BAC Information

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BAC

Clone NameB6Ng01-085I10
Chromosome9 (Build37)
Map Location 28,985,661 - 29,145,746
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I10.bB6Ng01-085I10.g
ACCDH899176DH899177
length1,1071,106
definitionDH899176|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I10, 5' end.DH899177|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,144,631 - 29,145,746)(28,985,661 - 28,986,776)
sequence
gaattctctcttgtgatttatgtcactcaaattggtttgtgatgatttaa
ttatgtggttaaaaaaaaatccaacaacaaaaaattgtaaaagccaatag
gtagctaccccagccccagttttcaaggttctctgaatatggactgagat
ttcacatcatttcagaaaacaatgggaaaccacctcaataatttacatat
ttactttgcaaatatctgttgaaccaatgcaatgttaccaagcagctttg
tgtgttctgggtatattaatagaaaggggatttaagaggttcttgagata
gtctgtctgctgctcggaaaataggaagataagtacaatgcagagtgagc
ctttttaacagaatgaaagcaagcattgaagagacagtagaacaacaaag
agtgagggctaatggacacagccaatgttagtctgtgtggtccacgttca
cgtcagattcccaacccttttggcaggtgtcctttacacaattggtcctt
ccttccattacttcacagagatgtagtcattctggatgtatgtttggtgt
gtgttataataaaatgacttaatcctttaacaacttcattgatttttctt
gggatttatctgttttgatcaatggaaatgagaagacatttggcaaatat
ggattaaatcttaagagtgagatgggcaagccagatgtagtgccacatgc
ctccaatctcagcactcaggaggcagagacagggacattgctatgaattc
gaggccagcctttttttccatagtaagcttcagaccaactccacatggta
cgatcctgtctcattcccctcccaaaagatgaccaaatactggatagttt
gacctactaacactatatttctttttcactgcgatttgataagccacttg
ataagagtggagaggaagatttagagtgtggtcccatgtctagcctgcct
gtgtttaagtacaaaatacgttttcctcctagagctcctgtgtatctctc
tgggactccatagctttctagatcgctgggaagacagcacagctcctgag
tctcccccccctcctctttttctctctcacttcaatcactgggtggagag
ttcttga
gaattcaaaggggacattcaatagcatgatgacaaacaggtaaatagtcc
tccacaggtgaggccttctcctaagggctttagtttacctacatataaat
gtaatcttcaccccactcctcacatttaccctatttcgcaagaaaaagcc
ccaggggtgcagtaatatttgaggcctttctctccgtcagaaaacagaca
atgtagcccaaagctgttgttcagtaactagaaattcatctacttgttaa
atgttgtctgctgcctcaggaccattctgattttgaaaagggctgaacac
cagacctgtgatatgagaagcagagagatgagaacctggagaaatgccac
aaagcccacaaaaacaacgggaggaccccaaacaaacattaagcctacaa
agtataaacaagaagagaacataggaagaagagactctgaatccagtctt
atagcagaggcatggggaagccaaaactggattggatggagaagggagca
agcaccctatacttataatgggtgtgtggaagggatggttgcgataagat
cctgggtactgtttcttggctttgtcatcatggaagacgggtctatggca
tggtatatatgtacagcaaccgaagaacattaaaattcttgtcttaaaat
aaaacaaacttgtagttgtatgaaacattttaaaaatgctaagaggagga
aaagccaagggaaacaataattagacaataattttgtacaaaacataata
ctggaataggagaaaactggttcactcaaaaagtaaattgatgaaacgtt
ccgtgtctagcttcaagatgaccaccagagaggacttgctggggagaaca
gccaacctagcttggattaggatgtggaaaaaaatcagtaatgttgatat
tcccagccacccactcaggcctcccagcccagccccacccaccttgtaca
ttgagtgaccctgtaggtctagggtggttgtcgtctgtaccgacagtata
gggccctcatcgtaacatccacatttctgatctcaatgctgtactgggct
ggtgttactcagaaggaacctcactgaggattctaggcatccacttgtca
tttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29144631_29145746
seq2: B6Ng01-085I10.b_46_1152 (reverse)

seq1  TCAAGACCACTCCACCCAGTGATTGGAGTGGGAGAGAAAAAGA-GAGGGG  49
      |||||| | |||||||||||||||| |||| |||||||||||| ||||||
seq2  TCAAGAACTCTCCACCCAGTGATTGAAGTGAGAGAGAAAAAGAGGAGGGG  50

seq1  GGGGAGACTTCAGGGAGCTTGTGCTGTC-TCACAGCGATCTAGAAAGCTA  98
      |||||||| ||| ||||| ||||||||| || ||||||||||||||||||
seq2  GGGGAGAC-TCA-GGAGC-TGTGCTGTCTTCCCAGCGATCTAGAAAGCTA  97

seq1  TGGAGTCCCAGAGAGATACACAGGAAGCTCTTAGGAGGAAAACGTATTTT  148
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TGGAGTCCCAGAGAGATACACAGG-AGCTC-TAGGAGGAAAACGTATTTT  145

