BAC Information

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BAC

Clone NameB6Ng01-085A19
Chromosome9 (Build37)
Map Location 4,288,107 - 4,426,264
singlet/doubletdoublet
Overlap geneAasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
Upstream geneAlkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236, LOC384912, LOC100039253
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A19.bB6Ng01-085A19.g
ACCDH898828DH898829
length1,0261,090
definitionDH898828|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A19, 5' end.DH898829|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,288,107 - 4,289,140)(4,425,156 - 4,426,264)
sequence
gaattcattctcagaaaatcagtctcatatgcaattagaaagtggttgat
tacacttagtaattactaatgtgattatattattagtattgcaaaagaag
gtacatcttgtctggcacagtggacctgtagcacatagaactcacagttc
agaaagatcattcatgatttttctcacccaccaacctgcatagttctctc
ttgcactcagttctaattggatttctctgaaccctgtctccaaactgtac
tatgtcttgatcttaaaaccatttagttctagtagataacctaaagcaat
ggcaatattatctgaggagtttctgggggctctgtggccaataattcaca
gggaggtatctcataattggtaagttacccatactccagtaaatagccct
tatcacaaatgtacaaaagcaaaaataagtaaaaagaaaaaagaaaaaaa
aagatagcaagggttcattaggagtggaaaaagagggtaatatggaaagg
aaatatggttaaaatacattgtatatctgtataaaattgccacaaaaaat
tttaaaagtctgtatgtcagccatgaaactagaaaggagattatgagaga
acagatattcactgcatctttcttatccctcaaataaatataaaacagaa
tctgaaatcaatatggcactatgtgctgtttaaaaacaatgcataagtct
tccacattttaacatgcctaccccaatattcttggttgttcaatatatat
ataaacacaaaactaagcttagaacagttcttcagtttagaccttggcta
tatgctgagcagatctgaacagtaaatctaccaccagtcaatggacatat
agttgtactggctataatttatgtcaacttgacacaagctatagttatca
gagaatagaacctcacatgagaaatgtctctatagggtcagctgtagaca
accccataggacatttacttaattatgatgatgtgggatgggttattgtg
ggtagggcaccgtggctgtagtctaa

gaattctttacagagcaaggcagaaacacataggctgagtctgcgaagta
aagttacatgtttattatcattggaaaaaatgttatcaatggttcatcat
acatatagaatgtatttaagagaggccagatgatacacacatttaattcc
aacattcaggaagctcctacgccataaataaagatttttttttttttact
tttttggaagtttttggatatcacattctataaaggaatcaaattggtag
ttattctgagacattgaaatatgtgactgactaaaatttggaaagtttct
attaattctaaggaacaaagtcagattaaaatgccatttttcagaactta
cacatgtttagtcattacagtctgcctttgaacaagagtgcaatatgaca
agcttggccatgtaataaactgtcaccttgtgtcctgttgtaaagtaagg
aaaattcacataattaaaaccaagttaccttaaaataatatggccaagca
gacaaatgaatatataaagaaaggtatatgcatcacttgaattgaataat
ttcctaatataaatactgaagaacttgaactagatttttgcatagaaggt
attccaggatctatgacggccacacaacactctttaggatcaggatctat
gatgaccacagaacactttttaggtcatcctaagtttttgtttttgtttt
ttgcaataatgttttatttatatatatacaataaacacattaatagtttg
tgtttattctttttagttattgtcataatttaatatcttctaatcatctg
cttgtctatttctacatctaaaaataagggaatactatagtgaggacctg
aactataatataccaaaatattaacttttaggcctttaaagtggcaatgg
aatttttaatccataaaatcaagtataaatctgaccatacataaatatag
tatctaaagtggatttatttcataaaattattttttaaaaagtgagtgtg
actatgtctgtatgctagactgaaagtcgagcttgaagatcagagtcaag
ctcgcttcacctgcgagttacaacctagaacacatgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4288107_4289140
seq2: B6Ng01-085A19.b_44_1069

seq1  GAATTCATTCTCAGAAAATCAGTCTCATATGCAATTAGAAAGTGGTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAGAAAATCAGTCTCATATGCAATTAGAAAGTGGTTGAT  50

seq1  TACACTTAGTAATTACTAATGTGATTATATTATTAGTATTGCAAAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTAGTAATTACTAATGTGATTATATTATTAGTATTGCAAAAGAAG  100

seq1  GTACATCTTGTCTGGCACAGTGGACCTGTAGCACATAGAACTCACAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTTGTCTGGCACAGTGGACCTGTAGCACATAGAACTCACAGTTC  150

