BAC Information

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BAC

Clone NameB6Ng01-087B20
Chromosome9 (Build37)
Map Location 114,836,484 - 115,024,878
singlet/doubletdoublet
Overlap geneGpd1l, LOC100043813, Osbpl10
Upstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8
Downstream geneLOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B20.bB6Ng01-087B20.g
ACCDH900333DH900334
length1,190958
definitionDH900333|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B20, 5' end.DH900334|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,023,686 - 115,024,878)(114,836,484 - 114,837,359)
sequence
gaattctgcccgctacacagaggcatcccagggaaatctgataagccagc
atgcccagttaccacacggtgcccaaaagacaccagaagtaagactcagc
cttcgacagaaaaacagaaagctggatgtggtggtacacgcctgcagtcc
tagaactagggagaaagaggcagggggattgctgtgagctcgtggcccgt
ctagttgacttagggagtacccaaactatagcaaggcagtcacacatacc
cccaaaaaaggttatgtgtatgtgtgtgtatatatattacttatagtaaa
agtatatattatttccatatatcaatatttacattgctaatgaaatattt
taccttgttttatactgcctttttatttcttattacatgcagatacatgc
taaaacatgtatgcggggccagactagcgtctcagatgaaactgcagagc
tatggggttgccaaaattccatttctagattttagttggcaagtaaaatc
cagaactctaggaaccgttttaaacaacacgcgcagtccagtaagacaga
cacgggatataacactcacaacttttctgcctatgtcacatgttcctggc
catgcagttcctagactgctgcatggtagcactagcgcagcgtttatcct
agactgctgcatggtaatgcagtatcttaaatactgtctgctcattctta
ccgttacttcacgtttatctgtgtgcaccatgttctaacataatatatgt
ccttaaatcaagaatagatctaccctgatgaacttcttcctgcccccaat
gtcatgggtgtgtttcctacagttcccagctggggaggggagtggatagt
cttgtgttgacagaggagggtattcacccatgtgggtacatgtggaagac
aaagggtgacatccagaaatcttcctcaactgcttctccaccttagattt
ggcaatgttgccagcccgactggccagcaatcctccgggacccagctgct
tctgttcacggattcagaactgcaggcacacgtcatcacaaccgggcaat
tttaacgtggggtcttggagaatcaagctcaggcttcaatcaatcatctc
ttaacctcggcaagcacttcactgactgacttcacctcagcacctatcat
atcaaggcctcatactgctgtatgcaaatggctacaaaac
gaattccaaatgtatcctgaggtatgtctgaaattagggagtgatcggta
gagataggggagagagcttcctagcccttagtgtcagcagccacgacacc
ctagactggggccaccctgaagtccttaactgatcagaggcccaatatca
gcagttaaaggtcatgtccaagttgggtgtaatgactcatgcttgtaatc
ccagcacttggaaggcagaggcaggtggatttctgagttcaaggccagcc
tggtctacagagtgagttccaggacagccagggctacacagagaaaccct
gtctcaaaaaacatcattaaaaaaaaaaaaagaaagaattggaggcttga
ctggcctacacagtgcatgacaggaccaagtgtctcaaaacatagtctca
ctatgtagccctgggtgtcattgaactcatagatctgcctgcctctgctt
cctgatggcttggactaaggcaggtaccagacctgttgtttggttttggc
ttttttttttttaaaaaaaacaatgttatgtagtccaggctagcctagta
actactatgtacactaggtagcccaggttggcttcacattctaggcagtc
tcttgtaaaaataacttgtattctcctgtttagtggttgtcagggaggct
tactgcctccgtctgctaaccgagacctggtcctggatgcttccagcctc
cttaccacctaatctaggtctagagagttttcagcctctgagacttactg
ctgaatatgctcaccctcctagttctttctgaatcttggtgactggatca
actcaggtgtctggctcaaactccctctcccacctcaatctggtgtctct
cagcctctgaattgctctgctttggccctcaaactttagcattcaattct
aatctttctggctcctcattctcttgctctttctgtcttcgtctgtgtct
agcgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_115023686_115024878
seq2: B6Ng01-087B20.b_43_1232 (reverse)

seq1  GTTTTGTAGCATATTGCATCAGGCAGTATGGAGGCCTGTGAT-TGATAAG  49
      ||||||||||   ||||||   ||||||| ||||||| |||| |||| ||
seq2  GTTTTGTAGCCATTTGCATACAGCAGTAT-GAGGCCT-TGATATGAT-AG  47