seq1  GTACTTAAAACACAGGCAGGCTAGACATGGGACCACCACTCTAAATCTTC  198
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACTT-AAACACAGGCAGGCTAGACATGGGACCA-CACTCTAAATCTTC  193

seq1  CTTCTCCCACTCTTATCAAGTGGCCTTATCAAATTCGCAGTGAAAAAGAA  248
      | ||| ||||||||||||||||| ||||||||| ||||||||||||||||
seq2  C-TCT-CCACTCTTATCAAGTGG-CTTATCAAA-TCGCAGTGAAAAAGAA  239

seq1  ATATAGTGTTAGTAGGTCAAACTATCCAGTATTTGGTCATCTTTTGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGTTAGTAGGTCAAACTATCCAGTATTTGGTCATCTTTTGGGAG  289

seq1  GGGAATGAGACAGGATCGTACCATGTGGAGTTGGTCTGAAGCTTACTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAGACAGGATCGTACCATGTGGAGTTGGTCTGAAGCTTACTATG  339

seq1  GAAAAAAAGGCTGGCCTCGAATTCATAGCAATGTCCCTGTCTCTGCCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGGCTGGCCTCGAATTCATAGCAATGTCCCTGTCTCTGCCTCC  389

seq1  TGAGTGCTGAGATTGGAGGCATGTGGCACTACATCTGGCTTGCCCATCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGAGATTGGAGGCATGTGGCACTACATCTGGCTTGCCCATCTC  439

seq1  ACTCTTAAGATTTAATCCATATTTGCCAAATGTCTTCTCATTTCCATTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAGATTTAATCCATATTTGCCAAATGTCTTCTCATTTCCATTGA  489

seq1  TCAAAACAGATAAATCCCAAGAAAAATCAATGAAGTTGTTAAAGGATTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGATAAATCCCAAGAAAAATCAATGAAGTTGTTAAAGGATTAA  539

seq1  GTCATTTTATTATAACACACACCAAACATACATCCAGAATGACTACATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTATTATAACACACACCAAACATACATCCAGAATGACTACATCT  589

seq1  CTGTGAAGTAATGGAAGGAAGGACCAATTGTGTAAAGGACACCTGCCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGTAATGGAAGGAAGGACCAATTGTGTAAAGGACACCTGCCAAA  639

seq1  AGGGTTGGGAATCTGACGTGAACGTGGACCACACAGACTAACATTGGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGGAATCTGACGTGAACGTGGACCACACAGACTAACATTGGCTG  689

seq1  TGTCCATTAGCCCTCACTCTTTGTTGTTCTACTGTCTCTTCAATGCTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTAGCCCTCACTCTTTGTTGTTCTACTGTCTCTTCAATGCTTGC  739

seq1  TTTCATTCTGTTAAAAAGGCTCACTCTGCATTGTACTTATCTTCCTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTGTTAAAAAGGCTCACTCTGCATTGTACTTATCTTCCTATTT  789

seq1  TCCGAGCAGCAGACAGACTATCTCAAGAACCTCTTAAATCCCCTTTCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGCAGCAGACAGACTATCTCAAGAACCTCTTAAATCCCCTTTCTAT  839

seq1  TAATATACCCAGAACACACAAAGCTGCTTGGTAACATTGCATTGGTTCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACCCAGAACACACAAAGCTGCTTGGTAACATTGCATTGGTTCAA  889

seq1  CAGATATTTGCAAAGTAAATATGTAAATTATTGAGGTGGTTTCCCATTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTGCAAAGTAAATATGTAAATTATTGAGGTGGTTTCCCATTGT  939

seq1  TTTCTGAAATGATGTGAAATCTCAGTCCATATTCAGAGAACCTTGAAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAATGATGTGAAATCTCAGTCCATATTCAGAGAACCTTGAAAAC  989

seq1  TGGGGCTGGGGTAGCTACCTATTGGCTTTTACAATTTTTTGTTGTTGGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGGGTAGCTACCTATTGGCTTTTACAATTTTTTGTTGTTGGAT  1039

seq1  TTTTTTTTAACCACATAATTAAATCATCACAAACCAATTTGAGTGACATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAACCACATAATTAAATCATCACAAACCAATTTGAGTGACATA  1089

seq1  AATCACAAGAGAGAATTC  1116
      ||||||||||||||||||
seq2  AATCACAAGAGAGAATTC  1107

seq1: chr9_28985661_28986776
seq2: B6Ng01-085I10.g_69_1174

seq1  GAATTCAAAGGGGACATTCAATAGCATGATGACAAACAGGTAAATAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGGACATTCAATAGCATGATGACAAACAGGTAAATAGTCC  50

seq1  TCCACAGGTGAGGCCTTCTCCTAAGGGCTTTAGTTTACCTACATATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGTGAGGCCTTCTCCTAAGGGCTTTAGTTTACCTACATATAAAT  100

