BAC Information

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BAC

Clone NameB6Ng01-085E11
Chromosome10 (Build37)9 (Build37)
Map Location 57,679,096 - 57,679,9865,944,633 - 5,944,848
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E11.bB6Ng01-085E11.g
ACCDH898998DH898999
length1,067886
definitionDH898998|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E11, 5' end.DH898999|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,679,096 - 57,679,986)(5,944,633 - 5,944,848)
sequence
gaattctttatgttggctcatggtttgagggattccattatattgtaatg
aaaagcatgatgtcaaggtcatgagatgattggttgtcaaagtaaggctt
tgattgttatgaagaaacaccacaaccaagcaaattataaaagaaaacat
ttaactgttggtttgcttatagttttgaaaggtaggtatgtgacagtcat
ggtggaaagcatagtgggatacagacagacatgccattaaaacaggactg
agaacttctatctgatcctcaagttggagacataagagagaggctgaacc
tggcttgggctcttgaactctcaacacccaccatcagtgcaacatcttct
aaatagggccataactaccaacccttcccaaaatatatctgttaagtagg
gacaaagcattcagatacaagagctcattggatcactctcactcaagcca
ccacactggacacagtgtatctgcaatgaagaagtagagaagaaagtaac
tgttacatatctgtctttttttaattcccattttattcggactaggtcct
catttcttatgattatgccacacacttcatggtgggtcttttatagttaa
ttattttgggaaatgtactcacagagatacctagatgtatttctctcaga
ccattttgaattcagagactttgacagtgaatgtcaacacccaatggcat
ggataaataaagtggtaaaagacattagtttagttgctacctatattgca
ttcttcttctttgatttcttctcctggttggcacatccccagaattctaa
agtttaccagactcttcaaagctctgtcttagctaatgtgaaatttattc
atttgtagtgatacatatcaatacagatagcataaaaaataaacgttttt
cacacaccgcttcatttagtctaggctggaggaaactcactatatagatt
tggcactgaatttttggtctccatttccagcatcccaaggtgcagtcatg
aaaaaaaggcgtctatcccctaaaaacattaatttgcttaattatttatt
gaatgtttccctgcatg
gaattccacataaaaccagagacactgaaacttatagaggagaaagtggg
gaaaagcctcgaagatatgggcacaggggaaaaattcctgaatagaacag
caatggcttgtgctgtaagatcgagaattgacaaatgggacctcataaaa
ctgcaaagcttctgtaaggcaaaagacaccgtcaataagacaaaaaggcc
accaacagattgggaaaggatctttagctatcctaaatcagataggggac
taatatcaaatatatataaagaactcaagaagatggactccagaaaatca
aataaccccattaaaaatggggctcagagctaaacaaagaattctcacct
gagaaatagcaaatggctgagaagcacctgaaaaaatgttcagcatcctt
aatcatcagggaaatgcaaatcaaacaaccctgagattccatctcacacc
agtcagaatggctaagatgaaaagttcaggtgacagctgatgctgtccag
gatgtggagaaagaggaacactcctccattgttggtgggattgcaagctt
gtacaaccactctggaaatcagtctggtggttcctcagaaaattggccat
agtactaccagaggatcccgcaatacctctcctgggcatatatccagaaa
atattccacctggtaagaagcacacatgctccactattttcatagtagcc
ttatttataatagccagaagctggaaagaacccagatgcccctcaaagag
gaacggatacaaaaaataaagtacatttacacaatggagtactactcagc
tattaaaaagaatgactttatgaatccctaggcaaatgtttggacctgga
gtgcatcttcctgagtgaggtaacccaatcacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_57679096_57679986
seq2: B6Ng01-085E11.b_231_1108

seq1  GTGACAGTCATGGTGGAAAGCATAGTGGGATACAGACAGACATGCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTCATGGTGGAAAGCATAGTGGGATACAGACAGACATGCCATTA  50

seq1  AAACAGGACTGAGAACTTCTATCTGATCCTCAAGTTGGAGACATAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGACTGAGAACTTCTATCTGATCCTCAAGTTGGAGACATAAGAGA  100

seq1  GAGGCTGAACCTGGCTTGGGCTCTTGAACTCTCAACACCCACCATCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAACCTGGCTTGGGCTCTTGAACTCTCAACACCCACCATCAGTG  150

seq1  CAACATCTTCTAAATAGGGCCATAACTACCAACCCTTCCCAAAATATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTTCTAAATAGGGCCATAACTACCAACCCTTCCCAAAATATATC  200

