BAC Information

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BAC

Clone NameB6Ng01-085F23
Chromosome9 (Build37)
Map Location 119,908,401 - 120,094,152
singlet/doubletdoublet
Overlap geneCmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
Upstream geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
Downstream geneLOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F23.bB6Ng01-085F23.g
ACCDH899062DH899063
length1,2231,165
definitionDH899062|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F23, 5' end.DH899063|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,092,927 - 120,094,152)(119,908,401 - 119,909,562)
sequence
gaattcccaatgcctgccttaggaatccagagtcgcatgaacccaagaca
ggttgtgcttcctgggagaaagtactcagtccctctgtgtgggagccatg
gctggggtcttaggcacgatgggcatctatctcagactatacaaggaaat
cctaataccactgataaaactcaccctggcgcctggggctgggaacccag
gaagggcttgacccaccatggaaagagaaaccgctcacagagtatctcca
ggatgcctggagaacccagttctctccgatccacccgcgcatgttctttt
ccagcaaataagccacgcctcacagccatctctgggaccaagctaaggtc
ccacgatgcccccttctggccatgctaggcttgttgctttatcagaacaa
caagattctgcatttgtaaccagtcgattattaaaaacaaatctttggtg
tagacctcgcctagtcgggttcatggctatgcaggcttcccagtaagcag
ttcaggcgagcgagcgctttctgggcagccctgctgggttgtcagttttc
acaccaccgacttcccactttggcgctctaaccagccttcccttcttcca
gcgtctgggatcacaggctgattctgattccggaatatccctgagatatg
gcaattgtcccccatgggcagccctggtccctcttgtcagagaatcattt
tagaatccaggggcacaaacatctttggttcgtgttccaaatagatttgt
gcaaaaatacacagtgatgaaaggcattctagggacagagcagataaaac
ctctaaaaaccacttccatggcaacgctgagtcaaaagtgtgggcctgtc
atcccagcactcaggtggaccagacaggaagatgatgagttcaaagccag
cctagactgtttatcaagatcctgggttcacagattcttctgggcatttt
ctcttgatctctgttttagtcccttggcctcgactttagtaaagaagttt
attaatctaatttttcagcttcagagcttttatctgattttctcaatgtt
gagaccgcaaagaagctgctgcatcctacaaaccttcaggtcttacgttc
tcaagctgagccactgccccactccacccatagctcataaacttcactct
tcagccatcctaacctgctccaagcatcaggtctcaagtcttaaggaacc
tgttcacttcaacaccaatttct
gaattcccactgaatctagaactgtctctctgctagactagctgaagccc
tcctcctcctccttccctagcactgtgtatgtaagtaattacttacacag
gctgccaaagcctgacttttacatacatggacattacattctctctgtct
ctttctctgtgttgggtctgtctatctgtctgtctgtcttgctccttagc
ctgtctggagtgtttatcccagcctgcttgctctttttctctctctccat
tctccccacccacttctcctattgatcctactctcattcagcttggcgac
agacatggctctggtctccagtctcgctagaggaccctatcccagtcctg
acttcccttccaacctctagttgccagagggcagcgagtgacctcctttc
tttttctagccgaatttagtctctgggatcatgactttgtacacggtcct
cttccctgctggacactgtccatccatcggctctctggtcttggctctgc
acttgaggactgaccctgcaagctgtccttgagtctccttggcttcaggc
ttctcaggggctctgggggagtagactgaggtcagaggtgtgttcccctt
gtagggttgccatgaagaggctccaacagtactcggctcctgccagctgg
cggcatccacacttgtatagcagagttaatccccttccttggatgaagtc
acacacattggatgtctcatttctactccctgaactgagctttctctctc
ttgcctctcttcttttgagacaaggctttctgctatgtagccagcctcag
tttacaactttcctacctttccccctccctgcagctgagactccctcttc
ttcccctttggaagtgtagatgctcaagtccacactcagcagcctgggtt
cagcactgtcctcgcggcttctgaacatttggcttgacttgcaaaggcta
actttttttttttaaatgaaactctcgtcaaatgtctcattcagcatgcc
agctgttttcttccttggagcctctcttgttcaaattccaacacttcccc
gttgtactagccctgagaacctccagcctaataagccacataggaacact
tgtctttcacctgcttctgaaaatttcctcaatctccttcaacctgtaaa
agacagcttcgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120092927_120094152
seq2: B6Ng01-085F23.b_50_1272 (reverse)