seq1  AGAAAGATCATTCATGATTTTTCTCACCCACCAACCTGCATAGTTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATCATTCATGATTTTTCTCACCCACCAACCTGCATAGTTCTCTC  200

seq1  TTGCACTCAGTTCTAATTGGATTTCTCTGAACCCTGTCTCCAAACTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCAGTTCTAATTGGATTTCTCTGAACCCTGTCTCCAAACTGTAC  250

seq1  TATGTCTTGATCTTAAAACCATTTAGTTCTAGTAGATAACCTAAAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTGATCTTAAAACCATTTAGTTCTAGTAGATAACCTAAAGCAAT  300

seq1  GGCAATATTATCTGAGGAGTTTCTGGGGGCTCTGTGGCCAATAATTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATTATCTGAGGAGTTTCTGGGGGCTCTGTGGCCAATAATTCACA  350

seq1  GGGAGGTATCTCATAATTGGTAAGTTACCCATACTCCAGTAAATAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTATCTCATAATTGGTAAGTTACCCATACTCCAGTAAATAGCCCT  400

seq1  TATCACAAATGTACAAAAGCAAAAATAAGTAAAAAGAAAAAAGAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAATGTACAAAAGCAAAAATAAGTAAAAAGAAAAAAGAAAAAAA  450

seq1  AAGATAGCAAGGGTTCATTAGGAGTGGAAAAAGAGGGTAATATGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCAAGGGTTCATTAGGAGTGGAAAAAGAGGGTAATATGGAAAGG  500

seq1  AAATATGGTTAAAATACATTGTATATCTGTATAAAATTGCCACAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTTAAAATACATTGTATATCTGTATAAAATTGCCACAAAAAAT  550

seq1  TTTAAAAGTCTGTATGTCAGCCATGAAACTAGAAAGGAGATTATGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCTGTATGTCAGCCATGAAACTAGAAAGGAGATTATGAGAGA  600

seq1  ACAGATATTCACTGCATCTTTCTTATCCCTCAAATAAATATAAAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTCACTGCATCTTTCTTATCCCTCAAATAAATATAAAACAGAA  650

seq1  TCTGAAATCAATATGGCACTATGTGCTGTTTAAAAACAATGCATAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCAATATGGCACTATGTGCTGTTTAAAAACAATGCATAAGTCT  700

seq1  TCCACATTTTAACATGCCTACCCCAATATTCTTGGTTGTTCAATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTTTAACATGCCTACCCCAATATTCTTGGTTGTTCAATATATAT  750

seq1  ATAAACACAAAACTAAGCTTAGAACAGTTCTTCAGTTTAGACCTTGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAAAACTAAGCTTAGAACAGTTCTTCAGTTTAGACCTTGGCTA  800

seq1  TATGCTGAGCAGATCTGAACAGTAAATCTACCACCAGTCAATGGACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAGCAGATCTGAACAGTAAATCTACCACCAGTCAATGGACATAT  850

seq1  AGTTGTACTGGCTATAATTTATGTCAACTTGACACAAGCTATAGTTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTGGCTATAATTTATGTCAACTTGACACAAGCTATAGTTATCA  900

seq1  GAGAATAGAACCTCACATGAGAAAATGTCTCTATAGGGTCAGGCTGTAGA  950
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GAGAATAGAACCTCACATGAG-AAATGTCTCTATAGGGTCA-GCTGTAGA  948

seq1  CAACCCCATAGGACATTTACTTAATTAATGATTGATGTGGGATGGGTTAT  1000
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CAACCCCATAGGACATTTACTTAATT-ATGA-TGATGTGGGATGGGTTAT  996

seq1  TGTGGGTAGGGCCACCCGTGGGCTGGTAGTCTAA  1034
      ||||||||||||   |||| |||| |||||||||
seq2  TGTGGGTAGGGC--ACCGT-GGCT-GTAGTCTAA  1026


seq1: chr9_4425156_4426264
seq2: B6Ng01-085A19.g_66_1155 (reverse)

seq1  GTAACATGTG-TCTAGGTTGGTACACTCTGCAGCTGAAGCGAGCTTTGAC  49
      |||||||||| |||||||| ||| |||| |||| |||||||||| |||||
seq2  GTAACATGTGTTCTAGGTT-GTA-ACTC-GCAGGTGAAGCGAGC-TTGAC  46

seq1  TCCTGATCTTCAAGCCTCGACCTCTCAAGTTCTAGCATTACAGACATATG  99
      | |||||||||||| ||||| || |||   ||||||| |||||||||| |
seq2  T-CTGATCTTCAAG-CTCGA-CTTTCA--GTCTAGCA-TACAGACATA-G  89

