BAC Information

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BAC

Clone NameB6Ng01-083O19
Chromosome9 (Build37)
Map Location 89,357,415 - 89,475,770
singlet/doubletdoublet
Overlap genenone
Upstream geneSyncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O19.bB6Ng01-083O19.g
ACCDH898043DH898044
length1,1651,192
definitionDH898043|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O19, 5' end.DH898044|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,357,415 - 89,358,586)(89,474,591 - 89,475,770)
sequence
gaattcccagcagatcctattccatggggacagggattatcattcttgcc
ttggagtgtataaaactgaatattgcaaatggcattcttataggtaatca
atgaaaactgttttgattgtttgttttctcattttaaaaacacatcctgc
atgccttgacttgcaatgtctattcacaaatgataattctttccccttca
tctttaaaccattcctttctaatagggattattatccccattttacttgt
gaaattgtgtaactttcctatactcagtgttcaaaagttctaggagcagt
tttcaaactcatcctcttgtttgctaatgattccagcatccctcctccta
gcctagcatgtcatggctccagcatccctcctcctggtctagtgtgtcct
gctccagcatccctcctcttaatctagcatgtcacttacttattttgtca
ttcatcccttggatcagcaaacatttctgggttccctcattcttgttcta
aatctagtgctaaacactgagaatagcaatgccaaaacataggttcatcc
ttgaggaattcccagactggtgaagaaatcaaatgggcatctgataatgc
caaattagtgtgctaagacactggggaatgttgtaaaattgaagactttt
actcagtacatttattgagcatttacaggtggcttgatctatgagaacaa
ccaaaggagacacaggcacaaatgtctcttttaggtgccccaggctaacg
gtcaaagggcaaaaggaagcatcaacctcagatatgcaacaaatatacct
gtttaccaataattgaacttagctctattctagctcatgttgtgtcagag
cagaagaaacttagcatcaatcacaggtagtttgaagtttccaagggatg
tagaaagtccttggtgatgggtgttctgaaatatagaaaagtccttggtg
atgggtagagatgggtcagagcagaggcatctatttatttttattcattg
acccctttctatggtcctcccatgtttctacatggtaaggagaacattct
cctcattctgagtgatacatgggaaagagaagggtggtaccatagccatg
gctgcttgggagcactgagttctatttataagagatcttgtaccaatcca
ttctctgtgtggtaa
gaattcaggctttgcgatttcccactggctttctcgaacatgaacatgaa
tcattgagttcttgctgaacttggattttatttatatcttcattagtccc
tgtgatgtcaaggaacagaacaagctatgttgcacagaagatacgacact
tggctggagcagtggcacatgcttataactccaccatttggagcactgag
caggacagccagtagtttgagaatactgccctatatagtgagtaccaagc
caaccaggattgagaccccccatctcaatccaaaactaaccaaacccaga
agcaaaaccacatcagaacagcattaactatccccaaaacaataaagaag
aaaagtaccattgtagtattggaaaataaattagaacctgaaaacaggaa
gacagcctgtgaatttctgggcagaagcaggctctgcattcagccagtgg
aagaatgtccctgataaacagtctctgtgactctcaacctggattccagc
tcattgtggcttaattaaaattcctaaaagattcatcaagtcccgcacat
aaaagtattgttagaagcggcagtgcaagggtggttattacaaatacagt
tttctttcatttatcatggaaagcacttaataagttatgcctatatgcct
gaatggtcaccacactaataaagaagttgacgtggcattttcatgctggc
gactcagagttatgttctacattttaaagagtcttgtataatttcaagag
tcccaagaaggagctcattttctgtcaaccatatttgatctacatgtatc
cacaaactcaattagcacttggttgcttttcttattacagtcctgcttca
ccactaacaatgtccattgaactgaccccccactgttggacttgctcatt
tatgcacttcgccaattgatatttattgaccaaacaaacagtaatattca
aagacatggcttgtgatgaatgttacctgtgatgcctctagaatccatca
gtcttgtataataccaagaatgcttagtaaagcttcctgagttatatagg
tgatgaaaggaatggaagtcttttctctggccttctcataaattaagtgc
gaatgccatgttcaaacataatagtgaaaccttaaataaatttcaagttc
acctcatatgtacaacaatgtgagggaatgaaatgctctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89357415_89358586
seq2: B6Ng01-083O19.b_45_1209