seq1  AGAAATTGGTGTTGAAGTG-ACAGGGTCC-TAAGACTTGTAGAACCTGGA  48
      ||||||||||||||||||| ||||| ||| ||||||||| || |||| ||
seq2  AGAAATTGGTGTTGAAGTGAACAGGTTCCTTAAGACTTG-AG-ACCT-GA  47

seq1  TGCTGTGGAGCAAGGTTAGGGATGGCTG-AGAGTGGAAGTGTTATGAGCT  97
      |||| |||||| |||||| ||||||||| ||||| ||||| |||||||||
seq2  TGCT-TGGAGC-AGGTTA-GGATGGCTGAAGAGT-GAAGT-TTATGAGCT  92

seq1  ATGGGTGGAGTGGGGCAGTGG-TCAGCTCTGAG-ACGT-AGACCTGAGGT  144
      ||||||||||||||||||||| |||||| |||| |||| |||||||| | 
seq2  ATGGGTGGAGTGGGGCAGTGGCTCAGCT-TGAGAACGTAAGACCTGAAGG  141

seq1  TTGGTAGGATGGCAGCAGC-TCTTTGCGGTCCTCAACAATTGAGAAAATC  193
      || ||||||| |||||||| |||||||||| |||||| ||||||||||||
seq2  TTTGTAGGAT-GCAGCAGCTTCTTTGCGGT-CTCAAC-ATTGAGAAAATC  188

seq1  AGATAAAAGCTCTGAAGCTGAAAAATTAGATTAATAAACTTCTTTACTAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGCTCTGAAGCTGAAAAATTAGATTAATAAACTTCTTTACTAA  238

seq1  AGTCGAGGCCAAGGGACTAAAACAGAGATCAAGAG-AAATGCCCAGAAGA  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTCGAGGCCAAGGGACTAAAACAGAGATCAAGAGAAAATGCCCAGAAGA  288

seq1  ATCTGTGAA-CCAGGATCTTGATAAACAGTCTAGGCTGGCTTTGAACTCA  341
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAACCCAGGATCTTGATAAACAGTCTAGGCTGGCTTTGAACTCA  338

seq1  TCATCTTCCTGTCTGGTCCACCTGAGTGCTGGGATGACAGGCCCACACTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCCTGTCTGGTCCACCTGAGTGCTGGGATGACAGGCCCACACTT  388

seq1  TTGACTCAGCGTTGCCATGGAAGTGGTTTTTAGAGGTTTTATCTGCTCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAGCGTTGCCATGGAAGTGGTTTTTAGAGGTTTTATCTGCTCTG  438

seq1  TCCCTAGAATGCCTTTCATCACTGTGTATTTTTGCACAAATCTATTTGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGAATGCCTTTCATCACTGTGTATTTTTGCACAAATCTATTTGGA  488

seq1  ACACGAACCAAAGATGTTTGTGCCCCTGGATTCTAAAATGATTCTCTGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAACCAAAGATGTTTGTGCCCCTGGATTCTAAAATGATTCTCTGAC  538

seq1  AAGAGGGACCAGGGCTGCCCATGGGGGACAATTGCCATATCTCAGGGATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGACCAGGGCTGCCCATGGGGGACAATTGCCATATCTCAGGGATA  588

seq1  TTCCGGAATCAGAATCAGCCTGTGATCCCAGACGCTGGAAGAAGGGAAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGAATCAGAATCAGCCTGTGATCCCAGACGCTGGAAGAAGGGAAGG  638

seq1  CTGGTTAGAGCGCCAAAGTGGGAAGTCGGTGGTGTGAAAACTGACAACCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGAGCGCCAAAGTGGGAAGTCGGTGGTGTGAAAACTGACAACCC  688

seq1  AGCAGGGCTGCCCAGAAAGCGCTCGCTCGCCTGAACTGCTTACTGGGAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTGCCCAGAAAGCGCTCGCTCGCCTGAACTGCTTACTGGGAAG  738

