BAC Information

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BAC

Clone NameB6Ng01-088G04
Chromosome9 (Build37)
Map Location 12,147,290 - 12,148,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989
Downstream geneLOC622505, LOC100039680, LOC665285, LOC100039729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G04.bB6Ng01-088G04.g
ACCDH901249DH901250
length1,2781,062
definitionDH901249|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G04, 5' end.DH901250|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagttcctccagtaaaaagacaaaggttaatagaatggatgtaaa
atcaggatccatcattctgctgcatacaagaggcacacctcagccataaa
agtagacattatctcagagtaaagggctagaaagaagttattgaagcaaa
gaacataagaagtaagctggagtaggcattctaatatataataaaataga
ttttcaacaaaattaattaattttgattaagatatgggggacactacata
ctcatcaaaggaaaaatctacaaagatgatgtctcaaatatgaatatcta
tgccccaagtgcaatggcacccaaaactgtaaaagaaacattactaaagc
ttaaattgcacatcaaacctagcacataaatatagggatatttcaacccc
cactctcaccaattgataagtcacccaaagaaaaactaaacagagaaatc
atgaaattaaatgacattgtgaatcaaatggacttaacagacatccatag
aatatttcacccaaacacaaaataatataacttcttttcagtaactactt
ctccaaagtttaccatatagtcagtcgcaaagcaggcctgaacagataca
ggaaaattgaaataacaccttgtaacttatcaaaccaccatggattaaag
gtggacttaacaacaacagaaacacaagatagcctatatactcacagaaa
ttgaacaattctatactcaatgatctctgggtcaggaacgaaataaagaa
attaaagactctctagaattcaatgaaaatgacactacaacacaacttac
ccaaatttatgggacacaatgaaagcagtgctaagagggagttcatagca
ctaagaacttccataaagaaattatagaaagttctcataccagaaattta
aaaatatatcagaaagctctagaaacaaaacaggggaggaataaaagcag
gaaataatcaaaagtagggatgaatcaatcagttagaaacaaagatacca
tctaccaaattaaatcaaattacataagctattaagtatcaaattacaaa
aaccctgtaccactaacaaaatacttgtagtcatcaaaatctttcacaaa
aaccacaagttcagatgttttttattgcagaatatatcagacttttaaac
ataattatcaaactcttcccaaaataaaaaacagaagacctgtcaactca
tttttaggacaggttccagatgcctataacagttcacaggaggagtccga
cagatttctttatagaaaatattgtctg
gaattcaccatccaagatttcaaaacagatatcttatgcaaagaaacaga
cctgactggaatcctttgtcattttttttttttgaaaagattttttgcat
caaaagagtctgatggatctatggcaagtcttgaatacactatgcagctg
aggctggtcttcaactcctgattctcaattatgcatctcccgggggttag
aatttcaaagtgtgcattactatgctcagttcctgcagtgaagacaacca
aattcagcttgatatacatgtaggaacagaatttgtgaactgtgctacat
tgttatttttgtaaatttatatttaaaaccagggaaatgttataacttag
atttagggttagggttttccacctgggttaggtttttataacttgatttg
cattgaaacttgaaaggggtagagataagaaattactccatcaatactga
ctgtgtatgattaggtaagaacatttataaatatgaaaattatttagagc
tgagaagatggttcagttaaaaactacttagcattcaaaatgagcattca
acatgagaacctaagatgaatcaacagaactcgcagaatcactgggttaa
caaaaactagagagagagttctgtgattcagagcacttcctgtttttcca
gaagacttggattcaattccctgcatccaaagggatgctcacaaccagtt
ccaggtgatccaaaatcctattctgacctccttggtcaataggtatatac
atggtactaataaaggcaggtaggacattaatgcacataaataaagaaga
ccagcagtctcaactaacccagaccccagggagctcctagagactgaggc
accaatgaagaacacataccggctggtccgaggcccctggcacatatgta
gcagaggtctacgtggtctgacctccgtggaagatatatttaatcctgga
gtgccttggtcttagaaagggggagtctgtagcaccctctcagaggcaag
aggaagaagaatgggatgaggaaatgtgggaagaagacgaaggagggtca
tgaccacaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12147290_12148358
seq2: B6Ng01-088G04.g_67_1128

seq1  GAATTCACCATCCAAGATTTCAAAACAGATATCTTATGCAAAGAAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCCAAGATTTCAAAACAGATATCTTATGCAAAGAAACAGA  50

