BAC Information

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BAC

Clone NameB6Ng01-084E14
Chromosome9 (Build37)
Map Location 14,166,175 - 14,327,179
singlet/doubletdoublet
Overlap geneEndod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik
Upstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
Downstream geneAmotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E14.bB6Ng01-084E14.g
ACCDH898287DH898288
length1,0421,140
definitionDH898287|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E14, 5' end.DH898288|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,326,141 - 14,327,179)(14,166,175 - 14,167,328)
sequence
gaattcaacccaagttatgtaccaaatgttaagagtttactgaatcctga
acagaccaaaaggagcctcatccaccaacaggctcggtcagggggctgga
ctgtgctgttggtggaggtgggttgaatgcaagaagagacacacacagaa
cacatgccacagaactaggatcttgggtgctgaggtagagtttgggaaat
gagctgtgctgaaggattctgtacaggaagaaggagatggtgaccccatc
aaagccttggtcaaaccgagtgggtgctggagcaaaatttgcttgctgtg
aggtttccagtcagcctgaacctcctgggtgtctccatatgcccacgtct
ctggatgtagagctgaaggttgggaagtcctcacgtaatagcctacaggg
aagaactatttactttgtgccttagtttcaaaggtttcccttgtcagtcc
ttgcctccatgggttttgagcctgtggtgaggtggggattggtgaccgag
accactcagttcatggctgacaggaaacaggaaacatcaagcaagagctg
cgtcccagtgctgtctttctattccagccaggcacctaagcttctgggct
ggtgttgctggaattcagagtgactcctttcccctaattaatcctctctg
caaacatccttgcagacacacccggtgtgctttcctaatctcctcaatcc
agtcatgtttgataatcaagtgtaaacatcacaaggtttatccctttaag
ggtgctgggacagcagctgcctctgtctgctgatgggagggcagagtgcc
atagaaagcatgtagtgacctttgtgcacatctcagacaggctgtagact
ggcacccttacagacaaccctgaaacactttgcagaaagaatgtacagcc
cacttaaaggttttggggcttgagtcatttagttgaggagatttcttggt
gaagtcagaggaagaaaagctggaagaacatgtcgagaaaggatggactg
agtaaggatgtattctgggggattctgtcttgaacccatgca
gaattccaggacagcaagagttacatagagagaccctgtcattaaaagat
gaaaagaacttactttgcttaaatctctcttctcagactggctgcttagg
ggctggaatgagcatgttttagtaccttcagtgaaggtgccaagagtttg
acaggaaccccacaggttctaatgtgctttctgttgctgtcacaaacacc
atggcctaaagcaatttaggggaagaaaaggcttatttcacctaacgctg
ccacgtcacagactgtcatggatgaaagtcagggcaggaattttaaggca
ggagcctgagacagaagccaggaaggatggttgtttgctagtttaaactc
agatttgttcagctggcttccatatatagcggaggaataggcctgcccac
agagggcccggccctcctatagcaactagtaatcaagacattcctgagcc
aactgtgtaggcagttcctcaagtgaggcttcactcagctgactgtaggc
tgggtcaagtgacaaccatcatcatcacaggggtatggggactcccagac
tgtccccaagtcacatagggcaacttttgaaacacaggattctattactc
aaactgaaaaatagttgagtgtgggcaatttcaaacgttcttactgtact
ctctggcctgctgtcacctggagggcagatgtatttttccgcaccctaga
gatctagcttaatgatctgcttactgcaactgcagtaaattaatgacaac
agagatccctgaagacaacacgatacctatgacagaagtagcaacttcag
attaggtatagtctccaggttacacccgcccgctggcagccctagatttg
ctggttccccaggggcatctctgtaagggagagaatatacagggcctagt
ctgcttcccagctgacgccatccctctgcactgatgtgtcatttgatgta
gtagctgtatttaaggaatgttttttctagatcacatgtttaatagtttt
agaagagcagctgtctattttactagtctgcaacctccaataaacttaaa
taattcctttcaaatttagtaccagagaagatgtttttccaacagctggt
ttcctccttaacgatatttaaccatgattttaaacccgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_14326141_14327179
seq2: B6Ng01-084E14.b_42_1083 (reverse)

seq1  TGCATTGGGTTCAGGACAGACTCCCCAAGAATACATCCTTACTCAGTCCA  50
      |||| |||||||| |||||| ||||| |||||||||||||||||||||||
seq2  TGCA-TGGGTTCAAGACAGAATCCCCCAGAATACATCCTTACTCAGTCCA  49

seq1  TTCCTTTCTCGACATGGTTCTCCAGCTTCTCTTCCTCTGACTTCACCAAG  100
       ||||||||||||||| |  |||||||| |||||||||||||||||||||
seq2  -TCCTTTCTCGACATGTTCTTCCAGCTTTTCTTCCTCTGACTTCACCAAG  98

