BAC Information

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BAC

Clone NameB6Ng01-086O03
Chromosome9 (Build37)
Map Location 74,242,433 - 74,365,141
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc13c, Wdr72, Nr1h2-ps
Downstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O03.bB6Ng01-086O03.g
ACCDH900162DH900163
length1,1061,114
definitionDH900162|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O03, 5' end.DH900163|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,364,279 - 74,365,141)(74,242,433 - 74,243,584)
sequence
gaattcttggccaaaagggatggattccatggattccctaggcatcacag
gtcattgccaaggctgccagttatggcaatcttatggcaagctactcttg
ctgaggacgacacttatgtaattgatcatggagaggctgaataggttttc
aactacgagcttcacccctactgtatcataggatttttaggggggtgggt
ttctatccctccctctcttttctgtttagctcccaaataaaaggctcaaa
tacctggtctttcatttgcaagctcctggcactgtgttgagcaggttctg
aagctaatctatcccagctaagaaaggaataaccagggaaatgccgcatc
acttgccaactgcatcttcctcagctatgtgtgtatcctcagggcaagct
tatcttggccaagggccatgatccatcctgcctcatggcaagcttctccc
tccagctcctctgtccttcacatcatgcgtcctacctgagaccccctacg
ttctccagtcctaccttcctctctctcctacccagtcataggcactggcc
tttttagtaaccaaccagggactattggggaacattctttatagaacatt
ggttaaaacattgccccaggatcaggttttggtatgaacagggtcacaga
actcagcttctgaatactaagtgcataagactaaccccaacactactgac
tagcattcatggtgcttgaggaaactctgcatgctgtgaacttcattctg
caatctgcattcgatactctgttttggaggagaaaggtaaacatcaatat
gactcaactacaagccctatgacctacaacagctacctgcctatagtaaa
tactagtgaaatactggaataagtgttatgggagtaaccaggcatctttt
gattgtatttgaggcacattccatggtatagaaccaaatggaacctgaca
cactatagtggccatatctgagactagataggagagcatggacgtacggg
aaaataaaatacgattattatgttgaaggaaatattcattattacttcta
ctaccctatactatacctagtcgagccttgccaaccctcatcagagaagc
ttctat
gaattcactttaagggagcaagggggtaggaggacagaaatctcagcagc
aggcagaattgcaccagcctttccccatcacaccataaaaaagatgctag
aagatgccacagacttgacacgaggttcaagctgctcagtgaagtctgcc
atgaggtaaaatctgctctttcccctcccataacaacagaagccctgcac
ccaagaggagccatttccaggaatggtgcttccagattctagagatgaga
aaggcactgttgcgaaatctaccttcctggctcaggtacttctttctaga
atacttacacacattatgcttgccacagatggttccactttgggatggct
ctctcacacctcatccaaattcagcacctaatacttaataaaaagtatca
ctggcctggtataatggtgtatgcctttaatctcagcacggggtgacaga
gacaaatggattgccaagaatttgaggacagtctgtttcaaatagtgagt
tttaggccagcctgaaatattgatatattgggatactgatacacatctct
agatagatagatagatagatagatagatagatagatagatagatagatag
atagatagaagatagatagataggcagacagaaaaatcactgcctaagag
ataaatgaaatgttaaccctgtccacaactcaggaatgtctggattcatg
gatatttcatggtttaattttaaaatgaaaataataaactggagtattca
ccgtgtatctgattaaaggaccatatatcatttgagctgaatagaataaa
cgactcttaatgtcaggctttggatccataaaataaaacacaagacgagg
ttctcaccccagttgtctgaaagactgatttcttcttgtagaagatcatc
aacctcatgataaattagaaatgaaaaaaaaaagcaaattctagagtctg
tttgctttgactagtttggcaataaataatcccagctagcttttggtaaa
tatctcaagacgagagacaggtctaggttccctggtacagcattgtgtca
agtctcctatcctgatcttcgtgatccagagtgactacagacttcaagtc
tatgtcaaactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74364279_74365141
seq2: B6Ng01-086O03.b_303_1154 (reverse)

seq1  ATAGAAGCTTCTCTGATGAGGGTTGGGCAAGGCTCTGACCTAAGGTTATA  50
      |||||||||||||||||||||||| |||||||||| || |||  | ||||
seq2  ATAGAAGCTTCTCTGATGAGGGTT-GGCAAGGCTC-GA-CTA--GGTATA  45