seq1  CCTGCATAGCCATGAACCCGACTAGGCGAGGTCTACACCAAAGATTTGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAGCCATGAACCCGACTAGGCGAGGTCTACACCAAAGATTTGTT  788

seq1  TTTAATAATCGACTGGTTACAAATGCAGAATCTTGTTGTTCTGATAAAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATCGACTGGTTACAAATGCAGAATCTTGTTGTTCTGATAAAGC  838

seq1  AACAAGCCTAGCATGGCCAGAAGGGGGCATCGTGGGACCTTAGCTTGGTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCTAGCATGGCCAGAAGGGGGCATCGTGGGACCTTAGCTTGGTC  888

seq1  CCAGAGATGGCTGTGAGGCGTGGCTTATTTGCTGGAAAAGAACATGCGCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGGCTGTGAGGCGTGGCTTATTTGCTGGAAAAGAACATGCGCG  938

seq1  GGTGGATCGGAGAGAACTGGGTTCTCCAGGCATCCTGGAGATACTCTGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCGGAGAGAACTGGGTTCTCCAGGCATCCTGGAGATACTCTGTG  988

seq1  AGCGGTTTCTCTTTCCATGGTGGGTCAAGCCCTTCCTGGGTTCCCAGCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTTTCTCTTTCCATGGTGGGTCAAGCCCTTCCTGGGTTCCCAGCCC  1038

seq1  CAGGCGCCAGGGTGAGTTTTATCAGTGGTATTAGGATTTCCTTGTATAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCCAGGGTGAGTTTTATCAGTGGTATTAGGATTTCCTTGTATAGT  1088

seq1  CTGAGATAGATGCCCATCGTGCCTAAGACCCCAGCCATGGCTCCCACACA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAGATGCCCATCGTGCCTAAGACCCCAGCCATGGCTCCCACACA  1138

seq1  GAGGGACTGAGTACTTTCTCCCAGGAAGCACAACCTGTCTTGGGTTCATG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTGAGTACTTTCTCCCAGGAAGCACAACCTGTCTTGGGTTCATG  1188

seq1  CGACTCTGGATTCCTAAGGCAGGCATTGGGAATTC  1226
      |||||||||||||||||||||||||||||||||||
seq2  CGACTCTGGATTCCTAAGGCAGGCATTGGGAATTC  1223

seq1: chr9_119908401_119909562
seq2: B6Ng01-085F23.g_72_1236

seq1  GAATTCCCACTGAATCTAGAACTGTCTCTCTGCTAGACTAGCTGAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGAATCTAGAACTGTCTCTCTGCTAGACTAGCTGAAGCCC  50

seq1  TCCTCCTCCTCCTTCCCTAGCACTGTGTATGTAAGTAATTACTTACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTTCCCTAGCACTGTGTATGTAAGTAATTACTTACACAG  100

seq1  GCTGCCAAAGCCTGACTTTTACATACATGGACATTACATTCTCTCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAAGCCTGACTTTTACATACATGGACATTACATTCTCTCTGTCT  150

seq1  CTTTCTCTGTGTTGGGTCTGTCTATCTGTCTGTCTGTCTTGCTCCTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGTGTTGGGTCTGTCTATCTGTCTGTCTGTCTTGCTCCTTAGC  200

seq1  CTGTCTGGAGTGTTTATCCCAGCCTGCTTGCTCTTTTTCTCTCTCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGAGTGTTTATCCCAGCCTGCTTGCTCTTTTTCTCTCTCTCCAT  250

seq1  TCTCCCCACCCACTTCTCCTATTGATCCTACTCTCATTCAGCTTGGCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCACCCACTTCTCCTATTGATCCTACTCTCATTCAGCTTGGCGAC  300

seq1  AGACATGGCTCTGGTCTCCAGTCTCGCTAGAGGACCCTATCCCAGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGCTCTGGTCTCCAGTCTCGCTAGAGGACCCTATCCCAGTCCTG  350

