BAC Information

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BAC

Clone NameB6Ng01-086C02
Chromosome9 (Build37)
Map Location 33,084,420 - 33,085,045
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C02.bB6Ng01-086C02.g
ACCDH899613DH899614
length1,191983
definitionDH899613|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C02, 5' end.DH899614|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaaacatctctggtttgcagtaagaagattttcaatctctt
tggtttgtgtgtgctgaagtgagtgagagctttgttcttccagtaattga
cagctcttttggggttttagtttctctctccgagtcaagagagactctat
tcaagcactcataatcaatagccatttctgagtatcttttcaggagtttt
tctacactgaagcacttttcttgacgtcttcctgtacagtattcaacacc
acataataaccccgtttcatattccactgcctcttcatggttctgatggg
ccttaagcatggcttctcttaggttgtccttgagctgttttctctccatt
ctgaatatctcctcaattttctttacatcatctctttcttttcttacaga
tttcatttcttcaaggttctcatgaatcttctgagcaagatttaaattct
ccatctctaccttactcagagttaaaccctgccccttgaactgcttcttg
gtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccat
tgttggtgggattgaaagcttgtacaaccactctggaaatcagtctggcg
gttcctcagaaaattggacatagaactactagaggatcccgcaatacctc
tcctgggcatatatccagaagatgttccaaccagtaagaaggacacatgc
tccactatgttcatagcagccttatttataatagccagaagctggaaaga
acccagatgcctctcaacagaggaatggatacagaaaatgtgatacattt
acacaatggagtactactcagctattaaaaagaatgaatttatgaaattc
ctaggcaaatggatggacctggagggcatcatcctgagtgaggtaaccca
atcacaaaagaactcacacaatatgtactcactgataagtggatattagc
ccagaaatttagaatacccaagatatagatacaatttgctaacgcatgaa
actcagagaatgagaccaaagtgtggacactttgccccttctagattggg
aacaaacacccatgagagttacgagacaagtttgaagctgaaacaaaaga
tgatcatgtagaaactgcatattcccggatcattccattatcagctttca
acgctgacaccatgcattaaatagcaagaattgctaaggac
gaattcacaacagaggaatcttgaatgggtgagaagcacttaaagaaatg
ttcaaagtccttaattttcagggaaatacaaatcaaaacgactctgaaat
ttcaccttacaccaatcagaatggctaggatcaaaacctcaagtgacagc
acatgttggtgaacatgtggagaaacaggaacactcttccatttctgatg
ggattgcaaactagtataaccactctggaaatcaatctggaggttcctca
gaaaattggaaatagatcgaccttaagacccagctatacaactcttcgac
atatacccaaaagatgccccagcatgccacaaagtcacatgttccactat
gttcattgcagacttgtttgttacagtcagaatctggaaacaatccagat
gtcccacttcagaagaatggatacagaaaatgtggttcatttacacaatg
gaatactactcagctgtcaagaatgagaacattctcagcttttcccacaa
atgggtggaactagaaaatatcatctgagtgaggttactcagatccaaaa
agaaatgcatggcatgtactcactataagtggatattagccaaaaaagta
cagaataccgagaatacagtctatagaacacaaaaagtttaacaagctga
agagcccaaatgagaattcctcaattccacttgggagggagaagaaagca
atcacaggaggtgaagggtgggagggagggacaagtaggagtgggaaacg
ggacaagtaggagaagagggaaacatgatcaggtattcggtggggtcgac
aggactgaagtcccaaggggcagcagaaataggcaacttcagaaggtagg
agttccgggcaacctccagaaagtaccagagacatgggaggtggacagac
tttcaggactcaagggtagggacccttaaatgaataaatacaatggtgga
gaaggtatcttgtttatgccttccttcttgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33084420_33085045
seq2: B6Ng01-086C02.b_543_1234 (reverse)

seq1  GTCCTTTCAGCAAAATCTTGCTAGTGTGTGCATTGGTGTCAGCGTTTGGA  50
      ||||||  ||| || |||||||| |   |||| ||||||||||| ||| |
seq2  GTCCTT--AGC-AATTCTTGCTATTTAATGCA-TGGTGTCAGCG-TTGAA  45

seq1  AGCTGATTATGGGATGGATCCCCAGATATGGCCGTCTCTAGATGGTCCAT  100
      ||||||| |||| || |||||    |||| || || |||| ||| | |||
seq2  AGCTGATAATGGAAT-GATCCGGGAATAT-GCAGTTTCTACATGAT-CAT  92

seq1  CCTTTCGTCACAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGT  150
       |||| ||  ||||| ||||| ||||||| |||||||    |||||||| 
seq2  -CTTTTGTTTCAGCTTCAAAC-TTGTCTC-GTAACTC---TCATGGGTG-  135

seq1  TTTGTTCCCA----------------------------------------  160
      ||||||||||                                        
seq2  TTTGTTCCCAATCTAGAAGGGGCAAAGTGTCCACACTTTGGTCTCATTCT  185

seq1  -----------------------------------------ATTCTAAGT  169
                                               ||||||| |
seq2  CTGAGTTTCATGCGTTAGCAAATTGTATCTATATCTTGGGTATTCTAAAT  235

seq1  TTCTGGGCTAATATTCACTTATCAGTGAGTACATATTGTTTGAGTTCCTT  219
      |||||||||||||| |||||||||||||||||||||||| ||||||| ||
seq2  TTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTT  285

seq1  TGTGATTGGCTTACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCATTT  269
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTT  335

seq1  GCCGAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCA  319
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCA  385

seq1  TTGTGTAGATGCACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCAT  369
      ||||||| ||| | |||||||| ||||||||||||||||||||| |||||
seq2  TTGTGTAAATGTATCACATTTTCTGTATCCATTCCTCTGTTGAGAGGCAT  435

seq1  CTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGACTGCTATGAACAT  419
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACAT  485

seq1  AGTGGAGCATGTGTCCTTCTTACTGGTTGGGACCTGTTCTGGATATATGC  469
      |||||||||||||||||||||||||||||| || | ||||||||||||||
seq2  AGTGGAGCATGTGTCCTTCTTACTGGTTGGAACATCTTCTGGATATATGC  535

seq1  CCAGGAGAGGTATTGCTGGATCCTCCAGTAGTACTATAACCAATTTTTTG  519
      |||||||||||||||| |||||||| |||||| ||||  |||||||| ||
seq2  CCAGGAGAGGTATTGCGGGATCCTCTAGTAGTTCTATGTCCAATTTTCTG  585

seq1  AGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCA  569
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTTCAATCCCA  635

seq1  GCACCAATGGAGGAGTGTTTCTCTTTCTCCACATCCTCGCCAGCATCTGC  619
       || ||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGC  685

seq1  TGTCACC  626
      |||||||
seq2  TGTCACC  692