BAC Information

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BAC

Clone NameB6Ng01-084M05
Chromosome9 (Build37)
Map Location 4,685,595 - 4,777,455
singlet/doubletdoublet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084M05.bB6Ng01-084M05.g
ACCDH898620DH898621
length1,2391,225
definitionDH898620|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M05, 5' end.DH898621|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,685,595 - 4,686,773)(4,776,212 - 4,777,455)
sequence
gaattcaatgttaaaagtgtctttgtatgctgttgggaaagtttatcaag
gaagaaaaccagaggagttcatagaaaacaaagaatgagaacaggctctt
aaggacatagaaaacgtgccaattctaccctacaagagttttatgtataa
tataatttctatactctataatgcccatataacttatgaggaaataagtt
attacttattttcttgcaaaaaagcaccagcttggcatatgaatcacatt
tatttcctgctcactatgttcaaactatatagatatatgggcactgatca
tataagtgccttcttttatatattaattttacaggaaaatatcattcttt
gacttgatcattttgtaatagtaaggtagaaatttctgcttgttatcaca
cactgtaaactaaaagatctcaatttactcctagacattgactgcagcac
cggacagagattaatatgaaaaatgatacggaaatcaggctttaagtatg
agataaacattctagacatttaaatacaccaaagaaggcagtgaatgcaa
aagaaatagatacagtgcttagcattgtgatgttgactgtagtaggtgct
gcctggtgtctgaagctcttaccttatgcattctgaggtttggttgctga
aattagggtcagaatctgaactctgacagtcctaataagtcaagtttggc
tgcccattctccaataactcaactaaacaaataaaaatgaaagactgaaa
attatttatacaatgtggctaccttggagaagaaagcaaagaaatctatt
aacaggtcacagtcatctttgtggtgttaccttgaagccttgtggacaat
atctatgtataggtaagcaacctttgacatggtgtggtcctacccatcac
cactagactccagtctctacaagctcagttctggttgttattctttttct
gagagcagttttgtgccgtgttggttagtgttctatcttcttccctccac
tgtgcatgagattctggatggaaactcagttctttgggatccattgttaa
atttctataacaaaggggaaaaatagaatagactttttttctataagaaa
tcttagcatatgttctctcttgcgacagttaaatgtactgtttaattttc
aggctagaacactccaagcgcgcaatgagtaacactctccaccttttata
ccctgcaattcacgttatacttagctgggcctagaacac

gaattcatcacccttaagcatacttttgcttttttcatggtttaaactta
tgtttgtgctttactttgataagtattgcttataaatgtttcagtttctt
aaatatctagcatatgttggtgagtggaaaagtaggctgttttgggttgc
aattttattagaaccatgatatatacaaaagatggaaaaatctaaaatgc
tataagaattctgttttttaacaatattttatattttatttcatacattt
ctgaatctgtcacttgtttagaaagagtgtttgcacttgatttagttgat
aatatctaaataaaagaaagtattttttttaacattcacactaaatattg
agttcatctttttgtacccacaagggaaaagatacattagactctaattc
atctaattattagagatatttcaagatatgtttgccagtatcagactgta
gtgaaagaatgcctcgctcacttagcagttaccataggaatgtttttgct
tagacacatcatccatttcaaaatgtgaatagcaggatttgtgtgtggta
ttgtggaccttgaagatgcttggtaagttctacaccccagccaaaaccct
cattaatgaaatgaagttattgttgttgatatttgctgactttagttctt
gttgttaaaatgtcattgattatactattttctttgcctattgagtattg
taactttctaacgatccaagatagactgatatattgtttgcacgttttag
tacagccattgaaagagatgatacggtatggacacctagttgcttatgat
agggagttgtttgtgactacccagctagtttgtccctccactgtgctctg
gccccatgctactttgagattatatttttgtaaaatgtttccattgggtt
ttctaacccttttggataagggctcctgatgaaagataatatggaatgga
gattgaattcctcatggtgaaaatagtactacattagttatacatagttg
attagtaaatcaaattagttattttttcagatgctgtgatcattgtaagc
tgagtcatcacaggatgtgaaagcaaggaatgatgatagagacacaaatt
gaatccctccaggaaggacatttatttccacttgctgttatataattgcc
tgcctagctacaaagagaattgtaagccagactttggtcacagaggaata
catgaccccttactgagatcttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4685595_4686773
seq2: B6Ng01-084M05.b_49_1287

