BAC Information

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BAC

Clone NameB6Ng01-088G15
Chromosome9 (Build37)
Map Location 91,302,226 - 91,426,375
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G15.bB6Ng01-088G15.g
ACCDH901270DH901271
length1,1261,218
definitionDH901270|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G15, 5' end.DH901271|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,425,247 - 91,426,375)(91,302,226 - 91,303,488)
sequence
gaattctttatgtcacaagccatgaacactactgtttaatgtacactcat
gctccatctgtttccgtttccattactcgcatcccctaaccagtttctca
tgcacactttccagctccatgctgtgttttctatttattgaatacatttc
tcacttcaacatttttccacctgagctggcagttgtggcttttatggctg
tacacatgcaggtctccttagattatgaacttcatattttttcatttgcc
tcatgcttcggttctccagcttagtaggccctaaaatgtgcaaattgaga
agtggtttgtagcagccattgctattcaaggccattggcttgtcatcaat
tagattaaaacattggtttacaaaaaaataatgtttctctttacttcata
aaaaataaaacactggcaaaagggaacccagctgtgctaagaagcgaatt
actttatgtgggtaagcaaacatcttccggtcaggactgcgatgtattat
tcaagtgcactttactacatcagttttgaagtaatgtgaatgttatatgt
tatttctaagtaaaataagcaagtggaagagtctaaagagttgacttatt
tttatttctttttcttcttcaaacatgcaagtatctagctgcattgtttt
tttttaaatgctatctgcagttttgtgattataagtaagctgagtgacaa
agtctcatttttataatttctcaaaatgttatatgtaaagaaacttacaa
agaatcccggatttctgaactttataacagttcaaactactcaaaatttg
atgtgggcattgattttaacaataagagaacataggaaaaggcatcaata
tattttcttctatataatcaataacataaaaaagcatatattttaggaaa
cccaaaaacactttgtactagagtttattaactagtaaagttagaagcat
tttcattttcctgctatgtatctattgtacacggcactatgcaatgatat
aattatacagtatgtactatacattgagcatacctccataatcttttaac
cctcttctcttctcctctacaagttcttcttgttctcctgaacagtttca
tttctattttaactcatattaaatac
gaattccaggggtcttaaaataaaagtacatgtaattgatgaagggaaga
aaattaagggggccactccctttcttaataatctctccaaagaatcctcc
tacctggggatcagagtacatcttaattaacagatctgaatttcctttaa
cttattcttgttatctaattagcaatatgacaggtgtaatcctcttcaaa
atagttcgttaagatcgttggaaacaaagataaatggtaaactgtatatt
ttggctttggtttagatatgtaactagccaaatgtactttgtatattgag
ttcggagaggtaactgcccatttgattacctgtataataatgttaactgc
ttctttttcatttaattcttccttcctgttttttatgtttctttttaaga
cagggtctcactttgtagctttggctggcactgtgtagaagaggctgatc
ttgaactcaaagagatctgcctgtctctgcctcctgaatgctggaatcaa
aggcatgtgccaccacacccactggcactttatagtttcttaaaattatt
ttaagtttaagtgattctctctctctctctctctctctctctctctctct
ctcaaacacacacacacacacactcacacacacacgcacacacacacaca
tctttcaatatcttccaaattgtacatgttaaggctttatatcctgagct
agtctatagtggtatggagaaggcatggtaacaatgtttccagcctttgt
ttttgtggttctgttcttgtactggatagtatttgtttggatataagaat
gaattggagctaaaatccataaactgtgatgatatattagaaagtttgat
tgttataaataatttagaataaaatgtctcatttgtttagttgatataga
aatatataatatattgcatcaatttagaaatatctttgtacatataaaac
atttcacacatatcctagccatcataattcaatacttaatcattcatcct
ttacttattcaatttggtgactcaatggatatgagagatggtcattcctg
tctacggcagtaggtctagtgccttttttgaccaacgtaaataaattaat
ttatatatgaactttatgtggggtttatttaagcatccagaaactactct
tttggttctgatgtacacatatttatcgaattgttattatgatcggatta
tacgggggagagatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91425247_91426375
seq2: B6Ng01-088G15.b_41_1166 (reverse)

