BAC Information

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BAC

Clone NameB6Ng01-085H01
Chromosome9 (Build37)
Map Location 64,735,831 - 64,902,876
singlet/doubletdoublet
Overlap geneAI115600, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, F730015K02Rik
Downstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H01.bB6Ng01-085H01.g
ACCDH899110DH899111
length1,1021,122
definitionDH899110|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H01, 5' end.DH899111|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,901,766 - 64,902,876)(64,735,831 - 64,736,951)
sequence
gaattccatctgcctgagtatcctgagaaaatacacagccaagttcaaga
tcagaaatgcatacatttatccagatgtctgttgtttcttcatagatgat
cagtggtgtcacagagtcaggaactgactctataagtctctgtctgtcca
tggcatcatcttctactgggatgaataactcaggggagatcagaactatc
tgcaggtgagtctgggaacggtctagtaggatggaccaggcactgttcaa
aggaacgaggagaaatcaagactacagcaagctctcagaaaatgaataac
cttctgttcccccccctcagtacctatcaattctttttttttttttaaga
cagggtctttaaaaaattattcctataatcacaatggcatgtttatgctt
acaaatctgtgcattcactgagttcaggggaaaggcctgagcagacagaa
cacagtgccaatttacatgggaaggcaaagcctacagcactgacattcta
aactctggatctaacttagttgtaatgaagagacaatttaacatacgcac
tgttttccctctggagtccatccggctctggcaatatattcaactccctc
aaacagaatctcgaaaggttgaaccagttctttatctatgacatctataa
tctagtaggaagaaaaaggaatatagttatagaagacagaaaagaacaca
ctcactagtctagtctccttaggtcacctttttagacacagtacttgaaa
ggtttgaagtggacagatctgatgcacacccaacacggaagataagccac
tgctttcaatgactgagtaataactgggtcaaagaacaaaactgtctgca
gagggaaatgtgtttgtgtggtgatggatgtttgcagaggccagatgatt
tgtttataccttcagattgttgtttgtttgtttgttttgagacactgtct
ttcattgacttgaaatcaatagcgggctaagctggctgtcagagagtcca
ggatctgtcttgtcttcacagcttcgtgctgggattacagcaatactaca
acagcaagctttttttatgttagttctgggatttacctcagtttctttat
at
gaattcactctgtagaccaggctggcttgcttctgcctcccaagtgctgg
gctgggattaaaggcatgcaccataatccccagcaaatatctttaatcta
aagcaacatcattactggcggtcttgtttgaaagaatattattctgtgat
ccctttactaccggcaacatatgcaaaaacactagctaagtatgtatatg
aacactaattttaaaaagtttgcaggaattgctttggaatttgatatcaa
ggtcattcaaatgtgtttcctcttttatttccagatatattgatattgag
tctgcatttataaaaataacagtatttatttgttgagtatattttataat
ctgatagagaattatagctaaattctaagttaatacgttatttggtcata
attcttctagctagcagcaatctgtttgtggttgaaaggcaatttcttct
tctctgaaacagctataatggatttccagttctcaggaacaatttatttg
agaggcctgaaggatttctacaagcacgaaagaacaaactaccttcaaaa
ccaagcagtcctggtagtccttctcccatgttcagaagaacaaaacaggt
gctttgaaactctgtgttcctcatgtaatcaaacatcaggccagcagtgc
atctgatgttctgccttgcgtggcagcccttgctgcacagctgtagcctt
agcagatgacaaggtgcttggtgctctaaatgtagtttgaagtaatcaga
cctaaaactttatttttatatatcatatgatacaaactcaaaaggagatt
ttaaaatatattatttgtcaacgagttttacaaaacatgtgacttttctg
tgttcaccattcagctaataaagatgctatccttgggactttcttcctaa
ggaaatcaagtcagcccataggatcgcaaaagaggttattcttctatccc
tcagatgtggtctcggtgtcctgctgcgttcactgtatggattgtgttta
tttgtctcccagcttacgtgaagtttgtcacttcaaggtcaggctctgaa
cctgcatacgatgtgcttaaaatgcagcttgaagaagatggatcacctga
tgaggtatatgtgtgaatccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64901766_64902876
seq2: B6Ng01-085H01.b_46_1147 (reverse)

seq1  ATATAAAGGGACCTGAGTTAAATCCCAGAACTCACAT-AAAATAGCTTGC  49
      ||||||| | | ||||| |||||||||||||| |||| |||| |||||||
seq2  ATATAAA-GAAACTGAGGTAAATCCCAGAACTAACATAAAAAAAGCTTGC  49

seq1  TGTTGTAGTATGTGCTTGTAATCCCAGCACTGAGGCTGTGAAGAC-AGAC  98
      ||||||||||| ||| |||||||||||||| || ||||||||||| ||||
seq2  TGTTGTAGTAT-TGC-TGTAATCCCAGCAC-GAAGCTGTGAAGACAAGAC  96

seq1  AGATCCCTGGGGCTCTCTGGACAGCCAGCTTAGCCCGCTTATTGATTTCC  148
      ||||||   || |||||| ||||||||||||||||||| ||||||||| |
seq2  AGATCC--TGGACTCTCT-GACAGCCAGCTTAGCCCGC-TATTGATTT-C  141