seq1  GAATTCAATGTTAAAAGTGTCTTTGTATGCTGTTGGGAAAGTTTATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTAAAAGTGTCTTTGTATGCTGTTGGGAAAGTTTATCAAG  50

seq1  GAAGAAAACCAGAGGAGTTCATAGAAAACAAAGAATGAGAACAGGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCAGAGGAGTTCATAGAAAACAAAGAATGAGAACAGGCTCTT  100

seq1  AAGGACATAGAAAACGTGCCAATTCTACCCTACAAGAGTTTTATGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGAAAACGTGCCAATTCTACCCTACAAGAGTTTTATGTATAA  150

seq1  TATAATTTCTATACTCTATAATGCCCATATAACTTATGAGGAAATAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCTATACTCTATAATGCCCATATAACTTATGAGGAAATAAGTT  200

seq1  ATTACTTATTTTCTTGCAAAAAAGCACCAGCTTGGCATATGAATCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATTTTCTTGCAAAAAAGCACCAGCTTGGCATATGAATCACATT  250

seq1  TATTTCCTGCTCACTATGTTCAAACTATATAGATATATGGGCACTGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGCTCACTATGTTCAAACTATATAGATATATGGGCACTGATCA  300

seq1  TATAAGTGCCTTCTTTTATATATTAATTTTACAGGAAAATATCATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGCCTTCTTTTATATATTAATTTTACAGGAAAATATCATTCTTT  350

seq1  GACTTGATCATTTTGTAATAGTAAGGTAGAAATTTCTGCTTGTTATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATCATTTTGTAATAGTAAGGTAGAAATTTCTGCTTGTTATCACA  400

seq1  CACTGTAAACTAAAAGATCTCAATTTACTCCTAGACATTGACTGCAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAACTAAAAGATCTCAATTTACTCCTAGACATTGACTGCAGCAC  450

seq1  CGGACAGAGATTAATATGAAAAATGATACGGAAATCAGGCTTTAAGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAGAGATTAATATGAAAAATGATACGGAAATCAGGCTTTAAGTATG  500

seq1  AGATAAACATTCTAGACATTTAAATACACCAAAGAAGGCAGTGAATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACATTCTAGACATTTAAATACACCAAAGAAGGCAGTGAATGCAA  550

seq1  AAGAAATAGATACAGTGCTTAGCATTGTGATGTTGACTGTAGTAGGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGATACAGTGCTTAGCATTGTGATGTTGACTGTAGTAGGTGCT  600

seq1  GCCTGGTGTCTGAAGCTCTTACCTTATGCATTCTGAGGTTTGGTTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGTCTGAAGCTCTTACCTTATGCATTCTGAGGTTTGGTTGCTGA  650

seq1  AATTAGGGTCAGAATCTGAACTCTGACAGTCCTAATAAGTCAAGTTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGTCAGAATCTGAACTCTGACAGTCCTAATAAGTCAAGTTTGGC  700

seq1  TGCCCATTCTCCAATAACTCAACTAAACAAATAAAAATGAAAGACTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTCTCCAATAACTCAACTAAACAAATAAAAATGAAAGACTGAAA  750

seq1  ATTATTTATACAATGTGGCTACCTTGGAGAAGAAAGCAAAGAAATCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATACAATGTGGCTACCTTGGAGAAGAAAGCAAAGAAATCTATT  800

seq1  AACAGGTCACAGTCATCTTTGTGGTGTTACCTTGAAGCCTTGTGGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCACAGTCATCTTTGTGGTGTTACCTTGAAGCCTTGTGGACAAT  850

seq1  ATCTATGTATAGGTAAGCAACCTTTGACATGGTGTGGTCCTACCCATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTATAGGTAAGCAACCTTTGACATGGTGTGGTCCTACCCATCAC  900