seq1  GTGCTGGGGTGAAGGTTCAGTCAGTGAGGTGCTTGCCGGGGGTAGGGGGT  99
      |||||| |||||||  ||||||||||| |||||||||| || || | | |
seq2  GTGCTGAGGTGAAG--TCAGTCAGTGAAGTGCTTGCCGAGGTTAAGAGAT  95

seq1  GGGGTGGAGTGGAGGCTGAGCTTGA-TCTCC-AGAACCCACG-TAAAAAT  146
        | | || || || |||||||||| ||||| ||| |||||| ||||| |
seq2  --GATTGATTGAAGCCTGAGCTTGATTCTCCAAGACCCCACGTTAAAATT  143

seq1  GCCCGG-TGTGATGACGTGTGCCTGCAGTTCTGGATCCGGTGGACAGAAG  195
      |||||| |||||||||||||||||||||||||| |||| ||| |||||||
seq2  GCCCGGTTGTGATGACGTGTGCCTGCAGTTCTGAATCC-GTGAACAGAAG  192

seq1  CAGCTGGGTCCCGGGGGATTGCTGGCCAGTCGGGCTGGCAACATTGCCAA  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTCCCGGAGGATTGCTGGCCAGTCGGGCTGGCAACATTGCCAA  242

seq1  ATCTAAGGTGGAGAAGCAGTTGAGGAAGATATCTGGATGTCACCCTTTGT  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTAAGGTGGAGAAGCAGTTGAGGAAGATTTCTGGATGTCACCCTTTGT  292

seq1  CTTCCACATGTACCCACATGGGTGAATACCCTCCTCTGTCAACACAAGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATGTACCCACATGGGTGAATACCCTCCTCTGTCAACACAAGAC  342

seq1  TATCCACTCCCCTCCCCAGCTGGGAACTGTAGGAAACACACCCATGACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTCCCCTCCCCAGCTGGGAACTGTAGGAAACACACCCATGACAT  392

seq1  TGGGGGCAGGAAGAAGTTCATCAGGGTAGATCTATTCTTGATTTAAGGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCAGGAAGAAGTTCATCAGGGTAGATCTATTCTTGATTTAAGGAC  442

seq1  ATATATTATGTTAGAACATGGTGCACACAGATAAACGTGAAGTAACGGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATGTTAGAACATGGTGCACACAGATAAACGTGAAGTAACGGTA  492

seq1  AGAATGAGCAGACAGTATTTAAGATACTGCATTACCATGCAGCAGTCTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCAGACAGTATTTAAGATACTGCATTACCATGCAGCAGTCTAG  542

seq1  GATAAACGCTGCGCTAGTGCTACCATGCAGCAGTCTAGGAACTGCATGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACGCTGCGCTAGTGCTACCATGCAGCAGTCTAGGAACTGCATGGC  592

seq1  CAGGAACATGTGACATAGGCAGAAAAGTTGTGAGTGTTATATCCCGTGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATGTGACATAGGCAGAAAAGTTGTGAGTGTTATATCCCGTGTC  642

seq1  TGTCTTACTGGACTGCGCGTGTTGTTTAAAACGGTTCCTAGAGTTCTGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACTGGACTGCGCGTGTTGTTTAAAACGGTTCCTAGAGTTCTGGA  692

seq1  TTTTACTTGCCAACTAAAATCTAGAAATGGAATTTTGGCAACCCCATAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGCCAACTAAAATCTAGAAATGGAATTTTGGCAACCCCATAGC  742

seq1  TCTGCAGTTTCATCTGAGACGCTAGTCTGGCCCCGCATACATGTTTTAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTTTCATCTGAGACGCTAGTCTGGCCCCGCATACATGTTTTAGC  792

seq1  ATGTATCTGCATGTAATAAGAAATAAAAAGGCAGTATAAAACAAGGTAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGCATGTAATAAGAAATAAAAAGGCAGTATAAAACAAGGTAAA  842

seq1  ATATTTCATTAGCAATGTAAATATTGATATATGGAAATAATATATACTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTAGCAATGTAAATATTGATATATGGAAATAATATATACTTT  892

seq1  TACTATAAGTAATATATATACACACACATACACATAACCTTTTTTGGGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAGTAATATATATACACACACATACACATAACCTTTTTTGGGGG  942

seq1  TATGTGTGACTGCCTTGCTATAGTTTGGGTACTCCCTAAGTCAACTAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGACTGCCTTGCTATAGTTTGGGTACTCCCTAAGTCAACTAGAC  992

