BAC Information

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BAC

Clone NameB6Ng01-086D22
Chromosome9 (Build37)
Map Location 96,868,078 - 97,013,972
singlet/doubletdoublet
Overlap geneSpsb4, LOC100040254, Slc25a36
Upstream geneXrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226
Downstream geneEG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086D22.bB6Ng01-086D22.g
ACCDH899695DH899696
length1,223765
definitionDH899695|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D22, 5' end.DH899696|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,868,078 - 96,869,295)(97,013,190 - 97,013,972)
sequence
gaattcagtggttggaacgagtgcaagaaaagcattctgtgcaatgttat
ttctaaagaggcaagtcagcaatgacctcagtgtacaaagtacaggacac
tgaagttacagtacaaccaaatagtgacctattagtcatcaaaacccaat
atgatttctacaaacactaccattatctagttctggtatctaagcagtta
ggtaagaggagggagacaaactgtcattatctataggcaatacaacagta
tgcctggaccaccctagagaactccaagagagcttaactaagggaataag
aactcagagaggcagttcattactgactggtaggatctgcttccttccga
gataaacaacagtttaagaagtataacagaaagtaggaatcttttcgcaa
taaaaacacaaagatgaaccacctagggataagcaggacaagaattgact
ataagaagactattataaggacaagaattgactaagactcataagagtaa
caatgtagacaggctgaaggccaaaactgagagcttgaaagaagtggtgt
attttatgtttggatgggcgtgttcaatgactggatacgtcaactacccc
cctacccctgcccaaggataatgtctaaacacagtgtgagctcagaatac
caacaggacttctggagaccttaaccataactgattaaaatttatctgga
aaagtaaatacaaaagaaggaacggaaaacaatgctctgagaaatgactt
gggtgtggccctgccagctcttgacacatataatcatggcattacagtaa
ttaaagccattttagtactgagctcaggacaggactggacagacccacca
atgagacttggcctttcaacacaaattagtaaatatctattggctgatgt
ggtagtttgcatgaaaataacccccatgggctcatatatttgaatgtttg
gttcccagttggcagactgttcagaagagttaggatgtcagccttgttag
agagtgtgtcactggggggtggggtctgaggtttcaaagccagtccagac
ttcagtctgctgttttatgaatggatagaagctttcagcttactcttcaa
ggccatggctgcagcctgttcattctttcccgccacgatgaatcagagaa
ttagcctcttgaaccttaagccaggtctcagtttaatgcaactttttagg
aacattgccttgggtccatagtg
gaattcagtgaagcagtgttctatccggagagataaagaaggcgatgaca
gtgctgtgaacccagcaggcttggcggtttgctcaagcctgagtccttat
agacttcagcagcggtgccccagaggacggcgcccgaattagcacaatgt
gctgggtctgcacccacagtggcctccaagagagacagaaaggggaccag
caacactgtcttgtcaccgacccaggaataactgtgatggtacaagaaca
tgcccatagaacttgttcacagccgcagcgttggggacagcctcagagtg
gaaacaagggctcgttctctgaataccgatcagtcaagtattcagtcaag
caacgaggttctgccgtgaaagggaacgaagcatccatcctgccccaaca
ctctagtggatttcgaagacacttttaatgaaaaattcctcacaccaaag
gccacacaccatttttaaaaatatgtatttatttataagtaatgtgcggc
atagacaaaaccagagggatagaaactagatcagtggtttctagggaaga
ggaggggcgaatgggagcgactcctaacaaacacgtggctgcattgtggg
tgaggaagcggtcgggaaataggtcggtgagggctacacaaccaggaaaa
tatactaaaacccaccagaccacacacacacacacacacacacacaccca
tagatatatatatatatatatatatatgtatatatatatatatatctata
tatatatatatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96868078_96869295
seq2: B6Ng01-086D22.b_48_1270

seq1  GAATTCAGTGGTTGGAACGAGTGCAAGAAAAGCATTCTGTGCAATGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTTGGAACGAGTGCAAGAAAAGCATTCTGTGCAATGTTAT  50

seq1  TTCTAAAGAGGCAAGTCAGCAATGACCTCAGTGTACAAAGTACAGGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGAGGCAAGTCAGCAATGACCTCAGTGTACAAAGTACAGGACAC  100

seq1  TGAAGTTACAGTACAACCAAATAGTGACCTATTAGTCATCAAAACCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTACAGTACAACCAAATAGTGACCTATTAGTCATCAAAACCCAAT  150