seq1  CACTAGACTCCAGTCTCTACAAGCTCAGTTCTGGTTGTTATTCTTTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACTCCAGTCTCTACAAGCTCAGTTCTGGTTGTTATTCTTTTTCT  950

seq1  TGGAGAGCAGTTCTGTGCCGTGGTTGGTTAGTGTTCTATC-TCTTCCCTC  999
        |||||||||| |||||||| |||||||||||||||||| |||||||||
seq2  --GAGAGCAGTTTTGTGCCGT-GTTGGTTAGTGTTCTATCTTCTTCCCTC  997

seq1  CACTGTGCATGAGATTCCTGATGGAAAACTCAGTTTCTTTGGGATCCATT  1049
      |||||||||||||||||  ||||| |||||||| ||||||||||||||||
seq2  CACTGTGCATGAGATTCTGGATGG-AAACTCAG-TTCTTTGGGATCCATT  1045

seq1  GTTAAATTTCTAATAACAAAAGGGGAAGACATAGATAAGACATCTTATCT  1099
      ||||||||||| ||||| ||||||||| | |||||  |||| | || || 
seq2  GTTAAATTTCT-ATAAC-AAAGGGGAA-AAATAGAATAGACTTTTTTTC-  1091

seq1  TATAAGATATCTTAGCATATGTTCTCTCCTTTGCGGACAGTTATAATCTG  1149
      ||||||| ||||||||||||||||||||  |||| |||||||| |||   
seq2  TATAAGAAATCTTAGCATATGTTCTCTC--TTGC-GACAGTTA-AAT---  1134

seq1  GTACTGTTTAATTTTTCAAGCCTAGAACAC--------------------  1179
      |||||||||||||||   || |||||||||                    
seq2  GTACTGTTTAATTTT--CAGGCTAGAACACTCCAAGCGCGCAATGAGTAA  1182

seq1  --------------------------------------------------  1179
                                                        
seq2  CACTCTCCACCTTTTATACCCTGCAATTCACGTTATACTTAGCTGGGCCT  1232

seq1  -------  1179
             
seq2  AGAACAC  1239


seq1: chr9_4776212_4777455
seq2: B6Ng01-084M05.g_69_1293 (reverse)

seq1  AGGAAGAACTCAGTTAAGGGGTCA-ATGATACTCTTTGACAAAGCTCT-G  48
      ||||||| ||||| ||||||||||  |  | |||| |||| ||  ||| |
seq2  AGGAAGATCTCAG-TAAGGGGTCATGTATTCCTCTGTGACCAAAGTCTGG  49

seq1  CCTACAATGCTACCTCTAGTAGCTAGCCAAGCAATATATA-AACAGCAAG  97
      | |||||| ||  || | |||||||| || ||||| |||| |||||||||
seq2  CTTACAATTCT--CT-TTGTAGCTAGGCAGGCAAT-TATATAACAGCAAG  95

seq1  TAGAAAAATAAAAATTGTTCATTCTCGAAGTGAATTCAGATTCTGTGTCT  147
      | |  |||||||   ||| | | || ||   | ||||| ||| |||||||
seq2  TGG--AAATAAA---TGTCCTTCCTGGA--GGGATTCA-ATT-TGTGTCT  136

seq1  CTATCTATCATACCCTTGCTTTTCACATCCTGTGATGACCTCAGC-TACA  196
      ||||| |||||  |||||| |||||||||||||||||| |||||| ||||
seq2  CTATC-ATCAT-TCCTTGC-TTTCACATCCTGTGATGA-CTCAGCTTACA  182

seq1  ATGGTCACAGCATCTGACAAAAT-ACTAATTTTGTTTTACTTATCAACTA  245
      ||| ||||||||||||| ||||| ||||| |||| |||||| ||||||||
seq2  ATGATCACAGCATCTGAAAAAATAACTAA-TTTGATTTACTAATCAACTA  231

seq1  TGTATTAACTAATGTAGTACTATTTTTCAACCATGAGGAATTCAATCTCC  295
      |||| |||||||||||||||||||||   |||||||||||||||||||||
seq2  TGTA-TAACTAATGTAGTACTATTTT--CACCATGAGGAATTCAATCTCC  278