seq1  ACTTCCCTTCCAACCTCTAGTTGCCAGAGGGCAGCGAGTGACCTCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTTCCAACCTCTAGTTGCCAGAGGGCAGCGAGTGACCTCCTTTC  400

seq1  TTTTTCTAGCCGAATTTAGTCTCTGGGATCATGACTTTGTACACGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGCCGAATTTAGTCTCTGGGATCATGACTTTGTACACGGTCCT  450

seq1  CTTCCCTGCTGGACACTGTCCATCCATCGGCTCTCTGGTCTTGGCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGCTGGACACTGTCCATCCATCGGCTCTCTGGTCTTGGCTCTGC  500

seq1  ACTTGAGGACTGACCCTGCAAGCTGTCCTTGAGTCTCCTTGGCTTCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGACTGACCCTGCAAGCTGTCCTTGAGTCTCCTTGGCTTCAGGC  550

seq1  TTCTCAGGGGCTCTGGGGGAGTAGACTGAGGTCAGAGGTGTGTTCCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGGCTCTGGGGGAGTAGACTGAGGTCAGAGGTGTGTTCCCCTT  600

seq1  GTAGGGTTGCCATGAAGAGGCTCCAACAGTACTCGGCTCCTGCCAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTGCCATGAAGAGGCTCCAACAGTACTCGGCTCCTGCCAGCTGG  650

seq1  CGGCATCCACACTTGTATAGCAGAGTTAATCCCCTTCCTTGGATGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCCACACTTGTATAGCAGAGTTAATCCCCTTCCTTGGATGAAGTC  700

seq1  ACACACATTGGATGTCTCATTTCTACTCCCTGAACTGAGCTTTCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTGGATGTCTCATTTCTACTCCCTGAACTGAGCTTTCTCTCTC  750

seq1  TTGCCTCTCTTCTTTTGAGACAAGGC-TTCTGCTATGTAGCCAGCCTCAG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCCTCTCTTCTTTTGAGACAAGGCTTTCTGCTATGTAGCCAGCCTCAG  800

seq1  -TTACAACTTTCCTACCTTTCCCCCTCCCTGCAGCTGAGACT-CCTCTTC  847
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTACAACTTTCCTACCTTTCCCCCTCCCTGCAGCTGAGACTCCCTCTTC  850

seq1  TTCCCCTTTGGAAGTGTAGATGCTCAAGTCCACACTCAGCAGCCTGGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCCCTTTGGAAGTGTAGATGCTCAAGTCCACACTCAGCAGCCT-GGGT  899

seq1  CCAGCACTGTCCTCGCGGCTTCTGAACATTTGGCTTGACTTGCAAAGGCT  947
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTGTCCTCGCGGCTTCTGAACATTTGGCTTGACTTGCAAAGGCT  949

seq1  AAC-TTTTTTTTTTAAATGAAACTCTCGTCAAATGTCTCATTCAAGCATG  996
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTTTTTTTTTTTAAATGAAACTCTCGTCAAATGTCTCATTC-AGCATG  998

seq1  CCAGCTGTTT--CTCCCTGGAGCCTTCTCTTGTTCAAATTCCAAACACTT  1044
      ||||||||||   ||| ||||||| ||||||||||||||||| |||||||
seq2  CCAGCTGTTTTCTTCCTTGGAGCC-TCTCTTGTTCAAATTCC-AACACTT  1046

seq1  CCCCGTTTGTACTAG-CCTGAGA--CCCCAGCCTTAATAAG-CAGCTAGG  1090
      ||||| ||||||||| |||||||  | |||||| ||||||| ||  ||||
seq2  CCCCG-TTGTACTAGCCCTGAGAACCTCCAGCC-TAATAAGCCACATAGG  1094

seq1  ACCACTGGTCCTTCACCTAGTCTCAGAAAA-ATCCTCATTCTCTTCCAAC  1139
      | |||| ||| ||||||| |  || |||||  |||||| |||| | ||||
seq2  AACACTTGTCTTTCACCT-GCTTCTGAAAATTTCCTCAATCTCCTTCAAC  1143

seq1  CTGTAAAAGACAGGCTTCGAGCT  1162
      |||||||||||| ||||||||||
seq2  CTGTAAAAGACA-GCTTCGAGCT  1165