seq1  ATGATTTCTACAAACACTACCATTATCTAGTTCTGGTATCTAAGCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTACAAACACTACCATTATCTAGTTCTGGTATCTAAGCAGTTA  200

seq1  GGTAAGAGGAGGGAGACAAACTGTCATTATCTATAGGCAATACAACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGGAGGGAGACAAACTGTCATTATCTATAGGCAATACAACAGTA  250

seq1  TGCCTGGACCACCCTAGAGAACTCCAAGAGAGCTTAACTAAGGGAATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGACCACCCTAGAGAACTCCAAGAGAGCTTAACTAAGGGAATAAG  300

seq1  AACTCAGAGAGGCAGTTCATTACTGACTGGTAGGATCTGCTTCCTTCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGAGGCAGTTCATTACTGACTGGTAGGATCTGCTTCCTTCCGA  350

seq1  GATAAACAACAGTTTAAGAAGTATAACAGAAAGTAGGAATCTTTTCGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAACAGTTTAAGAAGTATAACAGAAAGTAGGAATCTTTTCGCAA  400

seq1  TAAAAACACAAAGATGAACCACCTAGGGATAAGCAGGACAAGAATTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACAAAGATGAACCACCTAGGGATAAGCAGGACAAGAATTGACT  450

seq1  ATAAGAAGACTATTATAAGGACAAGAATTGACTAAGACTCATAAGAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGACTATTATAAGGACAAGAATTGACTAAGACTCATAAGAGTAA  500

seq1  CAATGTAGACAGGCTGAAGGCCAAAACTGAGAGCTTGAAAGAAGTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGACAGGCTGAAGGCCAAAACTGAGAGCTTGAAAGAAGTGGTGT  550

seq1  ATTTTATGTTTGGATGGGCGTGTTCAATGACTGGATACGTCAACTACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTTTGGATGGGCGTGTTCAATGACTGGATACGTCAACTACCCC  600

seq1  CCTACCCCTGCCCAAGGATAATGTCTAAACACAGTGTGAGCTCAGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCTGCCCAAGGATAATGTCTAAACACAGTGTGAGCTCAGAATAC  650

seq1  CAACAGGACTTCTGGAGACCTTAACCATAACTGATTAAAATTTATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGACTTCTGGAGACCTTAACCATAACTGATTAAAATTTATCTGGA  700

seq1  AAAGTAAATACAAAAGAAGGAACGGAAAACAATGCTCTGAGAAATGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATACAAAAGAAGGAACGGAAAACAATGCTCTGAGAAATGACTT  750

seq1  GGGTGTGGCCCTGCCAGCTCTTGACACATATAATCATGGCATTACAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCCCTGCCAGCTCTTGACACATATAATCATGGCATTACAGTAA  800

seq1  TTAAAGCCA-TTTAGTACTGAGCTCAGGACAGGACTGGACAGACCCACCA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCATTTTAGTACTGAGCTCAGGACAGGACTGGACAGACCCACCA  850

seq1  ATGAGACTTGGCCTTTCAACACAAATTAGTAAATATCTATTGGCTGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTTGGCCTTTCAACACAAATTAGTAAATATCTATTGGCTGATGT  900

seq1  GGTAGTTTGCATGAAAATAACCCCCATGGGCTCATATATTTGAATGTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTGCATGAAAATAACCCCCATGGGCTCATATATTTGAATGTTTG  950

seq1  GTTCCCAGTTGGCAGACTGTTCAGGAAGAGTTAGGATGTCAGCCTTGTTA  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTCCCAGTTGGCAGACTGTTCA-GAAGAGTTAGGATGTCAGCCTTGTTA  999

seq1  GAGGAGGTGTGTCACT-GGGGGTGGGGTCTGAGGTTTCAAAAGCCCAGTC  1048
      |||   |||||||||| ||||||||||||||||||||||||   ||||||
seq2  GAG--AGTGTGTCACTGGGGGGTGGGGTCTGAGGTTTCAAA--GCCAGTC  1045

seq1  CAGAC-TCAGTCTGCTG-TTTATGAATGGGATAGAAGCTCTCAGCTACCT  1096
      ||||| ||||||||||| ||||||||| ||||||||||| ||||||  ||
seq2  CAGACTTCAGTCTGCTGTTTTATGAAT-GGATAGAAGCTTTCAGCTTACT  1094

seq1  CTCCAGTGCCATGCCTGCCAGCTG-TCATGC-TTCCCGCCACGATG-ATC  1143
      || ||  |||||| ||||   ||| |||| | |||||||||||||| |||
seq2  CTTCAAGGCCATGGCTGCAGCCTGTTCATTCTTTCCCGCCACGATGAATC  1144