seq1  AAATCTCCCTCACTAAATGACTCAGGCCCCAAACCCTTT-AGTGGGCTGT  149
      ||||||||   ||||||||||||| |||||||| ||||| ||||||||||
seq2  AAATCTCCTCAACTAAATGACTCAAGCCCCAAAACCTTTAAGTGGGCTGT  148

seq1  ACATTCTTTCTGCAAAGTGTTTCAGGGTTGTCTGTAAGGGTGCCAGTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTCTGCAAAGTGTTTCAGGGTTGTCTGTAAGGGTGCCAGTCTA  198

seq1  CAGCCTGTCTGAGATGTGCACAAAGGTCACTACATGC-TTCTATGGCACT  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCCTGTCTGAGATGTGCACAAAGGTCACTACATGCTTTCTATGGCACT  248

seq1  CTGCCCT-CCATCAGCAGACAGAGGCAGCTGCTGTCCCAGCACCCTT-AA  296
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGCCCTCCCATCAGCAGACAGAGGCAGCTGCTGTCCCAGCACCCTTAAA  298

seq1  GGGATAAACCTTGTGATGTTTACACTTGATTATC-AACATGACTGGATTG  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGATAAACCTTGTGATGTTTACACTTGATTATCAAACATGACTGGATTG  348

seq1  AGGAGATTAGGAAAGCACACCGGGTGTGTCTGCAAGGATGTTTGCAGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTAGGAAAGCACACCGGGTGTGTCTGCAAGGATGTTTGCAGAGA  398

seq1  GGATTAATTAGGGGAAAGGAGTCACTCTGAATTCCAGCAACACCAGCCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATTAGGGGAAAGGAGTCACTCTGAATTCCAGCAACACCAGCCCA  448

seq1  GAAGCTTAGGTGCCTGGCTGGAATAGAAAGACAGCACTGGGACGCAGCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTAGGTGCCTGGCTGGAATAGAAAGACAGCACTGGGACGCAGCTC  498

seq1  TTGCTTGATGTTTCCTGTTTCCTGTCAGCCATGAACTGAGTGGTCTCGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGATGTTTCCTGTTTCCTGTCAGCCATGAACTGAGTGGTCTCGGT  548

seq1  CACCAATCCCCACCTCACCACAGGCTCAAAACCCATGGAGGCAAGGACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCCCCACCTCACCACAGGCTCAAAACCCATGGAGGCAAGGACTG  598

seq1  ACAAGGGAAACCTTTGAAACTAAGGCACAAAGTAAATAGTTCTTCCCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAAACCTTTGAAACTAAGGCACAAAGTAAATAGTTCTTCCCTGT  648

seq1  AGGCTATTACGTGAGGACTTCCCAACCTTCAGCTCTACATCCAGAGACGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTACGTGAGGACTTCCCAACCTTCAGCTCTACATCCAGAGACGT  698

seq1  GGGCATATGGAGACACCCAGGAGGTTCAGGCTGACTGGAAACCTCACAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATGGAGACACCCAGGAGGTTCAGGCTGACTGGAAACCTCACAGC  748

seq1  AAGCAAATTTTGCTCCAGCACCCACTCGGTTTGACCAAGGCTTTGATGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTTTGCTCCAGCACCCACTCGGTTTGACCAAGGCTTTGATGGG  798

seq1  GTCACCATCTCCTTCTTCCTGTACAGAATCCTTCAGCACAGCTCATTTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATCTCCTTCTTCCTGTACAGAATCCTTCAGCACAGCTCATTTCC  848

seq1  CAAACTCTACCTCAGCACCCAAGATCCTAGTTCTGTGGCATGTGTTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTACCTCAGCACCCAAGATCCTAGTTCTGTGGCATGTGTTCTGT  898

seq1  GTGTGTCTCTTCTTGCATTCAACCCACCTCCACCAACAGCACAGTCCAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCTTCTTGCATTCAACCCACCTCCACCAACAGCACAGTCCAGC  948

seq1  CCCCTGACCGAGCCTGTTGGTGGATGAGGCTCCTTTTGGTCTGTTCAGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACCGAGCCTGTTGGTGGATGAGGCTCCTTTTGGTCTGTTCAGGA  998

seq1  TTCAGTAAACTCTTAACATTTGGTACATAACTTGGGTTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAACTCTTAACATTTGGTACATAACTTGGGTTGAATTC  1042

seq1: chr9_14166175_14167328
seq2: B6Ng01-084E14.g_69_1208

seq1  GAATTCCAGGACAGCAAGAGTTACATAGAGAGACCCTGTCATTAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCAAGAGTTACATAGAGAGACCCTGTCATTAAAAGAT  50

seq1  GAAAAGAACTTACTTTGCTTAAATCTCTCTTCTCAGACTGGCTGCTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAACTTACTTTGCTTAAATCTCTCTTCTCAGACTGGCTGCTTAGG  100

seq1  GGCTGGAATGAGCATGTTTTAGTACCTTCAGTGAAGGTGCCAAGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAATGAGCATGTTTTAGTACCTTCAGTGAAGGTGCCAAGAGTTTG  150

