BAC Information

Click to search

BAC

Clone NameB6Ng01-087M15
Chromosome9 (Build37)
Map Location 43,897,214 - 44,085,389
singlet/doubletdoublet
Overlap geneUsp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4
Upstream geneArhgef12, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1
Downstream geneMizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M15.bB6Ng01-087M15.g
ACCDH900816DH900817
length7251,107
definitionDH900816|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M15, 5' end.DH900817|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,897,214 - 43,897,938)(44,084,287 - 44,085,389)
sequence
gaattcaaagagtgcccagggtctggctggtcttcgaaaccttgggaaca
cggtaagttcctcccaactcacctcttccctgaagcccttccctcctctc
ttgaatgggatagttttacagagtcccctcctggctccagctagcttcct
atcctatagggcaatcagcacctgcccttcctggctggggtttcagtgaa
ttgtggggctctgtctcacccgcccccagcaggaagcactgctaaaagga
agttgcccttgtcacttcgagcctgctgctctcctggatcttcctcctga
ttcctgtcacttcccacccactgctgaccagtgtgcccacacccctttgt
acacctcagtaggaaggagccaattacagggccttcccccatacttgcct
cactcggccctgccttcactcaggaaggaggagcctggagctgtgagaga
gttcattttgggtagaagagagagagagaacctttaggtaacagaagtgc
tgggtaaggggcactaccccatcacatcacagtgttgttagttagctttc
ccccacgatagatacatgagagaaatcaacctaataaagatggtgtgttg
ggcttgcttactggctctgttgctttgggcttgtgacaaggcagaaggca
caggtacagcaaagcaaaaccattcacttcatggccaggatacaaagtgg
ggggggagggggcagtgggggaaga
gaattcaagtccagccagagctacagtgtgactagctatctcaaaataaa
taaatgaagaggtggccagaataacagaatgacaaatgtctctgagtcct
aggcagcagagagtgcatagggtctagagctttacttatttgtaaccagt
ttgtctttgcttccatgaccccacctggaaaatggaatggcaacagcgtc
cttcttcagaattaaatgtgactgcctataaagttgaatttctaatttta
atttctgactttctttgagacagggtctctctgcatagccctggctggcc
tcactatgtagaccagactggcctcgaactcattgcttgcctctgcttcc
tgagtactgggagttagtgtgcaatgccatacctggcaatttttaaatat
gtatttatttatcttgtgtgtgtgtgtgtgtacacatctgtgccagagtc
tatgtaaggaggtcagaggggagcatgcggaattcagtcctcccccggca
tgtggattctcaggattgaacactggcagacttggcgagcaagcgccttt
acctgctgagccaacttgctggctgcctataatgtttttagaagagatcg
tgtcctagagataccagctggcagttgttcagcacattaccacctcgctt
gaagcttcagggccaccaataagcctttgtgcaaatcacagaaaaagtgt
tcctttatctaggtgtggccaggcacaccaataatcccagcccttggaag
gtgaagcaggatggttagggattcaaggtcacccatggctacctacagag
tttgagaccagaatgggctatgagagacacctggctcaaacaaacacaca
aacagcaaaaggggaggcggatgctgctctgtgctgtgtacagagcttag
agagagagatacaagcgacaccttgggcctctggatgtctctgtctggga
gttgtgagcctacccattgtgttctgtatcattgtagctagagactctct
cctctttctctctctctcttttcattccctaatttatttagattattttc
tggaacaaggtctccaatttgttaagtcaggactgtactgggaactggac
tagatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43897214_43897938
seq2: B6Ng01-087M15.b_47_771

seq1  GAATTCAAAGAGTGCCCAGGGTCTGGCTGGTCTTCGAAACCTTGGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGTGCCCAGGGTCTGGCTGGTCTTCGAAACCTTGGGAACA  50

seq1  CGGTAAGTTCCTCCCAACTCACCTCTTCCCTGAAGCCCTTCCCTCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAGTTCCTCCCAACTCACCTCTTCCCTGAAGCCCTTCCCTCCTCTC  100

