BAC Information

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BAC

Clone NameB6Ng01-086C07
Chromosome9 (Build37)
Map Location 53,248,444 - 53,382,421
singlet/doubletdoublet
Overlap geneAtm, Npat
Upstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
Downstream geneAcat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C07.bB6Ng01-086C07.g
ACCDH899623DH899624
length2281,177
definitionDH899623|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C07, 5' end.DH899624|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,248,444 - 53,248,672)(53,381,226 - 53,382,421)
sequence
tgtgtgtgtgtggctggtcggtggggtgggggtggggatggttctaaagt
gaacaggcatcgtatgtgtagacagaaataatttctcagttgcagtcccc
tcacttagaccactgcggcagaccgtttattgattcatcttaaagaaaca
gctcggctcttgttatcacggacttaatactgccatggagatatgaatgg
ctcttaaccgtgcctgcctaggaagagt
gaattctcattatgcagcacatagatatgagttacaggagaaaatctgta
atttcctgcattatatgaattcctgaaaaacacagagaattaactaagct
acaaagaaatttaaccaatttctaaatataaatccaaactggtaaagtta
atgaaaatatatttattcaaacctaactgtaggacagacccagactgagt
tatgcaaacagtaactgtatgcttagttagctccttaggagtagaacagc
tcagtcatagaacatttctcaaaatataaatttgtacagtaaaatctagc
aattaaaaagacataatttacatcttgaagacgtttttgttgttgttaca
gtaggatggatttatttcttaaaggcccagtacaaaaaatggttgaagaa
agtgactttttaataaaatatacacccgtagaaaaaaaaatcctaatatg
ctgatatttaaacagtaagaacttaagaaaacacttcaatatctaggcac
aatcggtcaagtattaatgataatttctgtcattcctttaaagtttaggc
cagcttttcaacttgactgttgtttatgagtcagtccaacacagagaagg
cacctctcactcccctaaggaccttttgagagtaactatttataacactt
taaagaacacaaggttctataggttatgtatgaacacagttatttacaca
tcccatttcagggtaaactaaattacaatataactatgatttgcattttt
acatcttatgatggatatgactttcaaagacaccagaagacaatcctcca
tataagcttttacatacaagatttaattaaatgtgcattggtcactagta
tgtgaaaaagtctatgaattagtgcaattctttgtatccccagtgcttag
ggaaagtttacatataatcaagaaatctcgactactacataactcaaatt
tttatggctcatagtctaaccacttaatgtctgtaaagatttcaaaagtg
taagtgaaatatcaggaacacttaataaatggtttataaaatcctcttta
aaccaagagaatagatgatcgaataagtataaaacttcagaaatttgttt
tactgaaattatgaggtggataaatattgactctaggggatcatcatcca
cctgttgctactgaatagaatttacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53248444_53248672
seq2: B6Ng01-086C07.b_53_280

seq1  TGTGTGTGTGTGGCTGGTCGGTGGGGTGGGGGTGGGGATGGTTCTAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGGCTGGTCGGTGGGGTGGGGGTGGGGATGGTTCTAAAGT  50

seq1  GATACAGGCATCGTAGGTGGAGACAGAAATAATTTCTCAGTTGCAGTCCC  100
      || |||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  GA-ACAGGCATCGTATGTGTAGACAGAAATAATTTCTCAGTTGCAGTCCC  99

seq1  CTCACTCAGACCACTGCGGCAGACTGTTTATTGAGTCATCTAAAAGACAC  150
      |||||| ||||||||||||||||| ||||||||| |||||| ||||| ||
seq2  CTCACTTAGACCACTGCGGCAGACCGTTTATTGATTCATCTTAAAGAAAC  149

seq1  AGCTCGGCTCTTGTTATCACGGACTTAATAGTGCCAGTGAGATATGAATG  200
      |||||||||||||||||||||||||||||| |||||  ||||||||||||
seq2  AGCTCGGCTCTTGTTATCACGGACTTAATACTGCCATGGAGATATGAATG  199

seq1  GCTCTTAACCGTGCCTGCACAGGAAGAGT  229
      ||||||||||||||||||  |||||||||
seq2  GCTCTTAACCGTGCCTGCCTAGGAAGAGT  228

seq1: chr9_53381226_53382421
seq2: B6Ng01-086C07.g_67_1243 (reverse)

seq1  TAGTAAAATATCTAATCAGTAAACAACAGTTGGATGATGATTTCCCCCTA  50
      |||||||   |||| ||||| | |||||| |||||||||||   ||||||
seq2  TAGTAAA--TTCTATTCAGT-AGCAACAGGTGGATGATGAT---CCCCTA  44

seq1  GAGTCAATATTTTATCACCCTTCATAAATTTCAGTAAAAACTATATTTCT  100
      ||||||||||||   ||||  |||| |||||||||||||   | ||||||
seq2  GAGTCAATATTTATCCACC--TCAT-AATTTCAGTAAAA--CAAATTTCT  89

