BAC Information

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BAC

Clone NameB6Ng01-088G16
Chromosome9 (Build37)
Map Location 67,060,982 - 67,203,221
singlet/doubletdoublet
Overlap geneTln2
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G16.bB6Ng01-088G16.g
ACCDH901272DH901273
length1,1441,121
definitionDH901272|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G16, 5' end.DH901273|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,060,982 - 67,062,149)(67,202,099 - 67,203,221)
sequence
gaattcaaggtgtggttgcaaaagcatttgtccctagatcatacaataat
taaaacaacaccaaccaaaaaatccccaaggataaaaatactggtgtgat
agcatggattccacggtctctggagatattggacacacacagatgtcttc
aagccctcaagaagttccagagacacacaaagatattcacctacactttg
cttcttaaatttttcctagaaacttttttccctccagagagacagggaca
ctctactaatgtcccatggaaccacactgccccctgtggaacagcctggt
gctggccaactgtgctgctggctgcaaacatggctaccttctaagacatg
gggcagggctgtcctgacaagtcaagcctgcatgtctgaagatcgtgggg
caaagttgcactggtgcgagatcccctgcgcgtctctcttctcccctttg
ggatgaagctccacactctacattttagcactgtcaatctccgtttctac
actttacagttttagccttttatgatttttctctcctccccctccccaca
gctccaaacatcctccactgctgctaaaagctcgaccttggccaattgct
tccctggctgcctttgatgggcagctccagccatctcctgggcagcttga
gttcctgtccctctctgaaactctgggtccttctagcaagtggaagtggg
actgacttctccagagcctaaggtcttggaggaaagtaatgttttctaca
gacccgggtgctgaagtaacgacagccctccgtcttccttcctgcttctc
taacgatccctataacatcagagtgctgggagcacagagccaccagcttt
gctctggatctctttacaccttgggtcacccaagccccacacgcctatgg
aagaggatcagccttctgatgaaacttggagcatttctgcagcacagttc
ggagcagaggagaccaaacttccttttccagctgtagaattctgaagcca
gatgaaggggaattctaaatatggtcccaaggtttgggccttgtactgac
ttcttagtatgcccctggacagacatctgtcttgccagtcaccctgaacc
atgcgagctttcttactctgggggaattgggcaagcatctgttg
gaattctatctatatttgatacctgcatggtggggcatgggctcctgcca
atgggagttttgagaaagtctcatcaggcctgcctacctcctgccaagct
agaccctcctcctgtcatcactctcctttggtcttggtctcaggtgaccc
tgcagacactgactacacagccgtgggctgtgcaatcactaccatttctt
ccaacctgaccgaaatgtccaagggggtcaagctgctggcagccctcatg
gacgatgacgtgggcagtggggaggatcttctcagagctgccaggaccct
cgccggggctgtgtctgatttgctgaaggctgtgcagcctacttcaggag
aggtgagtcctaagggcactcagtcacactaagatgagacgtgggtctcc
cttcaggtctgtggatggggctctggcttcctgaaaggtttctaccatcc
tgagaaaataccacagggtagaatggagagttactgaagcgggtcagatc
ctgtggctcaacccttggggtgggcagaggtgggcagaggtgctcctggt
agaaagccattccaacgagcacacaaagggcagacctacaggtctgcaac
tggacttctatagaagccagctttgttctaattgtgcaagacccattcat
tggaaatttcaagcgcatccacctgtttccagacgaatgggagtttatcc
ttgcatctcaccgggatttatttttcttccctcctatctggcatacaact
ggagatcttcgtttgtgtggaagaggagctgttctagtggatccctcacc
agacggatatgtggtgagacgtggggaagaaattcattttctttccaacc
agatcgtgttctctgtttgtagcctcgacagactgttttgactgctgccg
gaagcatcggccaagccagtgggagatcttctcaaacagattggagagaa
cgagacggatgagagattccaagtaagacatctacggctcccagtcttgg
aatgtgtctgagtgaggagtctgaccctcacagggagacgtatcgagcac
aagcctggtctttcttgggttattgggagttagctcccagggacatgatt
tgagtagggagacttagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67060982_67062149
seq2: B6Ng01-088G16.b_43_1186

seq1  GAATTCAAGGTGTGGTTGCAAAAGCATTTGTCCCTAGATCATACAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTGTGGTTGCAAAAGCATTTGTCCCTAGATCATACAATAAT  50