seq1  GAATTCCCAGCAGATCCTATTCCATGGGGACAGGGATTATCATTCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCAGATCCTATTCCATGGGGACAGGGATTATCATTCTTGCC  50

seq1  TTGGAGTGTATAAAACTGAATATTGCAAATGGCATTCTTATAGGTAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGTATAAAACTGAATATTGCAAATGGCATTCTTATAGGTAATCA  100

seq1  ATGAAAACTGTTTTGATTGTTTGTTTTCTCATTTTAAAAACACATCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTGTTTTGATTGTTTGTTTTCTCATTTTAAAAACACATCCTGC  150

seq1  ATGCCTTGACTTGCAATGTCTATTCACAAATGATAATTCTTTCCCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGACTTGCAATGTCTATTCACAAATGATAATTCTTTCCCCTTCA  200

seq1  TCTTTAAACCATTCCTTTCTAATAGGGATTATTATCCCCATTTTACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAACCATTCCTTTCTAATAGGGATTATTATCCCCATTTTACTTGT  250

seq1  GAAATTGTGTAACTTTCCTATACTCAGTGTTCAAAAGTTCTAGGAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTGTAACTTTCCTATACTCAGTGTTCAAAAGTTCTAGGAGCAGT  300

seq1  TTTCAAACTCATCCTCTTGTTTGCTAATGATTCCAGCATCCCTCCTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTCATCCTCTTGTTTGCTAATGATTCCAGCATCCCTCCTCCTA  350

seq1  GCCTAGCATGTCATGGCTCCAGCATCCCTCCTCCTGGTCTAGTGTGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCATGTCATGGCTCCAGCATCCCTCCTCCTGGTCTAGTGTGTCCT  400

seq1  GCTCCAGCATCCCTCCTCTTAATCTAGCATGTCACTTACTTATTTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCATCCCTCCTCTTAATCTAGCATGTCACTTACTTATTTTGTCA  450

seq1  TTCATCCCTTGGATCAGCAAACATTTCTGGGTTCCCTCATTCTTGTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCTTGGATCAGCAAACATTTCTGGGTTCCCTCATTCTTGTTCTA  500

seq1  AATCTAGTGCTAAACACTGAGAATAGCAATGCCAAAACATAGGTTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTGCTAAACACTGAGAATAGCAATGCCAAAACATAGGTTCATCC  550

seq1  TTGAGGAATTCCCAGACTGGTGAAGAAATCAAATGGGCATCTGATAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAATTCCCAGACTGGTGAAGAAATCAAATGGGCATCTGATAATGC  600

seq1  CAAATTAGTGTGCTAAGACACTGGGGAATGTTGTAAAATTGAAGACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGTGTGCTAAGACACTGGGGAATGTTGTAAAATTGAAGACTTTT  650

seq1  ACTCAGTACATTTATTGAGCATTTACAGGTGGCTTGATCTATGAGAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTACATTTATTGAGCATTTACAGGTGGCTTGATCTATGAGAACAA  700

seq1  CCAAAGGAGACACAGGCACAAATGTCTCTTTTAGGTGCCCCAGGCTAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAGACACAGGCACAAATGTCTCTTTTAGGTGCCCCAGGCTAACG  750

seq1  GTCAAAGGGCAAAAGGAAGCATCAACCTCAGATATGCAACAAATATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGGCAAAAGGAAGCATCAACCTCAGATATGCAACAAATATACCT  800

seq1  GTTTACCAATAATTGAACTTAGCTCTATTCTAGCTCATGTTGTGTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAATAATTGAACTTAGCTCTATTCTAGCTCATGTTGTGTCAGAG  850