seq1  GTAATAGGGTAGTAGAAGTAATAATTGATATGTTCCTTCAACATAATAAT  100
      || ||||||||||||||||||||||  |||| ||||||||||||||||||
seq2  GT-ATAGGGTAGTAGAAGTAATAATGAATAT-TTCCTTCAACATAATAAT  93

seq1  CGTATTTTATTTTCCCCTACGTCCATGCTCTTCCTATCTAGTCTCAGATT  150
      |||||||||||||||| ||||||||||||| |||||||||||||||||| 
seq2  CGTATTTTATTTTCCCGTACGTCCATGCTC-TCCTATCTAGTCTCAGAT-  141

seq1  ATTGGCCACTATAGTGGTGTCAGGTTCCATTTGGTTCTATACCATGGAAT  200
        ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -ATGGCCACTATAGT-GTGTCAGGTTCCATTTGGTTCTATACCATGGAAT  189

seq1  GTGCCTCAAATACAATCAAAAGATGCCTGGTTACTCCCATAACACTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCAAATACAATCAAAAGATGCCTGGTTACTCCCATAACACTTATT  239

seq1  CCAGTATTTCACTAGTATTTACTATAGGCAGGTAGCTGTTGTAGGTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTCACTAGTATTTACTATAGGCAGGTAGCTGTTGTAGGTCATA  289

seq1  GGGCTTGTAGTTGAGTCATATTGATGTTTACCTTTCTCCTCCAAAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTAGTTGAGTCATATTGATGTTTACCTTTCTCCTCCAAAACAGA  339

seq1  GTATCGAATGCAGATTGCAGAATGAAGTTCACAGCATGCAGAGTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGAATGCAGATTGCAGAATGAAGTTCACAGCATGCAGAGTTTCCTC  389

seq1  AAGCACCATGAATGCTAGTCAGTAGTGTTGGGGTTAGTCTTATGCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCATGAATGCTAGTCAGTAGTGTTGGGGTTAGTCTTATGCACTTA  439

seq1  GTATTCAGAAGCTGAGTTCTGTGACCCTGTTCATACCAAAACCTGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGAAGCTGAGTTCTGTGACCCTGTTCATACCAAAACCTGATCCT  489

seq1  GGGGCAATGTTTTAACCAATGTTCTATAAAGAATGTTCCCCAATAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATGTTTTAACCAATGTTCTATAAAGAATGTTCCCCAATAGTCCC  539

seq1  TGGTTGGTTACTAAAAAGGCCAGTGCCTATGACTGGGTAGGAGAGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTACTAAAAAGGCCAGTGCCTATGACTGGGTAGGAGAGAGAGG  589

seq1  AAGGTAGGACTGGAGAACGTAGGGGGTCTCAGGTAGGACGCATGATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGACTGGAGAACGTAGGGGGTCTCAGGTAGGACGCATGATGTGA  639

seq1  AGGACAGAGGAGCTGGAGGGAGAAGCTTGCCATGAGGCAGGATGGATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGGAGCTGGAGGGAGAAGCTTGCCATGAGGCAGGATGGATCAT  689

seq1  GGCCCTTGGCCAAGATAAGCTTGCCCTGAGGATACACACATAGCTGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGGCCAAGATAAGCTTGCCCTGAGGATACACACATAGCTGAGGA  739

seq1  AGATGCAGTTGGCAAGTGATGCGGCATTTCCCTGGTTATTCCTTTCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTTGGCAAGTGATGCGGCATTTCCCTGGTTATTCCTTTCTTAG  789

seq1  CTGGGATAGATTAGCTTCAGAACCTGCTCAACACAGTGCCAGGAGCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATAGATTAGCTTCAGAACCTGCTCAACACAGTGCCAGGAGCTTGC  839

seq1  AAATGAAAGACCA  863
      |||||||||||||
seq2  AAATGAAAGACCA  852

seq1: chr9_74242433_74243584
seq2: B6Ng01-086O03.g_65_1178

seq1  GAATTCACTTTAAGGGAGCAAGGGGGTAGGAGGACAGAAATCTCAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTAAGGGAGCAAGGGGGTAGGAGGACAGAAATCTCAGCAGC  50

seq1  AGGCAGAATTGCACCAGCCTTTCCCCATCACACCATAAAAAAGATGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAATTGCACCAGCCTTTCCCCATCACACCATAAAAAAGATGCTAG  100

seq1  AAGATGCCACAGACTTGACACGAGGTTCAAGCTGCTCAGTGAAGTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCACAGACTTGACACGAGGTTCAAGCTGCTCAGTGAAGTCTGCC  150

