BAC Information

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BAC

Clone NameB6Ng01-083M03
Chromosome9 (Build37)
Map Location 100,728,780 - 100,729,975
singlet/doubletsinglet
Overlap geneStag1
Upstream geneSox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
Downstream geneLOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M03.bB6Ng01-083M03.g
ACCDH897929DH897930
length1,2381,173
definitionDH897929|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M03, 5' end.DH897930|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttgtgatggggttaactcactcaagatgatgccttccaggtc
catccatttgcctaggaatttcatgaattcattctttttaatagctgagt
agtacttcattgtgtaaatgtaccacattttctgtatccattcctctgtt
gaggggcatctgggttctttccagcttctggctattataaatagggctgc
tatgaacatagtggagcatgtatccttcttaccggttggaacatcttctg
gatatatgcccaggagaggtattgctggatcctccggaagtactatgtcc
aattttctgaggaaccgccagactgattttcagagtggttgtacaagctt
gcaatcccaccaacaatggaggagtgttcctctttctccacatcctcgcc
agcatctgctgtcacctgaatttttgatcttagccattctgactggtatg
aggtggaatctcagggttgtttgtatttgcattccctgatcattaagtga
tcaagtgaccataggtgtgtgggttcatttctgggtcttcaattctattc
cattggtctacttgtctgtcactataccagtaccatgtagtttttatcac
aattgctctgtagtaaagctttaaggtcaggcacggtgattccaccagag
gaatcattattttttcaggtgcaactcagccattcggtattcctcagggg
agaattctttgtttagctctgagccccattttttaatggggttatttgat
tttctggagtccaccttcttgagttcttatatatattggatattagtccc
ctatttgatttaggataggtaaagatcctttcctaatctgttggtggact
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatgtatcgattcttgatcttatagcacaagccattgctgtt
ctattcaggattttttcccctgtgccatatctttgagcttttccttactt
ctcctctataagtttcagtgtctctgggttaatgtgattcctaatacact
tagattttacttagtacaaggaaaaagatggatcattggcattcttctta
attaataccgcagtgttccagcacatttgttgaatgctggcctttcatga
tgtttggctctggtaagtatcaagacctagggtgggtcaattccgtccat
tctattcatgcttcatgttcgtgccatcacagacatgg
gaattctcagttctttttttcttctatctggtgtatattctggagttatc
ttgtttcagctcacaatgttgctatttagatgtataaggatggaccaatc
ttaatcctttttcactttcttagagattgttggttattctgacataaatc
cagcacctttttatttttgcatatgtgctctttctattctatttcctaag
ggggttttccagtgaaaatatacggacaaattgtttgttttggccctgtc
acatttgcccatgttctttttgctgttttgtgttttttattttatttttg
aggcagaaccttgcttttaaaaccttatctgccttgaagctcaggaacat
tgatcttcctgcctcagtctgctaactgctatatttaaaggagcatagca
ctaggtctgtgtgtcttagtagactctttagatacagtcatattggattt
ttctaggtgctgtcactttttttttcactaatgcataatgcaacaaaaac
gaggtatatcatgttaccaaattttataaacttactgctttttttcttcc
ttgaaacttattccagggttaagaaaatatctgctatatagccatgtcca
tagtccaaaaaaatgtgatattacaacacatttaaaagaacttgtttggc
tgaaataataatagttgaactcagttttcaaacaggttctcagttcttca
ggtatatatactgctttttcagaagtcttctataactcctctcaacatga
tgtccttggagagcattaacctccctttctacttaaaatttcattttcag
ttcttactgtgagttactttctgtgatttaaaattcttattgacatgtat
gtaacaaaagatggtatgtgtgtgtgtgtcagcaactacattagatgttt
aaattcacctgagttcattttgtttatcccctacacatacacacacacac
atacacacaggtcttcacacatttctcttttgttgttcttttttagaaaa
aaattgttagagcaaattttacatagaattgtttgagaaggatcattttg
tgctgtactcatgtatagatttttttaacataagaatatcacttagagct
gctatattttctccaattaagcaccaaactactagtctcctcgattggag
ttgcaatacctgttactagttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100728780_100729975
seq2: B6Ng01-083M03.g_68_1240

seq1  GAATTCTCAGTTCTTTTTTTCTTCTATCTGGTGTATATTCTGGAGTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCTTTTTTTCTTCTATCTGGTGTATATTCTGGAGTTATC  50

seq1  TTGTTTCAGCTCACAATGTTGCTATTTAGATGTATAAGGATGGACCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAGCTCACAATGTTGCTATTTAGATGTATAAGGATGGACCAATC  100

seq1  TTAATCCTTTTTCACTTTCTTAGAGATTGTTGGTTATTCTGACATAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTTTTTCACTTTCTTAGAGATTGTTGGTTATTCTGACATAAATC  150