seq1  TCACCACTTCCACCTTTTTAAAAATAAATTTTAATGAAATATATCCAACT  149
      ||| ||||  ||| |||| ||||||||  ||| |||||||| |||| |||
seq2  TCA-CACT--CACTTTTTAAAAAATAA--TTTTATGAAATAAATCC-ACT  133

seq1  TTAGATACTAATTATTTATGTATGGTCAGATTTATACTTGATTTTATGGA  199
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TTAGATACTA--TATTTATGTATGGTCAGATTTATACTTGATTTTATGGA  181

seq1  TTAAAAATTCCATTGCCACTTTAAAGGCCTAAAAGTTAATATTTTGGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTCCATTGCCACTTTAAAGGCCTAAAAGTTAATATTTTGGTAT  231

seq1  ATTATAGTTCAGGTCCTCACTATAGTATTCCCTTATTTTTAGATGTAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTTCAGGTCCTCACTATAGTATTCCCTTATTTTTAGATGTAGAA  281

seq1  ATAGACAAGCAGATGATTAGAAGATATTAAATTATGACAATAACTAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAGCAGATGATTAGAAGATATTAAATTATGACAATAACTAAAAA  331

seq1  GAATAAACACAAACTATTAATGTGTTTATTGTATATATATAAATAAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACACAAACTATTAATGTGTTTATTGTATATATATAAATAAAACA  381

seq1  TTATTGCAAAAAACAAAAACAAAAACTTAGGATGACCTAAAAAGTGTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAAAAAACAAAAACAAAAACTTAGGATGACCTAAAAAGTGTTCT  431

seq1  GTGGTCATCATAGATCCTGATCCTAAAGAGTGTTGTGTGGCCGTCATAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATCATAGATCCTGATCCTAAAGAGTGTTGTGTGGCCGTCATAGA  481

seq1  TCCTGGAATACCTTCTATGCAAAAATCTAGTTCAAGTTCTTCAGTATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATACCTTCTATGCAAAAATCTAGTTCAAGTTCTTCAGTATTTA  531

seq1  TATTAGGAAATTATTCAATTCAAGTGATGCATATACCTTTCTTTATATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAAATTATTCAATTCAAGTGATGCATATACCTTTCTTTATATAT  581

seq1  TCATTTGTCTGCTTGGCCATATTATTTTAAGGTAACTTGGTTTTAATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTCTGCTTGGCCATATTATTTTAAGGTAACTTGGTTTTAATTAT  631

seq1  GTGAATTTTCCTTACTTTACAACAGGACACAAGGTGACAGTTTATTACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTCCTTACTTTACAACAGGACACAAGGTGACAGTTTATTACAT  681

seq1  GGCCAAGCTTGTCATATTGCACTCTTGTTCAAAGGCAGACTGTAATGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCTTGTCATATTGCACTCTTGTTCAAAGGCAGACTGTAATGACT  731

seq1  AAACATGTGTAAGTTCTGAAAAATGGCATTTTAATCTGACTTTGTTCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTGTAAGTTCTGAAAAATGGCATTTTAATCTGACTTTGTTCCTT  781

seq1  AGAATTAATAGAAACTTTCCAAATTTTAGTCAGTCACATATTTCAATGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATAGAAACTTTCCAAATTTTAGTCAGTCACATATTTCAATGTC  831

seq1  TCAGAATAACTACCAATTTGATTCCTTTATAGAATGTGATATCCAAAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAACTACCAATTTGATTCCTTTATAGAATGTGATATCCAAAAAC  881

seq1  TTCCAAAAAAGTAAAAAAAAAAAAAATCTTTATTTATGGCGTAGGAGCTT  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAAGT-AAAAAAAAAAAAATCTTTATTTATGGCGTAGGAGCTT  930

seq1  CCTGAATGTTGGAATTAAATGTGTGTATCATCTGGCCTCTCTTAAATACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTTGGAATTAAATGTGTGTATCATCTGGCCTCTCTTAAATACA  980

seq1  TTCTATATGTATGATGAACCATTGATAACATTTTTTCCAATGATAATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATGTATGATGAACCATTGATAACATTTTTTCCAATGATAATAAA  1030

seq1  CATGTAACTTTACTTCGCAGACTCAGCCTATGTGTTTCTGCCTTGCTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACTTTACTTCGCAGACTCAGCCTATGTGTTTCTGCCTTGCTCTG  1080

seq1  TAAAGAATTC  1109
      ||||||||||
seq2  TAAAGAATTC  1090


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