seq1  TTGAATGGGATAGTTTTACAGAGTCCCCTCCTGGCTCCAGCTAGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGGATAGTTTTACAGAGTCCCCTCCTGGCTCCAGCTAGCTTCCT  150

seq1  ATCCTATAGGGCAATCAGCACCTGCCCTTCCTGGCTGGGGTTTCAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATAGGGCAATCAGCACCTGCCCTTCCTGGCTGGGGTTTCAGTGAA  200

seq1  TTGTGGGGCTCTGTCTCACCCGCCCCCAGCAGGAAGCACTGCTAAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGCTCTGTCTCACCCGCCCCCAGCAGGAAGCACTGCTAAAAGGA  250

seq1  AGTTGCCCTTGTCACTTCGAGCCTGCTGCTCTCCTGGATCTTCCTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCTTGTCACTTCGAGCCTGCTGCTCTCCTGGATCTTCCTCCTGA  300

seq1  TTCCTGTCACTTCCCACCCACTGCTGACCAGTGTGCCCACACCCCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCACTTCCCACCCACTGCTGACCAGTGTGCCCACACCCCTTTGT  350

seq1  ACACCTCAGTAGGAAGGAGCCAATTACAGGGCCTTCCCCCATACTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAGTAGGAAGGAGCCAATTACAGGGCCTTCCCCCATACTTGCCT  400

seq1  CACTCGGCCCTGCCTTCACTCAGGAAGGAGGAGCCTGGAGCTGTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGCCCTGCCTTCACTCAGGAAGGAGGAGCCTGGAGCTGTGAGAGA  450

seq1  GTTCATTTTGGGTAGAAGAGAGAGAGAGAACCTTTAGGTAACAGAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTGGGTAGAAGAGAGAGAGAGAACCTTTAGGTAACAGAAGTGC  500

seq1  TGGGTAAGGGGCACTACCCCATCACATCACAGTGTTGTTAGTTAGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGGGGCACTACCCCATCACATCACAGTGTTGTTAGTTAGCTTTC  550

seq1  CCCCACGATAGATACATGAGAGAAATCAACCTAATAAAGATGGTGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGATAGATACATGAGAGAAATCAACCTAATAAAGATGGTGTGTTG  600

seq1  GGCTTGCTTACTGGCTCTGTTGCTTTGGGCTTGTGACAAGGCAGAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTTACTGGCTCTGTTGCTTTGGGCTTGTGACAAGGCAGAAGGCA  650

seq1  CAGGTACAGCAAAGCAAAACCATTCACTTCATGGCCAGGATACAAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACAGCAAAGCAAAACCATTCACTTCATGGCCAGGATACAAAGTGG  700

seq1  GGGGGGAGGGGGCAGTGGGGGAAGA  725
      |||||||||||||||||||||||||
seq2  GGGGGGAGGGGGCAGTGGGGGAAGA  725

seq1: chr9_44084287_44085389
seq2: B6Ng01-087M15.g_70_1176 (reverse)

seq1  TGATCTAGT-CAGTT-CCAGTACAGTCCTGACTT-ACATATT-GAGGCCC  46
      ||||||||| ||||| |||||||||||||||||| ||| ||| ||| || 
seq2  TGATCTAGTCCAGTTCCCAGTACAGTCCTGACTTAACAAATTGGAGACCT  50

seq1  TGTTTCAG-AAATAATCTAAATAAATAAGAGAAATGAGAGAGAGAGAGAG  95
      |||| ||| ||||||||||||||||| || | ||||| | ||||||||||
seq2  TGTTCCAGAAAATAATCTAAATAAATTAG-GGAATGA-AAAGAGAGAGAG  98

seq1  AGAGAGAGGGAGAGAGTCTCTAGCTACAGTGATACAGAACACAATGTGTA  145
      ||| ||| |||||||||||||||||||| ||||||||||||||||| |||
seq2  AGAAAGA-GGAGAGAGTCTCTAGCTACAATGATACAGAACACAATGGGTA  147

seq1  GGCTCACAACTCCCAGACAGAGACATCCAGAGG-CCAAGGTGTCGCTTGT  194
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTCACAACTCCCAGACAGAGACATCCAGAGGCCCAAGGTGTCGCTTGT  197

