ggtaaagatgttagcttaaaatggtaactcatgggatggagtcattctga
atcacccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39106036_39106560
seq2: B6Ng01-083G16.b_43_567 (reverse)

seq1  TCCTGTCTAAAGGAAATGCAGGCACAAAAATGGAGCATAGACTAAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTAAAGGAAATGCAGGCACAAAAATGGAGCATAGACTAAAGGAC  50

seq1  AGGCTGTCCTGTGACTGGCACAGTTTAGTTTCAATCCCATGGGCAGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCCTGTGACTGGCACAGTTTAGTTTCAATCCCATGGGCAGGCAC  100

seq1  CAAACACTGACACTAATTTATATCATGTTGTGTGTCCTTACATTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGACACTAATTTATATCATGTTGTGTGTCCTTACATTTAAAAA  150

seq1  TATTTCAATGGTATCTTTTAAAAAATGAAATAGAAATGCCATAAAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATGGTATCTTTTAAAAAATGAAATAGAAATGCCATAAAATATC  200

seq1  AAATTTCCAACAAATATCCAGAATTAATTCTAATAAAATATAATGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAACAAATATCCAGAATTAATTCTAATAAAATATAATGTTTCA  250

seq1  AGTCAGGGAAGAAACCCTCAGATATGCATCAACAATTTAACAGTCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGAAGAAACCCTCAGATATGCATCAACAATTTAACAGTCTGCTC  300

seq1  ATTTGATCCTGTTAAATTCTTCATGCATACAGCCCCCTCCTTCTGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCCTGTTAAATTCTTCATGCATACAGCCCCCTCCTTCTGTGATG  350

seq1  TACATAATTGGATGCTTACAGTACCTAGAGTATATATAGTTATTTGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATTGGATGCTTACAGTACCTAGAGTATATATAGTTATTTGTTAT  400

seq1  CTACATTTTAGAATGTTCTTTATTCTATTTGAAAGAGAATCACCATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTAGAATGTTCTTTATTCTATTTGAAAGAGAATCACCATGCAG  450

seq1  TTTTTCTTTGTTATCTGGTAAATATATAATCCCTTCTATATCACATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGTTATCTGGTAAATATATAATCCCTTCTATATCACATTTAA  500

seq1  ACCTATTGCTGAAATTGTGGAATTC  525
      |||||||||||||||||||||||||
seq2  ACCTATTGCTGAAATTGTGGAATTC  525

seq1: chr9_38932231_38932946
seq2: B6Ng01-083G16.g_68_783

seq1  GAATTCACCTAGGGATGACAGCTCATTGGGACACAGGATTTCTATATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGGGATGACAGCTCATTGGGACACAGGATTTCTATATAGA  50

seq1  TATTTGGCTGAAGCCAAGAACAGCTGTGTCAGGCGAGAGGAGCAGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCTGAAGCCAAGAACAGCTGTGTCAGGCGAGAGGAGCAGGGCTT  100

seq1  ATAAAAGAGATGTTAAAACATTCTTATGTCAAGTAGATTTATGCTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGATGTTAAAACATTCTTATGTCAAGTAGATTTATGCTGTGAA  150

seq1  TGGTTCCCAGAAGTAAGAATGGTAAATATACAAATGACATGAGAAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAGAAGTAAGAATGGTAAATATACAAATGACATGAGAAAAAGA  200

seq1  CAGACAGACAGACAGAGAGAGAGAGAATAGGTTTCAGAAAAGCAGTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGAGAGAGAGAGAATAGGTTTCAGAAAAGCAGTTGTC  250

seq1  CCCTGTCTGGAACATGTTAGAGAAAGAGAAGGAAAATGAATATAAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTGGAACATGTTAGAGAAAGAGAAGGAAAATGAATATAAGGTAT  300

seq1  GTCAGAGCTTTCCTAGGCACAGGAGAAAATTGGGAGATGCCCAGCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCTTTCCTAGGCACAGGAGAAAATTGGGAGATGCCCAGCTTAAT  350

seq1  CTCTGGATCCTACTGGAGACAATTTTATTTCTGGTTACATCAAGTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCCTACTGGAGACAATTTTATTTCTGGTTACATCAAGTTCTTT  400

seq1  TCCTGCTCTGTCTATTTTCTGTCCTTGGTTGACACATCTGTCCACATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTGTCTATTTTCTGTCCTTGGTTGACACATCTGTCCACATGTC  450

seq1  TGTTTTTGTTTTGTTTTTTTGAATGATTGTTTTTCTGTGTTTCATGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTGTTTTTTTGAATGATTGTTTTTCTGTGTTTCATGTTGA  500

seq1  GAAGAAAAAAAAATTGGATAAAACTTTATCTGCTGGCTATCCACCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAAAATTGGATAAAACTTTATCTGCTGGCTATCCACCACTTG  550

seq1  ATTTGATTTAAGTTGTTTAAAAGGCAGTCTCAATTTGCACAGCAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTAAGTTGTTTAAAAGGCAGTCTCAATTTGCACAGCAAAAACT  600

seq1  GATAAGTTACCCTGCACTGTAGCTGGGAGTCAAGCACAGCTGTAGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTACCCTGCACTGTAGCTGGGAGTCAAGCACAGCTGTAGAAGCC  650

seq1  CTGCTAGGGGCTGATTAGAAAAATCTCTGCAATTGTGTTTATTGTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGGGCTGATTAGAAAAATCTCTGCAATTGTGTTTATTGTGTTCA  700

seq1  GCAAGTGACAAGGTAC  716
      ||||||||||||||||
seq2  GCAAGTGACAAGGTAC  716