seq1  GTATTTATATATGAGTTTAAAATAGAAATGGAACTGTCAGGGAGAACAGG  50
      ||||||| ||||||| |||||||||||||| ||||||   |||||||| |
seq2  GTATTTA-ATATGAG-TTAAAATAGAAATGAAACTGTTCAGGAGAACAAG  48

seq1  AAGAACTAGTAGAAGGGAAGAAGAG-AGAGGGTTAAAAGA-TATGGAGGT  98
      ||||||| |||||   | ||||||| |||||||||||||| |||||||| 
seq2  AAGAACTTGTAGA---GGAGAAGAGAAGAGGGTTAAAAGATTATGGAGG-  94

seq1  TATGCTCAATGTATAGTACATACTGTATAATTATATCATTGCATAGTGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAATGTATAGTACATACTGTATAATTATATCATTGCATAGTGCC  144

seq1  GTGTACAATAGATACATAGCAGGAAAATGAAAATGCTTCTAACTTTACTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAATAGATACATAGCAGGAAAATGAAAATGCTTCTAACTTTACTA  194

seq1  GTTAATAAACTCTAGTAC-AAGTGTTTTTGGGTTTCCTAAAATATATGCT  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTAATAAACTCTAGTACAAAGTGTTTTTGGGTTTCCTAAAATATATGCT  244

seq1  TTTTTATGTTATTGATTATATAGAAGAAAATATATTGATGCCTTTTCCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTATTGATTATATAGAAGAAAATATATTGATGCCTTTTCCTA  294

seq1  TGTTCTCTTATTGTTAAAATCAATGCCCACATCAAATTTTGAGTAGTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTATTGTTAAAATCAATGCCCACATCAAATTTTGAGTAGTTTG  344

seq1  AACTGTTATAAAGTTCAGAAATCCGGGATTCTTTGTAAGTTTCTTTACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATAAAGTTCAGAAATCCGGGATTCTTTGTAAGTTTCTTTACAT  394

seq1  ATAACATTTTGAGAAATTATAAAAATGAGACTTTGTCACTCAGCTTACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTGAGAAATTATAAAAATGAGACTTTGTCACTCAGCTTACTT  444

seq1  ATAATCACAAAACTGCAGATAGCATTTAAAAAAAAACAATGCAGCTAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACAAAACTGCAGATAGCATTTAAAAAAAAACAATGCAGCTAGAT  494

seq1  ACTTGCATGTTTGAAGAAGAAAAAGAAATAAAAATAAGTCAACTCTTTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGTTTGAAGAAGAAAAAGAAATAAAAATAAGTCAACTCTTTAG  544

seq1  ACTCTTCCACTTGCTTATTTTACTTAGAAATAACATATAACATTCACATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCACTTGCTTATTTTACTTAGAAATAACATATAACATTCACATT  594

seq1  ACTTCAAAACTGATGTAGTAAAGTGCACTTGAATAATACATCGCAGTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAACTGATGTAGTAAAGTGCACTTGAATAATACATCGCAGTCCT  644

seq1  GACCGGAAGATGTTTGCTTACCCACATAAAGTAATTCGCTTCTTAGCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGAAGATGTTTGCTTACCCACATAAAGTAATTCGCTTCTTAGCACA  694

seq1  GCTGGGTTCCCTTTTGCCAGTGTTTTATTTTTTATGAAGTAAAGAGAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCCCTTTTGCCAGTGTTTTATTTTTTATGAAGTAAAGAGAAAC  744

seq1  ATTATTTTTTTGTAAACCAATGTTTTAATCTAATTGATGACAAGCCAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTGTAAACCAATGTTTTAATCTAATTGATGACAAGCCAATG  794