seq1  ATCTCTCTCTCTAAGCTCTGTACACAGCACAGAGCAGCATCCGCCTCCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCTCTAAGCTCTGTACACAGCACAGAGCAGCATCCGCCTCCCC  247

seq1  TTTTGCTGTTTGTGTGTTTGTTTGAGCCAGGTGTCTCTCATAGCCCATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTTGTGTGTTTGTTTGAGCCAGGTGTCTCTCATAGCCCATTC  297

seq1  TGGTCTCAAACTCTGTAGGTAGCCATGGGTGACCTTGAATCCCTAACCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAAACTCTGTAGGTAGCCATGGGTGACCTTGAATCCCTAACCAT  347

seq1  CCTGCTTCACCTTCCAAGGGCTGGGATTATTGGTGTGCCTGGCCACACCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCACCTTCCAAGGGCTGGGATTATTGGTGTGCCTGGCCACACCT  397

seq1  AGATAAAGGAACAC-TTTTCTGTGATTTGCACAAAGGCTTATTGGTGGCC  443
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGAACACTTTTTCTGTGATTTGCACAAAGGCTTATTGGTGGCC  447

seq1  CTGAAGCTTCAAGCGAGGTGGTAATGTGCTGAACAACTGCCAGCTGGTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTCAAGCGAGGTGGTAATGTGCTGAACAACTGCCAGCTGGTAT  497

seq1  CTCTAGGACACGATCTCTTCTAAAAACATTATAGGCAGCCAGCAAGTTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGACACGATCTCTTCTAAAAACATTATAGGCAGCCAGCAAGTTGG  547

seq1  CTCAGCAGGTAAAGGCGCTTGCTCGCCAAGTCTGCCAGTGTTCAATCCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGTAAAGGCGCTTGCTCGCCAAGTCTGCCAGTGTTCAATCCTG  597

seq1  AGAATCCACATGCCGGGGGAGGACTGAATTCCGCATGCTCCCCTCTGACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCACATGCCGGGGGAGGACTGAATTCCGCATGCTCCCCTCTGACC  647

seq1  TCCTTACATAGACTCTGGCACAGATGTGTACACACACACACACACAAGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACATAGACTCTGGCACAGATGTGTACACACACACACACACAAGAT  697

seq1  AAATAAATACATATTTAAAAATTGCCAGGTATGGCATTGCACACTAACTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACATATTTAAAAATTGCCAGGTATGGCATTGCACACTAACTC  747

seq1  CCAGTACTCAGGAAGCAGAGGCAAGCAATGAGTTCGAGGCCAGTCTGGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTCAGGAAGCAGAGGCAAGCAATGAGTTCGAGGCCAGTCTGGTC  797

seq1  TACATAGTGAGGCCAGCCAGGGCTATGCAGAGAGACCCTGTCTCAAAGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGAGGCCAGCCAGGGCTATGCAGAGAGACCCTGTCTCAAAGAA  847

seq1  AGTCAGAAATTAAAATTAGAAATTCAACTTTATAGGCAGTCACATTTAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAATTAAAATTAGAAATTCAACTTTATAGGCAGTCACATTTAAT  897

seq1  TCTGAAGAAGGACGCTGTTGCCATTCCATTTTCCAGGTGGGGTCATGGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAAGGACGCTGTTGCCATTCCATTTTCCAGGTGGGGTCATGGAA  947

seq1  GCAAAGACAAACTGGTTACAAATAAGTAAAGCTCTAGACCCTATGCACTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACAAACTGGTTACAAATAAGTAAAGCTCTAGACCCTATGCACTC  997

seq1  TCTGCTGCCTAGGACTCAGAGACATTTGTCATTCTGTTATTCTGGCCACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCTAGGACTCAGAGACATTTGTCATTCTGTTATTCTGGCCACC  1047

seq1  TCTTCATTTATTTATTTTGAGATAGCTAGTCACACTGTAGCTCTGGCTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTATTTATTTTGAGATAGCTAGTCACACTGTAGCTCTGGCTGG  1097

seq1  ACTTGAATTC  1103
      ||||||||||
seq2  ACTTGAATTC  1107