seq1  GGGCCACGAGCTCACAGCAATCCCCCTGCCTCTTTCTCCCTAGTTCTAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACGAGCTCACAGCAATCCCCCTGCCTCTTTCTCCCTAGTTCTAGG  1042

seq1  ACTGCAGGCGTGTACCACCACATCCAGCTTTCTGTTTTTCTGTCGAAGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGCGTGTACCACCACATCCAGCTTTCTGTTTTTCTGTCGAAGGC  1092

seq1  TGAGTCTTACTTCTGGTGTCTTTTGGGCACCGTGTGGTAACTGGGCATGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTACTTCTGGTGTCTTTTGGGCACCGTGTGGTAACTGGGCATGC  1142

seq1  TGGCTTATCAGATTTCCCTGGGATGCCTCTGTGTAGCGGGCAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATCAGATTTCCCTGGGATGCCTCTGTGTAGCGGGCAGAATTC  1190

seq1: chr9_114836484_114837359
seq2: B6Ng01-087B20.g_69_945

seq1  GAATTCCAAATGTATCCTGAGGTATGTCTGAAATTAGGGAGTGATCGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGTATCCTGAGGTATGTCTGAAATTAGGGAGTGATCGGTA  50

seq1  GAGATAGGGGAGAGAGCTTCCTAGCCCTTAGTGTCAGCAGCCACGACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGGGAGAGAGCTTCCTAGCCCTTAGTGTCAGCAGCCACGACACC  100

seq1  CTAGACTGGGGCCACCCTGAAGTCCTTAACTGATCAGAGGCCCAATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGGGGCCACCCTGAAGTCCTTAACTGATCAGAGGCCCAATATCA  150

seq1  GCAGTTAAAGGTCATGTCCAAGTTGGGTGTAATGACTCATGCTTGTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAAGGTCATGTCCAAGTTGGGTGTAATGACTCATGCTTGTAATC  200

seq1  CCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCC  250

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  300

seq1  GTCTCAAAAAACATCATTAAAAAAAAAAAAAGAAAGAATTGGAGGCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAACATCATTAAAAAAAAAAAAAGAAAGAATTGGAGGCTTGA  350

seq1  CTGGCCTACACAGTGCATGACAGGACCAAGTGTCTCAAAACATAGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTACACAGTGCATGACAGGACCAAGTGTCTCAAAACATAGTCTCA  400

seq1  CTATGTAGCCCTGGGTGTCATTGAACTCATAGATCTGCCTGCCTCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGCCCTGGGTGTCATTGAACTCATAGATCTGCCTGCCTCTGCTT  450

seq1  CCTGATGGCTTGGACTAAGGCAGGTACCAGACCTGTTGTTTGGTTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGCTTGGACTAAGGCAGGTACCAGACCTGTTGTTTGGTTTTGGC  500

seq1  TTTTTTTTTTTTAAAAAAAACAATGTTATGTAGTCCAGGCTAGCCTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAAAAAAACAATGTTATGTAGTCCAGGCTAGCCTAGTA  550

seq1  ACTACTATGTACACTAGGTAGCCCAGGTTGGCTTCACATTCTAGGCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATGTACACTAGGTAGCCCAGGTTGGCTTCACATTCTAGGCAGTC  600

seq1  TCTTGTAAAAATAACTTGTATTCTCCTGTTTAGTGGTTGTCAGGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAAAATAACTTGTATTCTCCTGTTTAGTGGTTGTCAGGGAGGCT  650

seq1  TACTGCCTCCGTCTGCTAACCGAGACCTGGTCCTGGATGCTTCCAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTCCGTCTGCTAACCGAGACCTGGTCCTGGATGCTTCCAGCCTC  700

seq1  CTTACCACCTAATCTAGGTCTAGAGAGTTTTCAGCCTCTGAGACTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACCTAATCTAGGTCTAGAGAGTTTTCAGCCTCTGAGACTTACTG  750

seq1  CTGAATATGCTCACCCTCCTAGTTCTTTCTGAATCTTGGTGACTGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATGCTCACCCTCCTAGTTCTTTCTGAATCTTGGTGACTGGATCA  800

seq1  ACTCAGGTGTTCTGGCTCAAACT-CCTCTCCCACCTCAATCTGGTGTCTC  849
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  ACTCAGGTG-TCTGGCTCAAACTCCCTCTCCCACCTCAATCTGGTGTCTC  849

seq1  TCAGCCTCTGAATTGCTCTGC-TTGGCC  876
      ||||||||||||||||||||| ||||||
seq2  TCAGCCTCTGAATTGCTCTGCTTTGGCC  877