seq1  GTAATCTTCACCCCACTCCTCACATTTACCCTATTTCGCAAGAAAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTCACCCCACTCCTCACATTTACCCTATTTCGCAAGAAAAAGCC  150

seq1  CCAGGGGTGCAGTAATATTTGAGGCCTTTCTCTCCGTCAGAAAACAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTGCAGTAATATTTGAGGCCTTTCTCTCCGTCAGAAAACAGACA  200

seq1  ATGTAGCCCAAAGCTGTTGTTCAGTAACTAGAAATTCATCTACTTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCAAAGCTGTTGTTCAGTAACTAGAAATTCATCTACTTGTTAA  250

seq1  ATGTTGTCTGCTGCCTCAGGACCATTCTGATTTTGAAAAGGGCTGAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCTGCTGCCTCAGGACCATTCTGATTTTGAAAAGGGCTGAACAC  300

seq1  CAGACCTGTGATATGAGAAGCAGAGAGATGAGAACCTGGAGAAATGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGTGATATGAGAAGCAGAGAGATGAGAACCTGGAGAAATGCCAC  350

seq1  AAAGCCCACAAAAACAACGGGAGGACCCCAAACAAACATTAAGCCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACAAAAACAACGGGAGGACCCCAAACAAACATTAAGCCTACAA  400

seq1  AGTATAAACAAGAAGAGAACATAGGAAGAAGAGACTCTGAATCCAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAACAAGAAGAGAACATAGGAAGAAGAGACTCTGAATCCAGTCTT  450

seq1  ATAGCAGAGGCATGGGGAAGCCAAAACTGGATTGGATGGAGAAGGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAGGCATGGGGAAGCCAAAACTGGATTGGATGGAGAAGGGAGCA  500

seq1  AGCACCCTATACTTATAATGGGTGTGTGGAAGGGATGGTTGCGATAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTATACTTATAATGGGTGTGTGGAAGGGATGGTTGCGATAAGAT  550

seq1  CCTGGGTACTGTTTCTTGGCTTTGTCATCATGGAAGACGGGTCTATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTACTGTTTCTTGGCTTTGTCATCATGGAAGACGGGTCTATGGCA  600

seq1  TGGTATATATGTACAGCAACCGAAGAACATTAAAATTCTTGTCTTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATATGTACAGCAACCGAAGAACATTAAAATTCTTGTCTTAAAAT  650

seq1  AAAACAAACTTGTAGTTGTATGAAACATTTTAAAAATGCTAAGAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACTTGTAGTTGTATGAAACATTTTAAAAATGCTAAGAGGAGGA  700

seq1  AAAGCCAAGGGAAACAATAATTAGACAATAATTTTGTACAAAACATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAGGGAAACAATAATTAGACAATAATTTTGTACAAAACATAATA  750

seq1  CTGGAATAGGAGAAAAACTGGTTCAACTCAAAAAGTAAATTGATGAAACG  800
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CTGGAATAGGAG-AAAACTGGTTC-ACTCAAAAAGTAAATTGATGAAACG  798

seq1  TTCCGTGTCTAGCTTCAAGATGACCACCAGAGAGGACTTGCTGGGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTCTAGCTTCAAGATGACCACCAGAGAGGACTTGCTGGGGAGAA  848

seq1  CAGCCAACCTAGCTTGGATTAGGATTGTGGAAAAAAAATCAGTAATGTTG  900
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CAGCCAACCTAGCTTGGATTAGGA-TGTGG-AAAAAAATCAGTAATGTTG  896

seq1  ATATTCCCAGCCACCCACTCAGGCCTCCCAGCCAAGCCCCACCCACCTTG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATTCCCAGCCACCCACTCAGGCCTCCCAGCCCAGCCCCACCCACCTTG  946

seq1  TACAATGAGGTGGACCCTGGAGGTCTTAGGGTGGTTGTCTGTCTGTACCG  1000
      |||| ||||   ||||||| ||||| ||||||||||||| ||||||||||
seq2  TACATTGAG--TGACCCTGTAGGTC-TAGGGTGGTTGTC-GTCTGTACCG  992

seq1  AGCAGGTATAAGGGCCCTCATCGTACACATCCACATTCTGGATCTCAATG  1050
      | || |||| ||||||||||||||| |||||||||||   ||||||||||
seq2  A-CA-GTAT-AGGGCCCTCATCGTA-ACATCCACATTTCTGATCTCAATG  1038

seq1  CTGTACTGGGTCTGGGTGTTACTCAGGAGG-ACCACAC-GAGGA-TCTAG  1097
      |||||||||| || |||||||||||| ||| ||| ||| ||||| |||||
seq2  CTGTACTGGG-CT-GGTGTTACTCAGAAGGAACCTCACTGAGGATTCTAG  1086

seq1  GCA-CCACTTGTCATTTCCA  1116
      ||| ||||||||||||||||
seq2  GCATCCACTTGTCATTTCCA  1106