seq1  AGGTCAATGAAAGACAGTGTCTCAAAACAAACAAACAAACAAACAATCCT  198
      | |||||||||||||||||||||||||||||||||||||| |||||||  
seq2  AAGTCAATGAAAGACAGTGTCTCAAAACAAACAAACAAAC-AACAATCTG  190

seq1  GAGGTATAAACAAATCATCTGGCCTCTGCATACATCCATCACCACACAAA  248
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGTATAAACAAATCATCTGGCCTCTGCAAACATCCATCACCACACAAA  240

seq1  CACATTTCCCTCTTGCAGACAGTTTTGTTCTTTGACCCAGTTATTACTCA  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCCTC-TGCAGACAGTTTTGTTCTTTGACCCAGTTATTACTCA  289

seq1  GTCATTGAAAGCAGTGGCTTATCTTCCGTGTTGGGTGTGCATCAGATCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAAAGCAGTGGCTTATCTTCCGTGTTGGGTGTGCATCAGATCTG  339

seq1  TCCACTTCAAACCTTTCAAGTACTGTGTCTAAAAAGGTGACCTAAGGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCAAACCTTTCAAGTACTGTGTCTAAAAAGGTGACCTAAGGAGA  389

seq1  CTAGACTAGTGAGTGTGTTCTTTTCTGTCTTCTATAACTATATTCCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGTGAGTGTGTTCTTTTCTGTCTTCTATAACTATATTCCTTTT  439

seq1  TCTTCCTACTAGATTATAGATGTCATAGATAAAGAACTGGTTCAACCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTACTAGATTATAGATGTCATAGATAAAGAACTGGTTCAACCTTT  489

seq1  CGAGATTCTGTTTGAGGGAGTTGAATATATTGCCAGAGCCGGATGGACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATTCTGTTTGAGGGAGTTGAATATATTGCCAGAGCCGGATGGACTC  539

seq1  CAGAGGGAAAACAGTGCGTATGTTAAATTGTCTCTTCATTACAACTAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAAAACAGTGCGTATGTTAAATTGTCTCTTCATTACAACTAAGT  589

seq1  TAGATCCAGAGTTTAGAATGTCAGTGCTGTAGGCTTTGCCTTCCCATGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAGAGTTTAGAATGTCAGTGCTGTAGGCTTTGCCTTCCCATGTA  639

seq1  AATTGGCACTGTGTTCTGTCTGCTCAGGCCTTTCCCCTGAACTCAGTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCACTGTGTTCTGTCTGCTCAGGCCTTTCCCCTGAACTCAGTGAA  689

seq1  TGCACAGATTTGTAAGCATAAACATGCCATTGTGATTATAGGAATAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATTTGTAAGCATAAACATGCCATTGTGATTATAGGAATAATTT  739

seq1  TTTAAAGACCCTGTCTTAAAAAAAAAAAAAGAATTGATAGGTACTGAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACCCTGTCTTAAAAAAAAAAAAAGAATTGATAGGTACTGAGGG  789

seq1  GGGGGAACAGAAGGTTATTCATTTTCTGAGAGCTTGCTGTAGTCTTGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAACAGAAGGTTATTCATTTTCTGAGAGCTTGCTGTAGTCTTGATT  839

seq1  TCTCCTCGTTCCTTTGAACAGTGCCTGGTCCATCCTACTAGACCGTTCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCGTTCCTTTGAACAGTGCCTGGTCCATCCTACTAGACCGTTCCC  889

seq1  AGACTCACCTGCAGATAGTTCTGATCTCCCCTGAGTTATTCATCCCAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACCTGCAGATAGTTCTGATCTCCCCTGAGTTATTCATCCCAGTA  939

seq1  GAAGATGATGCCATGGACAGACAGAGACTTATAGAGTCAGTTCCTGACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATGCCATGGACAGACAGAGACTTATAGAGTCAGTTCCTGACTC  989

seq1  TGTGACACCACTGATCATCTATGAAGAAACAACAGACATCTGGATAAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACCACTGATCATCTATGAAGAAACAACAGACATCTGGATAAATG  1039

seq1  TATGCATTTCTGATCTTGAACTTGGCTGTGTATTTTCTCAGGATACTCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTCTGATCTTGAACTTGGCTGTGTATTTTCTCAGGATACTCAG  1089

seq1  GCAGATGGAATTC  1111
      |||||||||||||
seq2  GCAGATGGAATTC  1102

seq1: chr9_64735831_64736951
seq2: B6Ng01-085H01.g_67_1188

seq1  GAATTCACTCTGTAGACCAGGCTGGCTTGCTTCTGCCTCCCAAGTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCTTGCTTCTGCCTCCCAAGTGCTGG  50

seq1  GCTGGGATTAAAGGCATGCACCATAATCCCCAGCAAATATCTTTAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGCACCATAATCCCCAGCAAATATCTTTAATCTA  100