seq1  GAAGTTTTATACTTTATTCTGATCATCTATTCTCTTTGTTTTAAAGAGAT  150
      |||||||||||| |||||| |||||||||||||| ||| |||||||||  
seq2  GAAGTTTTATAC-TTATTC-GATCATCTATTCTC-TTGGTTTAAAGAGGA  136

seq1  TTTTATAAACCATTTATTAAGTGTT-CTGATATTTCACTTACAACTTTTT  199
      ||||||||||||||||||||||||| |||||||||||||||||   ||||
seq2  TTTTATAAACCATTTATTAAGTGTTCCTGATATTTCACTTACA--CTTTT  184

seq1  GAAATCTTTTACAGAACATTAAGTGGTTAGACTATTGAGCCATAAAAATT  249
      |||||| ||||||| ||||||||||||||||||| |||||||||||||||
seq2  GAAATC-TTTACAG-ACATTAAGTGGTTAGACTA-TGAGCCATAAAAATT  231

seq1  TGAGTTATGTAGTAGTCGAGATTTCTTGATTATATGTAAACTTTCCCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATGTAGTAGTCGAGATTTCTTGATTATATGTAAACTTTCCCTAA  281

seq1  GCACTGGGGATACAAAGAATTGCACTAATTCATAGACTTTTTCACATACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGATACAAAGAATTGCACTAATTCATAGACTTTTTCACATACT  331

seq1  AGTGACCAATGCACATTTAATTTAAATCTTGTATGTAAAAGCTTATATGG  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTGACCAATGCACATTTAA-TTAAATCTTGTATGTAAAAGCTTATATGG  380

seq1  AGGATTGTCTTCTGGTGTCTTTGAAAGTCATATCCATCATAAGATGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTCTTCTGGTGTCTTTGAAAGTCATATCCATCATAAGATGTAAA  430

seq1  AATGCAAATCATAGTTATATTGTAATTTAGTTTACCCTGAAATGGGATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATCATAGTTATATTGTAATTTAGTTTACCCTGAAATGGGATGT  480

seq1  GTAAATAACTGTGTTCATACATAACCTATAGAACCTTGTGTTCTTTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAACTGTGTTCATACATAACCTATAGAACCTTGTGTTCTTTAAAG  530

seq1  TGTTATAAATAGTTACTCTCAAAAGGTCCTTAGGGGAGTGAGAGGTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAATAGTTACTCTCAAAAGGTCCTTAGGGGAGTGAGAGGTGCCT  580

seq1  TCTCTGTGTTGGACTGACTCATAAACAACAGTCAAGTTGAAAAGCTGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTGGACTGACTCATAAACAACAGTCAAGTTGAAAAGCTGGCC  630

seq1  TAAACTTTAAAGGAATGACAGAAATTATCATTAATACTTGACCGATTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAAAGGAATGACAGAAATTATCATTAATACTTGACCGATTGTG  680

seq1  CCTAGATATTGAAGTGTTTTCTTAAGTTCTTACTGTTTAAATATCAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATATTGAAGTGTTTTCTTAAGTTCTTACTGTTTAAATATCAGCAT  730

seq1  ATTAGGATTTTTTTTTCTACGGGTGTATATTTTATTAAAAAGTCACTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATTTTTTTTTCTACGGGTGTATATTTTATTAAAAAGTCACTTTC  780

seq1  TTCAACCATTTTTTGTACTGGGCCTTTAAGAAATAAATCCATCCTACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCATTTTTTGTACTGGGCCTTTAAGAAATAAATCCATCCTACTGT  830

seq1  AACAACAACAAAAACGTCTTCAAGATGTAAATTATGTCTTTTTAATTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAACGTCTTCAAGATGTAAATTATGTCTTTTTAATTGCT  880

seq1  AGATTTTACTGTACAAATTTATATTTTGAGAAATGTTCTATGACTGAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTACTGTACAAATTTATATTTTGAGAAATGTTCTATGACTGAGCT  930

seq1  GTTCTACTCCTAAGGAGCTAACTAAGCATACAGTTACTGTTTGCATAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTCCTAAGGAGCTAACTAAGCATACAGTTACTGTTTGCATAACT  980

seq1  CAGTCTGGGTCTGTCCTACAGTTAGGTTTGAATAAATATATTTTCATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGGTCTGTCCTACAGTTAGGTTTGAATAAATATATTTTCATTAA  1030

seq1  CTTTACCAGTTTGGATTTATATTTAGAAATTGGTTAAATTTCTTTGTAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAGTTTGGATTTATATTTAGAAATTGGTTAAATTTCTTTGTAGC  1080

seq1  TTAGTTAATTCTCTGTGTTTTTCAGGAATTCATATAATGCAGGAAATTAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATTCTCTGTGTTTTTCAGGAATTCATATAATGCAGGAAATTAC  1130

seq1  AGATTTTCTCCTGTAACTCATATCTATGTGCTGCATAATGAGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTCCTGTAACTCATATCTATGTGCTGCATAATGAGAATTC  1177