seq1  GCCTTGAATAGCAATGGCTGCTACAAACCACTTCTCAATTTGCACATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAATAGCAATGGCTGCTACAAACCACTTCTCAATTTGCACATTTT  844

seq1  AGGGCCTACTAAGCTGGAGAACCGAAGCATGAGGCAAATGAAAAAATATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTACTAAGCTGGAGAACCGAAGCATGAGGCAAATGAAAAAATATG  894

seq1  AAGTTCATAATCTAAGGAGACCTGCATGTGTACAGCCATAAAAGCCACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATAATCTAAGGAGACCTGCATGTGTACAGCCATAAAAGCCACAA  944

seq1  CTGCCAGCTCAGGTGGAAAAATGTTGAAGTGAGAAATGTATTCAATAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTCAGGTGGAAAAATGTTGAAGTGAGAAATGTATTCAATAAAT  994

seq1  AGAAAACACAGCATGGAGCTGGAAAGTGTGCATGAGAAACTGGTTAGGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACAGCATGGAGCTGGAAAGTGTGCATGAGAAACTGGTTAGGGG  1044

seq1  ATGCGAGTAATGGAAACGGAAACAGATGGAGCATGAGTGTACATTAAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGTAATGGAAACGGAAACAGATGGAGCATGAGTGTACATTAAACA  1094

seq1  GTAGTGTTCATGGCTTGTGACATAAAGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  GTAGTGTTCATGGCTTGTGACATAAAGAATTC  1126

seq1: chr9_91302226_91303488
seq2: B6Ng01-088G15.g_69_1286

seq1  GAATTCCAGGGGTCTTAAAATAAAAGTACATGTAATTGATGAAGGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGTCTTAAAATAAAAGTACATGTAATTGATGAAGGGAAGA  50

seq1  AAATTAAGGGGGCCACTCCCTTTCTTAATAATCTCTCCAAAGAATCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGGGGGCCACTCCCTTTCTTAATAATCTCTCCAAAGAATCCTCC  100

seq1  TACCTGGGGATCAGAGTACATCTTAATTAACAGATCTGAATTTCCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGATCAGAGTACATCTTAATTAACAGATCTGAATTTCCTTTAA  150

seq1  CTTATTCTTGTTATCTAATTAGCAATATGACAGGTGTAATCCTCTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTGTTATCTAATTAGCAATATGACAGGTGTAATCCTCTTCAAA  200

seq1  ATAGTTCGTTAAGATCGTTGGAAACAAAGATAAATGGTAAACTGTATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCGTTAAGATCGTTGGAAACAAAGATAAATGGTAAACTGTATATT  250

seq1  TTGGCTTTGGTTTAGATATGTAACTAGCCAAATGTACTTTGTATATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGGTTTAGATATGTAACTAGCCAAATGTACTTTGTATATTGAG  300

seq1  TTCGGAGAGGTAACTGCCCATTTGATTACCTGTATAATAATGTTAACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGAGGTAACTGCCCATTTGATTACCTGTATAATAATGTTAACTGC  350

seq1  TTCTTTTTCATTTAATTCTTCCTTCCTGTTTTTTATGTTTCTTTTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCATTTAATTCTTCCTTCCTGTTTTTTATGTTTCTTTTTAAGA  400

seq1  CAGGGTCTCACTTTGTAGCTTTGGCTGGCACTGTGTAGAAGAGGCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCACTTTGTAGCTTTGGCTGGCACTGTGTAGAAGAGGCTGATC  450

seq1  TTGAACTCAAAGAGATCTGCCTGTCTCTGCCTCCTGAATGCTGGAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAAAGAGATCTGCCTGTCTCTGCCTCCTGAATGCTGGAATCAA  500