seq1  TGTTAAGTAGGGACAAAGCATTCAGATACAAGAGCTCATTGGATCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTAGGGACAAAGCATTCAGATACAAGAGCTCATTGGATCACTCT  250

seq1  CACTCAAGCCACCACACTGGACACAGTGTATCTGCAATGAAGAAGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGCCACCACACTGGACACAGTGTATCTGCAATGAAGAAGTAGAG  300

seq1  AAGAAAGTAACTGTTACATATCTGTCTTTTTTTAATTCCCATTTTATTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAACTGTTACATATCTGTCTTTTTTTAATTCCCATTTTATTCG  350

seq1  GACTAGGTCCTCATTTCTTATGATTATGCCACACACTTCATGGTGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGTCCTCATTTCTTATGATTATGCCACACACTTCATGGTGGGTCT  400

seq1  TTTATAGTTAATTATTTTGGGAAATGTACTCACAGAGATACCTAGATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTAATTATTTTGGGAAATGTACTCACAGAGATACCTAGATGTA  450

seq1  TTTCTCTCAGACCATTTTGAATTCAGAGACTTTGACAGTGAATGTCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCAGACCATTTTGAATTCAGAGACTTTGACAGTGAATGTCAACA  500

seq1  CCCAATGGCATGGATAAATAAAGTGGTAAAAGACATTAGTTTAGTTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGCATGGATAAATAAAGTGGTAAAAGACATTAGTTTAGTTGCTA  550

seq1  CCTATATTGCATTCTTCTTCTTTGATTTCTTCTCCTGGTTGGCACATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTGCATTCTTCTTCTTTGATTTCTTCTCCTGGTTGGCACATCCC  600

seq1  CAGAATTCTAAAGTTTACCAGACTCTTCAAAGCTCTGTCTTAGCTAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTAAAGTTTACCAGACTCTTCAAAGCTCTGTCTTAGCTAATGT  650

seq1  GAAATTTATTCATTTGTAGTGATACATATAAAATACAAGATAAGCAT-AA  699
      |||||||||||||||||||||||||||||  ||||| |||| ||||| ||
seq2  GAAATTTATTCATTTGTAGTGATACATAT-CAATAC-AGAT-AGCATAAA  697

seq1  AAATAAACGTTTTTCACACAACGCTTCATTTAGTCTAGGCTGGAGGAAAA  749
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  AAATAAACGTTTTTCACACACCGCTTCATTTAGTCTAGGCTGGAGG-AAA  746

seq1  CTCACTATATAGATGTGGCACTGAATTTTTGGTCTCCATTTCCAGCATCC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCACTATATAGATTTGGCACTGAATTTTTGGTCTCCATTTCCAGCATCC  796

seq1  CAAGGTGCAGTCATGAAAACAAGGCCCCTTTCTATCTCCTTAAAAAACAT  849
      ||||||||||||||||||| |||||     |||||| |||  ||||||||
seq2  CAAGGTGCAGTCATGAAAAAAAGGC----GTCTATCCCCT--AAAAACAT  840

seq1  TAAATTGTCTTATTTAATTTATGTGAATGTTTTCCCTGCATG  891
      ||| ||| |||| || |||||| |||||| ||||||||||||
seq2  TAATTTG-CTTAATT-ATTTAT-TGAATG-TTTCCCTGCATG  878

seq1: chr9_5944633_5944848
seq2: B6Ng01-085E11.g_741_954 (reverse)

seq1  TTTTGGGATTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCTCTTCA  50
      ||||| |||||||||||||||||||||| |||    || || ||    ||
seq2  TTTTGTGATTGGGTTACCTCACTCAGGAAGATGCACTCCAGGTCCAAACA  50

seq1  TTTGCCTAAAAATTTCATGAATTCATCATTTTTAATAGCTGAGTAGTACT  100
      ||||||||   | ||||| || ||||  ||||||||||||||||||||||
seq2  TTTGCCTAGGGA-TTCATAAAGTCATTCTTTTTAATAGCTGAGTAGTACT  99

seq1  CCATTGTATAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGA  150
      ||||||| |||||||||   ||||| ||||||| ||||||| |||| || 
seq2  CCATTGTGTAAATGTACTTTATTTTTTGTATCCGTTCCTCT-TTGAGGGG  148

seq1  CATCTGGGTTCTTTCCAGCTCCTGGTTATTATAAATAAAACTGCTATGAA  200
      |||||||||||||||||||| |||| ||||||||||||  || |||||||
seq2  CATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTACTATGAA  198

seq1  CATAGTGAAGCATGTG  216
       |||||| ||||||||
seq2  AATAGTGGAGCATGTG  214