seq1  CAGCACCTTTTTATTTTTGCATATGTGCTCTTTCTATTCTATTTCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTTTTATTTTTGCATATGTGCTCTTTCTATTCTATTTCCTAAG  200

seq1  GGGGTTTTCCAGTGAAAATATACGGACAAATTGTTTGTTTTGGCCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTCCAGTGAAAATATACGGACAAATTGTTTGTTTTGGCCCTGTC  250

seq1  ACATTTGCCCATGTTCTTTTTGCTGTTTTGTGTTTTTTATTTTATTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCCATGTTCTTTTTGCTGTTTTGTGTTTTTTATTTTATTTTTG  300

seq1  AGGCAGAACCTTGCTTTTAAAACCTTATCTGCCTTGAAGCTCAGGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAACCTTGCTTTTAAAACCTTATCTGCCTTGAAGCTCAGGAACAT  350

seq1  TGATCTTCCTGCCTCAGTCTGCTAACTGCTATATTTAAAGGAGCATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCCTGCCTCAGTCTGCTAACTGCTATATTTAAAGGAGCATAGCA  400

seq1  CTAGGTCTGTGTGTCTTAGTAGACTCTTTAGATACAGTCATATTGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTGTGTGTCTTAGTAGACTCTTTAGATACAGTCATATTGGATTT  450

seq1  TTCTAGGTGCTGTCACTTTTTTTTTCACTAATGCATAATGCAACAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTGCTGTCACTTTTTTTTTCACTAATGCATAATGCAACAAAAAC  500

seq1  GAGGTATATCATGTTACCAAATTTTATAAACTTACTGCTTTTTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATCATGTTACCAAATTTTATAAACTTACTGCTTTTTTTCTTCC  550

seq1  TTGAAACTTATTCCAGGGTTAAGAAAATATCTGCTATATAGCCATGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTATTCCAGGGTTAAGAAAATATCTGCTATATAGCCATGTCCA  600

seq1  TAGTCCAAAAAAATGTGATATTACAACACATTTAAAAGAACTTGTTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAAAAAATGTGATATTACAACACATTTAAAAGAACTTGTTTGGC  650

seq1  TGAAATAATAATAGTTGAACTCAGTTTTCAAACAGGTTCTCAGTTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATAATAGTTGAACTCAGTTTTCAAACAGGTTCTCAGTTCTTCA  700

seq1  GGTATATATACTGCTTTTTCAGAAGTCTTCTATAACTCCTCTCAACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATATACTGCTTTTTCAGAAGTCTTCTATAACTCCTCTCAACATGA  750

seq1  TGTCCTTGGAGAGCATTAACCTCCCTTTCTACTTAAAATTTCATTTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGGAGAGCATTAACCTCCCTTTCTACTTAAAATTTCATTTTCAG  800

seq1  TTCTTACTGTGAGTTACTTTCTGTGATTTAAAATTCTTATTGACATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGTGAGTTACTTTCTGTGATTTAAAATTCTTATTGACATGTAT  850

seq1  GTAACAAAAGATGGTATGTGTGTGTGTGTCAGCAACTACATTAGATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAAGATGGTATGTGTGTGTGTGTCAGCAACTACATTAGATGTTT  900

seq1  AAATTCACCTGAGTTCATTTTGTTTATCCCCTACACATACACACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCTGAGTTCATTTTGTTTATCCCCTACACATACACACACACAC  950

seq1  ATACACACAGGTCTTCACACAATTTCTCTTTTGTTGTTCTTTTTTAAGAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  ATACACACAGGTCTTCACAC-ATTTCTCTTTTGTTGTTCTTTTTT-AGAA  998

seq1  AAAAATTGTTAGAGCAAAATTTTACATAGAATTGTTTGAGACAGGAATTC  1050
      ||||||||||||||| ||||||||||||||||||||||||| ||||  ||
seq2  AAAAATTGTTAGAGC-AAATTTTACATAGAATTGTTTGAGA-AGGA--TC  1044

seq1  ATTTTGTGCTGTACTTCATGTAATAGATCTTTTTAACATACAGAATTATT  1100
      |||||||||||||| |||||| |||||| ||||||||||| |||||   |
seq2  ATTTTGTGCTGTAC-TCATGT-ATAGATTTTTTTAACATA-AGAAT--AT  1089

seq1  CACTTTAGAGCTGCTATAATTTCTCCCATATAAGCAACAAAACTACTAGT  1150
      ||| |||||||||||||| ||||||| || ||||| || |||||||||||
seq2  CAC-TTAGAGCTGCTATATTTTCTCCAAT-TAAGC-ACCAAACTACTAGT  1136

seq1  TTCTCCCTCAGATTTTGAGTTGCAATAACTTGTTTCATCTAGTTAC  1196
       |   |||| || || |||||||||| || ||||    ||||||||
seq2  CT---CCTC-GA-TTGGAGTTGCAAT-ACCTGTT---ACTAGTTAC  1173