seq1  AGGCATGTGCCACCACACCCACTGGCACTTTATAGTTTCTTAAAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTGCCACCACACCCACTGGCACTTTATAGTTTCTTAAAATTATT  550

seq1  TTAAGTTTAAGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAAGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  600

seq1  CTCAAACACACACACACACACACTCACACACACACGCACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACACACACACACACACTCACACACACACGCACACACACACACA  650

seq1  TCTTTCAATATCTTCCAAATTGTACATGTTAAGGCTTTATATCCTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAATATCTTCCAAATTGTACATGTTAAGGCTTTATATCCTGAGCT  700

seq1  AGTCTATAGTGGTATGGAGAAGGCATGGTAACAATGTTTCCAGCCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATAGTGGTATGGAGAAGGCATGGTAACAATGTTTCCAGCCTTTGT  750

seq1  TTTTGTGGTTCTGTTCTTGTACTGGATAGTATTTGTTTGGATATAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTTCTGTTCTTGTACTGGATAGTATTTGTTTGGATATAAGAAT  800

seq1  GAATTGGAGCTAAAATCCATAACCTGTGATGATATATTAGAAAGTTTGAT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATTGGAGCTAAAATCCATAAACTGTGATGATATATTAGAAAGTTTGAT  850

seq1  TGTTATAAAATTAATTTAGTAATAAAATGTTCTCATTTGTTTAGTTTGAT  900
      |||||||||  |||||||| ||||||||| |||||||||||||| |||||
seq2  TGTTATAAA--TAATTTAG-AATAAAATG-TCTCATTTGTTTAG-TTGAT  895

seq1  ATAGAAATATATAATATAATGCATCAATTTAGAAAATATCTTTGTACTAT  950
      |||||||||||||||||| ||||||||||||| |||||||||||||| ||
seq2  ATAGAAATATATAATATATTGCATCAATTTAG-AAATATCTTTGTAC-AT  943

seq1  ATAAAACATTTTCACACATATCCTAGCCATCAATAATTCAAATACTTAAT  1000
      |||||||| |||||||||||||||||||||| ||||||| ||||||||||
seq2  ATAAAACA-TTTCACACATATCCTAGCCATC-ATAATTC-AATACTTAAT  990

seq1  CCATTCATTCATTTACTTATTCAATTATGGTGACTCAAATTGAATATGAG  1050
       |||||| || ||||||||||||||| |||||||||||  || |||||||
seq2  -CATTCA-TCCTTTACTTATTCAATT-TGGTGACTCAA--TGGATATGAG  1035

seq1  AGATGGTCAATTCCATGCTGACAGGCAAGTAGGTCTAGTGCACTTTTCTG  1100
      |||||||| ||||| ||   || ||| |||||||||||||| ||||| ||
seq2  AGATGGTC-ATTCC-TGTCTAC-GGC-AGTAGGTCTAGTGC-CTTTTTTG  1080

seq1  ACCAAAGCTAAAATAAAATTAAATATTAATATTATGAAATCTATATGTGG  1150
      ||||| | ||||   ||||||   ||| ||| |||||| | ||| || ||
seq2  ACCAACG-TAAA--TAAATTA---ATTTATA-TATGAACTTTATGTG-GG  1122

seq1  TTTTATTCATAAGCATCCAAAGAAACATACTTTATTGATCCAGATGTAGA  1200
       ||||||  |||||||||  |||||| |||| | ||| | | |||||| |
seq2  GTTTATT--TAAGCATCC--AGAAAC-TACTCTTTTGGTTCTGATGTACA  1167

seq1  CAATATAATTTAGAAAATTGTTATTCAAATGAATAGAGACTATTACGGGG  1250
      ||     |||||   ||||||||||   ||| || | || || |||||||
seq2  CA----TATTTATCGAATTGTTATT---ATG-ATCG-GATTA-TACGGGG  1207

seq1  AAGAGAGATGGAA  1263
        |||||||||||
seq2  --GAGAGATGGAA  1218