seq1  AAGCAACATCATTACTGGCGGTCTTGTTTGAAAGAATATTATTCTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATCATTACTGGCGGTCTTGTTTGAAAGAATATTATTCTGTGAT  150

seq1  CCCTTTACTACCGGCAACATATGCAAAAACACTAGCTAAGTATGTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTACCGGCAACATATGCAAAAACACTAGCTAAGTATGTATATG  200

seq1  AACACTAATTTTAAAAAGTTTGCAGGAATTGCTTTGGAATTTGATATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATTTTAAAAAGTTTGCAGGAATTGCTTTGGAATTTGATATCAA  250

seq1  GGTCATTCAAATGTGTTTCCTCTTTTATTTCCAGATATATTGATATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCAAATGTGTTTCCTCTTTTATTTCCAGATATATTGATATTGAG  300

seq1  TCTGCATTTATAAAAATAACAGTATTTATTTGTTGAGTATATTTTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTATAAAAATAACAGTATTTATTTGTTGAGTATATTTTATAAT  350

seq1  CTGATAGAGAATTATAGCTAAATTCTAAGTTAATACGTTATTTGGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAGAATTATAGCTAAATTCTAAGTTAATACGTTATTTGGTCATA  400

seq1  ATTCTTCTAGCTAGCAGCAATCTGTTTGTGGTTGAAAGGCAATTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTAGCTAGCAGCAATCTGTTTGTGGTTGAAAGGCAATTTCTTCT  450

seq1  TCTCTGAAACAGCTATAATGGATTTCCAGTTCTCAGGAACAATTTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAACAGCTATAATGGATTTCCAGTTCTCAGGAACAATTTATTTG  500

seq1  AGAGGCCTGAAGGATTTCTACAAGCACGAAAGAACAAACTACCTTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTGAAGGATTTCTACAAGCACGAAAGAACAAACTACCTTCAAAA  550

seq1  CCAAGCAGTCCTGGTAGTCCTTCTCCCATGTTCAGAAGAACAAAACAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGTCCTGGTAGTCCTTCTCCCATGTTCAGAAGAACAAAACAGGT  600

seq1  GCTTTGAAACTCTGTGTTCCTCATGTAATCAAACATCAGGCCAGCAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAACTCTGTGTTCCTCATGTAATCAAACATCAGGCCAGCAGTGC  650

seq1  ATCTGATGTTCTGCCTTGCGTGGCAGCCCTTGCTGCACAGCTGTAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGTTCTGCCTTGCGTGGCAGCCCTTGCTGCACAGCTGTAGCCTT  700

seq1  AGCAGATGACAAGGTGCTTGGTGCTCTAAATGTAGTTTGAAGTAATCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGACAAGGTGCTTGGTGCTCTAAATGTAGTTTGAAGTAATCAGA  750

seq1  CCTAAAACTTTA-TTTTATATATCATATGATACAAACTCAAAAGGAGATT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTTTATTTTTATATATCATATGATACAAACTCAAAAGGAGATT  800

seq1  TTAAAATATATTAATTGTCAACGAGTTTTACAAAACATGTGAC-TTTCTG  848
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  TTAAAATATATTATTTGTCAACGAGTTTTACAAAACATGTGACTTTTCTG  850

seq1  TGTTCACCATTCAGCTTAATAAAGATGCTA-CCTT-GGAC-TTCTTCCT-  894
      ||||||||||||||| |||||||||||||| |||| |||| |||||||| 
seq2  TGTTCACCATTCAGC-TAATAAAGATGCTATCCTTGGGACTTTCTTCCTA  899

seq1  AGGAAATCAAGTCAGCCCATAAGATCGC-AAAGAGG-TATTCTTCTATCC  942
      ||||||||||||||||||||| |||||| ||||||| |||||||||||||
seq2  AGGAAATCAAGTCAGCCCATAGGATCGCAAAAGAGGTTATTCTTCTATCC  949

seq1  CTCAGATGTGGTCTCGGTGT-CTGCTGCG-TCACTGTTATGGATTGTGGT  990
      |||||||||||||||||||| |||||||| |||||| |||||||||| ||
seq2  CTCAGATGTGGTCTCGGTGTCCTGCTGCGTTCACTG-TATGGATTGT-GT  997

seq1  TTATTTGTCTCCCAGCTTACGTGAAGGTTTGTCACTCCAAAGTCAGGGCT  1040
      ||||||||||||||||||||||||| |||||||||| ||| |||| ||||
seq2  TTATTTGTCTCCCAGCTTACGTGAA-GTTTGTCACTTCAAGGTCA-GGCT  1045

seq1  CTGAAAACTGCATACGATGTGCTTAAAAAAATGCAGC-TGAAGAAGATGG  1089
      ||| || |||||||||||||||||   |||||||||| ||||||||||||
seq2  CTG-AACCTGCATACGATGTGCTT---AAAATGCAGCTTGAAGAAGATGG  1091

seq1  ATCCACCTGATGAGGTAATAGTGTGATTCCAA  1121
      || ||||||||||||||   |||||| |||||
seq2  AT-CACCTGATGAGGTATATGTGTGAATCCAA  1122