seq1  CAGAAGAAACTTAGCATCAATCACAGGTAGTTTGAAGTTTCCAAGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAACTTAGCATCAATCACAGGTAGTTTGAAGTTTCCAAGGGATG  900

seq1  TAGAAAGTCCTTGGTGATGGGTGTTCTGAGATATAGAAAAAGTCCTTGGT  950
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TAGAAAGTCCTTGGTGATGGGTGTTCTGAAATATAG-AAAAGTCCTTGGT  949

seq1  GATGGGTAGAGATGGGTCAGAGCAGAGGCATCTA-TTATTTTTATCCATT  999
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GATGGGTAGAGATGGGTCAGAGCAGAGGCATCTATTTATTTTTATTCATT  999

seq1  GACCCCTTTCTATGGTCCTCCCATG-TTCTACATGGGTAAGGAAGACCAT  1048
      ||||||||||||||||||||||||| |||||||| ||||||| ||| || 
seq2  GACCCCTTTCTATGGTCCTCCCATGTTTCTACAT-GGTAAGG-AGAACA-  1046

seq1  TTCTCCTCATTCTGAGTGATACAT-GGAAAGAGAGGGTGGGTACCATAGC  1097
      |||||||||||||||||||||||| ||||||||| ||  |||||||||||
seq2  TTCTCCTCATTCTGAGTGATACATGGGAAAGAGAAGGGTGGTACCATAGC  1096

seq1  CATGGCTGCCTTTGGGAAGCTATCTGAGGTTCTATTTA-ATAAGATCTTG  1146
      |||||||||  ||||| |||   |||| |||||||||| |  ||||||||
seq2  CATGGCTGC--TTGGG-AGC--ACTGA-GTTCTATTTATAAGAGATCTTG  1140

seq1  TCACCATCCCATTCTCTGTGTGGGAA  1172
      | ||||  ||||||||||||||| ||
seq2  T-ACCAATCCATTCTCTGTGTGGTAA  1165

seq1: chr9_89474591_89475770
seq2: B6Ng01-083O19.g_69_1260 (reverse)

seq1  CACACAGCATTTCATTTCCTTCCTTTTGTTGTACATAT-TGGTGA--CTG  47
      |||| ||||||||| |||| ||   |||||||||||||  |||||   ||
seq2  CACAGAGCATTTCA-TTCCCTCACATTGTTGTACATATGAGGTGAACTTG  49

seq1  AAA-TTATTTA--GTTTCACTATTAATTGTCTGAACAT-GCATTCGCACT  93
      ||| |||||||  ||||||||||||  ||| ||||||| |||||||||||
seq2  AAATTTATTTAAGGTTTCACTATTA--TGTTTGAACATGGCATTCGCACT  97

seq1  AAATTTATGAG-AGGCCAGAGGAAAGACTT-CATTCCTTCCATCA-CTAT  140
       |||||||||| ||||||||| |||||||| |||||||| ||||| ||||
seq2  TAATTTATGAGAAGGCCAGAGAAAAGACTTCCATTCCTTTCATCACCTAT  147

seq1  AT-ACTCAGGAAACCTTACTAAGCAT--CTGGTA-TATACAAGACTGATG  186
      || ||||||||| | |||||||||||   ||||| |||||||||||||||
seq2  ATAACTCAGGAAGCTTTACTAAGCATTCTTGGTATTATACAAGACTGATG  197

seq1  GA-TCTAGAGGCATCACAGGTAACAATTCATCAACAAGCCATGTCTTTGA  235
      || ||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GATTCTAGAGGCATCACAGGTAAC-ATTCATC-ACAAGCCATGTCTTTGA  245

seq1  ATA-TACTGTTTGTTTGGTCAATAAATATCAATTGGCGAAGTGCATAAAT  284
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTGTTTGTTTGGTCAATAAATATCAATTGGCGAAGTGCATAAAT  295