seq1  CCTGACTGGAATCCTTTGTCATTTTTTTTTTTTGAAAAGATTTTTTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGGAATCCTTTGTCATTTTTTTTTTTTGAAAAGATTTTTTGCAT  100

seq1  CAAAAGAGTCTGATGGATCTATGGCAAGTCTTGAATACACTATGCAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGTCTGATGGATCTATGGCAAGTCTTGAATACACTATGCAGCTG  150

seq1  AGGCTGGTCTTCAACTCCTGATTCTCAATTATGCATCTCCCGGGGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTCTTCAACTCCTGATTCTCAATTATGCATCTCCCGGGGGTTAG  200

seq1  AATTTCAAAGTGTGCATTACTATGCTCAGTTCCTGCAGTGAAGACAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGTGTGCATTACTATGCTCAGTTCCTGCAGTGAAGACAACCA  250

seq1  AATTCAGCTTGATATACATGTAGGAACAGAATTTGTGAACTGTGCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTGATATACATGTAGGAACAGAATTTGTGAACTGTGCTACAT  300

seq1  TGTTATTTTTGTAAATTTATATTTAAAACCAGGGAAATGTTATAACTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTGTAAATTTATATTTAAAACCAGGGAAATGTTATAACTTAG  350

seq1  ATTTAGGGTTAGGGTTTTCCACCTGGGTTAGGTTTTTATAACTTGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGTTAGGGTTTTCCACCTGGGTTAGGTTTTTATAACTTGATTTG  400

seq1  CATTGAAACTTGAAAGGGGTAGAGATAAGAAATTACTCCATCAATACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAACTTGAAAGGGGTAGAGATAAGAAATTACTCCATCAATACTGA  450

seq1  CTGTGTATGATTAGGTAAGAACATTTATAAATATGAAAATTATTTAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGATTAGGTAAGAACATTTATAAATATGAAAATTATTTAGAGC  500

seq1  TGAGAAGATGGTTCAGTTAAAAACTACTTAGCATTCAAAATGAGCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGATGGTTCAGTTAAAAACTACTTAGCATTCAAAATGAGCATTCA  550

seq1  ACATGAGAACCTAAGATGAATCAACAGAACTCGCAGAATCACTGGGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAACCTAAGATGAATCAACAGAACTCGCAGAATCACTGGGTTAA  600

seq1  CAAAAACTAGAGAGAGAGTTCTGTGATTCAGAGCACTTCCTGTTTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTAGAGAGAGAGTTCTGTGATTCAGAGCACTTCCTGTTTTTCCA  650

seq1  GAAGACTTGGATTCAATTCCCTGCATCCAAAGGGATGCTCACAACCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTGGATTCAATTCCCTGCATCCAAAGGGATGCTCACAACCAGTT  700

seq1  CCAGGTGATCCAAAATCCTATTCTGACCTCCTTGGTCAATAGGTATATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGATCCAAAATCCTATTCTGACCTCCTTGGTCAATAGGTATATAC  750

seq1  ATGGTACTAATAAAGGCAGGTAGGACATTAATGCACATAAATAAAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTAATAAAGGCAGGTAGGACATTAATGCACATAAATAAAGAAGA  800

seq1  CCAGCAGTCTCAACTAACCCAGACCCCAGGGAGCTCCTAGAGACTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTCTCAACTAACCCAGACCCCAGGGAGCTCCTAGAGACTGAGGC  850

seq1  ACCAATGAAGAACACATACCGGCTGGTCCGAGGCCCCTGGCACATATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAAGAACACATACCGGCTGGTCCGAGGCCCCTGGCACATATGTA  900

seq1  GCAGAGGTCTACGTGGTCTGACCTCCGTGGAAGATATATTTAATCCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTCTACGTGGTCTGACCTCCGTGGAAGATATATTTAATCCTGGA  950

seq1  GTGCCTTGGGTCTTAGGAAAGGGGGAGGTCTGTAGCACCCTCTCAGAGGC  1000
      ||||||| ||||||| |||||||||| |||||||||||||||||||||||
seq2  GTGCCTT-GGTCTTA-GAAAGGGGGA-GTCTGTAGCACCCTCTCAGAGGC  997

seq1  AAAGAGGAAGAAGAATGGGATGAGGAAATGTGGGAAGGAAGACGGAAGGA  1050
       ||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  -AAGAGGAAGAAGAATGGGATGAGGAAATGTGGGAA-GAAGAC-GAAGGA  1044

seq1  GGGTCAATGACCAGAATGT  1069
      ||||| ||||||| |||||
seq2  GGGTC-ATGACCACAATGT  1062