seq1  ATTCCATATTATCCTTTCATCAGGGAGCCCTTATTCCAAAAGGGTTAGAA  345
      |||||||||||| ||||||||| |||||||||| ||||||||||||||||
seq2  ATTCCATATTAT-CTTTCATCA-GGAGCCCTTA-TCCAAAAGGGTTAGAA  325

seq1  AACCCAATGGAAACATTTTACAAAAATATAATCTCAAAGTAGCATGGGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATGGAAACATTTTACAAAAATATAATCTCAAAGTAGCATGGGGC  375

seq1  CAGAGCACAGTGGAGGGAC-AACTAGCTGGGTAGTCACAAACAACTCCCT  444
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGAGCACAGTGGAGGGACAAACTAGCTGGGTAGTCACAAACAACTCCCT  425

seq1  ATCATAAGCAACTAGGTGTCCATACCGTATCATCTCTTTCAATGGCTGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGCAACTAGGTGTCCATACCGTATCATCTCTTTCAATGGCTGTA  475

seq1  CTAAAACGTGCAAACAATATATCAGTCTATCTTGGATCGTTAGAAAGTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACGTGCAAACAATATATCAGTCTATCTTGGATCGTTAGAAAGTTA  525

seq1  CAATACTCAATAGGCAAAGAAAATAGTATAATCAATGACATTTTAACAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCAATAGGCAAAGAAAATAGTATAATCAATGACATTTTAACAAC  575

seq1  AAGAACTAAAGTCAGCAAATATCAACAACAATAACTTCATTTCATTAATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAAAGTCAGCAAATATCAACAACAATAACTTCATTTCATTAATG  625

seq1  AGGGTTTTGGCTGGGGTGTAGAACTTACCAAGCATCTTCAAGGTCCACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGGCTGGGGTGTAGAACTTACCAAGCATCTTCAAGGTCCACAA  675

seq1  TACCACACACAAATCCTGCTATTCACATTTTGAAATGGATGATGTGTCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACACAAATCCTGCTATTCACATTTTGAAATGGATGATGTGTCTA  725

seq1  AGCAAAAACATTCCTATGGTAACTGCTAAGTGAGCGAGGCATTCTTTCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACATTCCTATGGTAACTGCTAAGTGAGCGAGGCATTCTTTCAC  775

seq1  TACAGTCTGATACTGGCAAACATATCTTGAAATATCTCTAATAATTAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGATACTGGCAAACATATCTTGAAATATCTCTAATAATTAGAT  825

seq1  GAATTAGAGTCTAATGTATCTTTTCCCTTGTGGGTACAAAAAGATGAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAGTCTAATGTATCTTTTCCCTTGTGGGTACAAAAAGATGAACT  875

seq1  CAATATTTAGTGTGAATGTTAAAAAAAATACTTTCTTTTATTTAGATATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTAGTGTGAATGTTAAAAAAAATACTTTCTTTTATTTAGATATT  925

seq1  ATCAACTAAATCAAGTGCAAACACTCTTTCTAAACAAGTGACAGATTCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAAATCAAGTGCAAACACTCTTTCTAAACAAGTGACAGATTCAG  975

seq1  AAATGTATGAAATAAAATATAAAATATTGTTAAAAAACAGAATTCTTATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGAAATAAAATATAAAATATTGTTAAAAAACAGAATTCTTATA  1025

seq1  GCATTTTAGATTTTTCCATCTTTTGTATATATCATGGTTCTAATAAAATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAGATTTTTCCATCTTTTGTATATATCATGGTTCTAATAAAATT  1075

seq1  GCAACCCAAAACAGCCTACTTTTCCACTCACCAACATATGCTAGATATTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCAAAACAGCCTACTTTTCCACTCACCAACATATGCTAGATATTT  1125

seq1  AAGAAACTGAAACATTTATAAGCAATACTTATCAAAGTAAAGCACAAACA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGAAACATTTATAAGCAATACTTATCAAAGTAAAGCACAAACA  1175

seq1  TAAGTTTAAACCATGAAAAAAGCAAAAGTATGCTTAAGGGTGATGAATTC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAAACCATGAAAAAAGCAAAAGTATGCTTAAGGGTGATGAATTC  1225


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