seq1  ATGAGGTAAAATCTGCTCTTTCCCCTCCCATAACAACAGAAGCCCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAAAATCTGCTCTTTCCCCTCCCATAACAACAGAAGCCCTGCAC  200

seq1  CCAAGAGGAGCCATTTCCAGGAATGGTGCTTCCAGATTCTAGAGATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGAGCCATTTCCAGGAATGGTGCTTCCAGATTCTAGAGATGAGA  250

seq1  AAGGCACTGTTGCGAAATCTACCTTCCTGGCTCAGGTACTTCTTTCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTGTTGCGAAATCTACCTTCCTGGCTCAGGTACTTCTTTCTAGA  300

seq1  ATACTTACACACATTATGCTTGCCACAGATGGTTCCACTTTGGGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACACACATTATGCTTGCCACAGATGGTTCCACTTTGGGATGGCT  350

seq1  CTCTCACACCTCATCCAAATTCAGCACCTAATACTTAATAAAAAGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACCTCATCCAAATTCAGCACCTAATACTTAATAAAAAGTATCA  400

seq1  CTGGCCTGGTATAATGGTGTATGCCTTTAATCTCAGCACGGGGTGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGGTATAATGGTGTATGCCTTTAATCTCAGCACGGGGTGACAGA  450

seq1  GACAAATGGATTGCCAAGAATTTGAGGACAGTCTGTTTCAAATAGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGGATTGCCAAGAATTTGAGGACAGTCTGTTTCAAATAGTGAGT  500

seq1  TTTAGGCCAGCCTGAAATATTGATATATTGGGATACTGATACACATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCAGCCTGAAATATTGATATATTGGGATACTGATACACATCTCT  550

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  600

seq1  ATAGATAGAAGATAGATAGATAGGCAGACAGAAAAATCACTGCCTAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGAAGATAGATAGATAGGCAGACAGAAAAATCACTGCCTAAGAG  650

seq1  ATAAATGAAATGTTAACCCTGTCCACAACTCAGGAATGTCTGGATTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAATGTTAACCCTGTCCACAACTCAGGAATGTCTGGATTCATG  700

seq1  GATATTTCATGGTTTAATTTTAAAATGAAAATAATAAACTGGAGTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCATGGTTTAATTTTAAAATGAAAATAATAAACTGGAGTATTCA  750

seq1  CCGTGTATCTGATTAAAGGACCATATATCATTTGAGCTGAATAGAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTATCTGATTAAAGGACCATATATCATTTGAGCTGAATAGAATAAA  800

seq1  CGACTCTTAATGTCAGGCTTTGGATCCATAAAATAAAACACAAGACGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTTAATGTCAGGCTTTGGATCCATAAAATAAAACACAAGACGAGG  850

seq1  TTCTCACCCCAGTTGTCTGAAAGACTGATTTCTTCTTGTAGAAGATCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCCAGTTGTCTGAAAGACTGATTTCTTCTTGTAGAAGATCATC  900

seq1  AACCTCATGATAAATTAGAAATGAAAAAAAAAAAGCAAATTCTAGAGTCT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCTCATGATAAATTAGAAATG-AAAAAAAAAAGCAAATTCTAGAGTCT  949

seq1  TGTTTTGCTTTTGAACTAGTTTGGCAATAAATTAATCCCAGGCTTAGGCT  1000
         ||||||||   ||||||||||||||||| |||||||| |||   |||
seq2  --GTTTGCTTT--GACTAGTTTGGCAATAAA-TAATCCCA-GCT--AGCT  991

seq1  TTTGGTAAATTATCTCCAAGAACGGAGAGACAGGGTTCTTAAGGGTTCCC  1050
      ||||||||| ||||| |||||   ||||||||||  |||    |||||||
seq2  TTTGGTAAA-TATCT-CAAGA--CGAGAGACAGG--TCT---AGGTTCCC  1032

seq1  TGGGTACCAAGCATCTGTGGTCAAAGGTCTCCCTATCCCTGATCTTCTGT  1100
      | |||||  ||||| ||| |||||  |||| ||||| |||||||||| ||
seq2  T-GGTAC--AGCAT-TGT-GTCAA--GTCT-CCTAT-CCTGATCTTC-GT  1072

seq1  GGCTCCAAGAGTGACATTACCAAGACTGTCCATGTCTATGTCAAAAACTC  1150
       | ||| ||||||||  |||  ||||  | || |||||||||  ||||||
seq2  -GATCC-AGAGTGAC--TAC--AGAC--TTCAAGTCTATGTC--AAACTC  1112

seq1  TC  1152
      ||
seq2  TC  1114