seq1  ACAGGAACCCCACAGGTTCTAATGTGCTTTCTGTTGCTGTCACAAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACCCCACAGGTTCTAATGTGCTTTCTGTTGCTGTCACAAACACC  200

seq1  ATGGCCTAAAGCAATTTAGGGGAAGAAAAGGCTTATTTCACCTAACGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAAAGCAATTTAGGGGAAGAAAAGGCTTATTTCACCTAACGCTG  250

seq1  CCACGTCACAGACTGTCATGGATGAAAGTCAGGGCAGGAATTTTAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCACAGACTGTCATGGATGAAAGTCAGGGCAGGAATTTTAAGGCA  300

seq1  GGAGCCTGAGACAGAAGCCAGGAAGGATGGTTGTTTGCTAGTTTAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGAGACAGAAGCCAGGAAGGATGGTTGTTTGCTAGTTTAAACTC  350

seq1  AGATTTGTTCAGCTGGCTTCCATATATAGCGGAGGAATAGGCCTGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTTCAGCTGGCTTCCATATATAGCGGAGGAATAGGCCTGCCCAC  400

seq1  AGAGGGCCCGGCCCTCCTATAGCAACTAGTAATCAAGACATTCCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCCGGCCCTCCTATAGCAACTAGTAATCAAGACATTCCTGAGCC  450

seq1  AACTGTGTAGGCAGTTCCTCAAGTGAGGCTTCACTCAGCTGACTGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTAGGCAGTTCCTCAAGTGAGGCTTCACTCAGCTGACTGTAGGC  500

seq1  TGGGTCAAGTGACAACCATCATCATCACAGGGGTATGGGGACTCCCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAAGTGACAACCATCATCATCACAGGGGTATGGGGACTCCCAGAC  550

seq1  TGTCCCCAAGTCACATAGGGCAACTTTTGAAACACAGGATTCTATTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAAGTCACATAGGGCAACTTTTGAAACACAGGATTCTATTACTC  600

seq1  AAACTGAAAAATAGTTGAGTGTGGGCAA-TTCAAACGTTCTTACTGTACT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACTGAAAAATAGTTGAGTGTGGGCAATTTCAAACGTTCTTACTGTACT  650

seq1  CTCTGGCCTGCTGTCACCTGGAGGGCAGATGTA-TTTTCCGCACCCTAGA  698
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGGCCTGCTGTCACCTGGAGGGCAGATGTATTTTTCCGCACCCTAGA  700

seq1  GATCTAGCTTAATGATCTGCTTACTGCAACTGCAGTAAATTAATGACAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCTTAATGATCTGCTTACTGCAACTGCAGTAAATTAATGACAAC  750

seq1  AGAGATCCCTGAAGACAACACGATACCTATGACAGAAGTAGCAACTTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCCTGAAGACAACACGATACCTATGACAGAAGTAGCAACTTCAG  800

seq1  ATTAGGTATAGTCTCCAGGTTACACCCGCCCGCTGGCAGCCCTAGATTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATAGTCTCCAGGTTACACCCGCCCGCTGGCAGCCCTAGATTTG  850

seq1  CTGGTTCCCCAGGGGCATCTCTGT-AGGGAGAGAATATACAGGGCCTAGT  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGGTTCCCCAGGGGCATCTCTGTAAGGGAGAGAATATACAGGGCCTAGT  900

seq1  CTGCCTCCCAGCTGACGCCATCCCTCTGCACTGATGGTGTCATTTGATGT  947
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGCTTCCCAGCTGACGCCATCCCTCTGCACTGAT-GTGTCATTTGATGT  949

seq1  AGTAGCTGTATTTAATGGAATGTTTTTCTCTAAGATCAACATGTTAAATA  997
      ||||||||||||||| ||||||||||| ||| ||||| ||||||| ||||
seq2  AGTAGCTGTATTTAA-GGAATGTTTTT-TCT-AGATC-ACATGTTTAATA  995

seq1  GGTTTTAGAAGAAGCAGCTGTCTATTTTACTAGTCTGCAACCTCACAAAT  1047
       |||||||||| |||||||||||||||||||||||||||||||  | |||
seq2  -GTTTTAGAAG-AGCAGCTGTCTATTTTACTAGTCTGCAACCT--CCAAT  1041

seq1  AACCTTAAATAAATTCCTTTTCAAATTTAGTACCAAGAGAAGAGTGTTTC  1097
      || ||||||| |||||| |||||||||||||||| |||||||| ||||| 
seq2  AAACTTAAAT-AATTCC-TTTCAAATTTAGTACC-AGAGAAGA-TGTTTT  1087

seq1  TCAACAAGCTTGTTTCTTCCTTAACAGATATTTAAACCCATGATTTTTAA  1147
      || |  |||| ||||| |||||||| |||||||||  |||||| ||||||
seq2  TCCAACAGCTGGTTTCCTCCTTAAC-GATATTTAA--CCATGA-TTTTAA  1133

seq1  ACCCGTG  1154
      |||||||
seq2  ACCCGTG  1140