seq1  GAGCAAGTCCAACAGTGGGGGGTCAGTTCAATGGACATTGTTAGTGGTGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTCCAACAGTGGGGGGTCAGTTCAATGGACATTGTTAGTGGTGA  345

seq1  AGCAGGACTGTAATAAG-AAAGCAACCAAGTGCTAATTGAGTTTGTGGAT  383
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCAGGACTGTAATAAGAAAAGCAACCAAGTGCTAATTGAGTTTGTGGAT  395

seq1  ACATGTAGATCAAATATGGTTGACAGAAAATGAGCTCCTTCTTGGGACTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGATCAAATATGGTTGACAGAAAATGAGCTCCTTCTTGGGACTC  445

seq1  TTGAAATTATACAAGACTCTTTAAAATGTAGAACATAACTCTGAGTCGCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTATACAAGACTCTTTAAAATGTAGAACATAACTCTGAGTCGCC  495

seq1  AGCATGAAAATGCCACGTCAACTTCTTTATTAGTGTGGTGACCATTCAGG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAAATGCCACGTCAACTTCTTTATTAGTGTGGTGACCATTCAGG  545

seq1  CATATAGGCATAACTTATTAAGTGCTTTCCATGATAAATGAAAGAAAACT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGCATAACTTATTAAGTGCTTTCCATGATAAATGAAAGAAAACT  595

seq1  GTATTTGTAATAACCACCCTTGCACTGCCGCTTCTAACAATACTTTTATG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTAATAACCACCCTTGCACTGCCGCTTCTAACAATACTTTTATG  645

seq1  TGCGGGACTTGATGAATCTTTTAGGAATTTTAATTAAGCCACAATGAGCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGACTTGATGAATCTTTTAGGAATTTTAATTAAGCCACAATGAGCT  695

seq1  GGAATCCAGGTTGAGAGTCACAGAGACTGTTTATCAGGGACATTCTTCCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAGGTTGAGAGTCACAGAGACTGTTTATCAGGGACATTCTTCCA  745

seq1  CTGGCTGAATGCAGAGCCTGCTTCTGCCCAGAAATTCACAGGCTGTCTTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAATGCAGAGCCTGCTTCTGCCCAGAAATTCACAGGCTGTCTTC  795

seq1  CTGTTTTCAGGTTCTAATTTATTTTCCAATACTACAATGGTACTTTTCTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCAGGTTCTAATTTATTTTCCAATACTACAATGGTACTTTTCTT  845

seq1  CTTTATTGTTTTGGGGATAGTTAATGCTGTTCTGATGTGGTTTTGCTTCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTTTTGGGGATAGTTAATGCTGTTCTGATGTGGTTTTGCTTCT  895

seq1  GGGTTTGGTTAGTTTTGGATTGAGATGGGGGGTCTCAATCCTGGTTGGCT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTTAGTTTTGGATTGAGATGGGGGGTCTCAATCCTGGTTGGCT  945

seq1  TGGTACTCACTATATAGGGCAGTATTCTCAAACTACTGGCTGTCCTGCTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTCACTATATAGGGCAGTATTCTCAAACTACTGGCTGTCCTGCTC  995

seq1  AGTGCTCCAAATGGTGGAGTTATAAGCATGTGCCACTGCTCCAGCCAAGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCAAATGGTGGAGTTATAAGCATGTGCCACTGCTCCAGCCAAGT  1045

seq1  GTCGTATCTTCTGTGCAACATAGCTTGTTCTGTTCCTTGACATCACAGGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATCTTCTGTGCAACATAGCTTGTTCTGTTCCTTGACATCACAGGG  1095

seq1  ACTAATGAAGATATAAATAAAATCCAAGTTCAGCAAGAACTCAATGATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGAAGATATAAATAAAATCCAAGTTCAGCAAGAACTCAATGATTC  1145

seq1  ATGTTCATGTTCGAGAAAGCCAGTGGGAAATCGCAAAGCCTGAATTC  1180
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGTTCGAGAAAGCCAGTGGGAAATCGCAAAGCCTGAATTC  1192