seq1  AGAG-ATTAGCCCTCTGAAACTATAAG-CAAGTCTCCAGTTAAATGCATC  1191
      |||| ||||| |||||  |||  |||| || |||| ||||| |||||| |
seq2  AGAGAATTAG-CCTCTTGAACCTTAAGCCAGGTCT-CAGTTTAATGCAAC  1192

seq1  TTTTTAG--ACATTGCCTTGG--TCATAGTG  1218
      |||||||  ||||||||||||   |||||||
seq2  TTTTTAGGAACATTGCCTTGGGTCCATAGTG  1223

seq1: chr9_97013190_97013972
seq2: B6Ng01-086D22.g_67_831 (reverse)

seq1  GTATATATATATATATATATATATATATATATATATATATATATATATAT  50
                         |||||||||||||||||| ||||||||||||
seq2  ------------------GTATATATATATATATATAGATATATATATAT  32

seq1  ATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGT  100
      ||||| |||||||||||||||||||||||| |||| ||||||||||||||
seq2  ATATACATATATATATATATATATATATATCTATGGGTGTGTGTGTGTGT  82

seq1  GTGTGTGTGTGTGGTTTGGTGGGTTTTAGTATATTTTCCTGGTTGTGTAG  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGGTCTGGTGGGTTTTAGTATATTTTCCTGGTTGTGTAG  132

seq1  CCCTCACCGACCTATTTCCCGACCGCTTCCTCACCCACAATGCAGCCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCGACCTATTTCCCGACCGCTTCCTCACCCACAATGCAGCCACG  182

seq1  TGTTTGTTAGGAGTCGCTCCCATTCGCCCCTCCTCTTCCCTAGAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTAGGAGTCGCTCCCATTCGCCCCTCCTCTTCCCTAGAAACCAC  232

seq1  TGATCTAGTTTCTATCCCTCTGGTTTTGTCTATGCCGCACATTACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTTTCTATCCCTCTGGTTTTGTCTATGCCGCACATTACTTATA  282

seq1  AATAAATACATATTTTTAAAAATGGTGTGTGGCCTTTGGTGTGAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACATATTTTTAAAAATGGTGTGTGGCCTTTGGTGTGAGGAATT  332

seq1  TTTCACTAAAAGTGTCTTCGAAATCCACTCGAGTGTTGCTGCAGGATGGA  400
      ||||| ||||||||||||||||||||||| ||||||||  ||||||||||
seq2  TTTCATTAAAAGTGTCTTCGAAATCCACTAGAGTGTTGGGGCAGGATGGA  382

seq1  TGCTTCGTTCCCTTTCACGGCAGAACCTCGTTGCTTGACTGAATACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGTTCCCTTTCACGGCAGAACCTCGTTGCTTGACTGAATACTTGA  432

seq1  CTGATCGGTATTCAGAGAACGAGCCCTTGTTTCCACTCTGAGGCTGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCGGTATTCAGAGAACGAGCCCTTGTTTCCACTCTGAGGCTGTCCC  482

seq1  CAACGCTGCGGCTGTGAACAAGTTCTATGGGCATGTTCTTGTACCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTGCGGCTGTGAACAAGTTCTATGGGCATGTTCTTGTACCATCAC  532

seq1  AGTTATTCCTGGGTCGGTGACAAGACAGTGTTGCTGGTCCCCTTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCTGGGTCGGTGACAAGACAGTGTTGCTGGTCCCCTTTCTGTC  582

seq1  TCTCTTGGAGGCCACTGTGGGTGCAGACCCAGCACATTGTGCTAATTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGAGGCCACTGTGGGTGCAGACCCAGCACATTGTGCTAATTCGG  632

seq1  GCGCCGTCCTCTGGGGCACCGCTGCTGAAGTCTATAAGGACTCAGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGTCCTCTGGGGCACCGCTGCTGAAGTCTATAAGGACTCAGGCTTG  682

seq1  AGCAAACCGCCAAGCCTGCTGGGTTCACAGCACTGTCATCGCCTTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCGCCAAGCCTGCTGGGTTCACAGCACTGTCATCGCCTTCTTTA  732

seq1  TCTCTCCGGATAGAACACTGCTTCACTGAATTC  783
      |||||||||||||||||||||||||||||||||
seq2  TCTCTCCGGATAGAACACTGCTTCACTGAATTC  765