seq1  TAAAACAACACCAACCAAAAAATCCCCAAGGATAAAAATACTGGTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAACACCAACCAAAAAATCCCCAAGGATAAAAATACTGGTGTGAT  100

seq1  AGCATGGATTCCACGGTCTCTGGAGATATTGGACACACACAGATGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGATTCCACGGTCTCTGGAGATATTGGACACACACAGATGTCTTC  150

seq1  AAGCCCTCAAGAAGTTCCAGAGACACACAAAGATATTCACCTACACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCAAGAAGTTCCAGAGACACACAAAGATATTCACCTACACTTTG  200

seq1  CTTCTTAAATTTTTCCTAGAAACTTTTTTCCCTCCAGAGAGACAGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAATTTTTCCTAGAAACTTTTTTCCCTCCAGAGAGACAGGGACA  250

seq1  CTCTACTAATGTCCCATGGAACCACACTGCCCCCTGTGGAACAGCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAATGTCCCATGGAACCACACTGCCCCCTGTGGAACAGCCTGGT  300

seq1  GCTGGCCAACTGTGCTGCTGGCTGCAAACATGGCTACCTTCTAAGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAACTGTGCTGCTGGCTGCAAACATGGCTACCTTCTAAGACATG  350

seq1  GGGCAGGGCTGTCCTGACAAGTCAAGCCTGCATGTCTGAAGATCGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGCTGTCCTGACAAGTCAAGCCTGCATGTCTGAAGATCGTGGGG  400

seq1  CAAAGTTGCACTGGTGCGAGATCCCCTGCGCGTCTCTCTTCTCCCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCACTGGTGCGAGATCCCCTGCGCGTCTCTCTTCTCCCCTTTG  450

seq1  GGATGAAGCTCCACACTCTACATTTTAGCACTGTCAATCTCCGTTTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGCTCCACACTCTACATTTTAGCACTGTCAATCTCCGTTTCTAC  500

seq1  ACTTTACAGTTTTAGCCTTTTATGATTTTTCTCTCCTCCCCCTCCCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGTTTTAGCCTTTTATGATTTTTCTCTCCTCCCCCTCCCCACA  550

seq1  GCTCCAAACATCCTCCACTGCTGCTAAAAGCTCGACCTTGGCCAATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACATCCTCCACTGCTGCTAAAAGCTCGACCTTGGCCAATTGCT  600

seq1  TCCCTGGCTGCCTTTGATGGGCAGCTCCAGCCATCTCCTGGGCAGCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGCCTTTGATGGGCAGCTCCAGCCATCTCCTGGGCAGCTTGA  650

seq1  GTTCCTGTCCCTCTCTGAAACTCTGGGTCCTTCTAGCAAGTGGAAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCCCTCTCTGAAACTCTGGGTCCTTCTAGCAAGTGGAAGTGGG  700

seq1  ACTGACTTCTCCAGAGCCTAAGGTCTTGGAGGAAAGTAATGTTTTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCTCCAGAGCCTAAGGTCTTGGAGGAAAGTAATGTTTTCTACA  750

seq1  GACCCGGGTGCTGAAGTAACGACAGCCCTCCGTCTTCCTTCCTGCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGGGTGCTGAAGTAACGACAGCCCTCCGTCTTCCTTCCTGCTTCTC  800

seq1  TAACGATCCCTATAACATCAGAGTGCTGGGAGCACAGAGCCACCAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATCCCTATAACATCAGAGTGCTGGGAGCACAGAGCCACCAGCTTT  850

seq1  GCTCTGGATCTCTTTACACCTTGGGTCACCCAAGCCCCACACGCCTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGATCTCTTTACACCTTGGGTCACCCAAGCCCCACACGCCTATGG  900

seq1  AAGAGGATCAGCCTTCTGATGAAACCTGGAGCATTTCTGCAGCACAGTTC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGAGGATCAGCCTTCTGATGAAACTTGGAGCATTTCTGCAGCACAGTTC  950

seq1  GGAGCAGAGGAGAACCAAACTTCCTTTTCCAAGCTGTAGAATTCCTGAAG  1000
      |||||||||||| ||||||||||||||||| |||||||||||| ||||||
seq2  GGAGCAGAGGAG-ACCAAACTTCCTTTTCC-AGCTGTAGAATT-CTGAAG  997

seq1  CCAGAATTGAAGGGGAATTCTAAATATGGTCCCAAGGGTTTGGGCCTTGT  1050
      |||||  |||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGA--TGAAGGGGAATTCTAAATATGGTCCCAA-GGTTTGGGCCTTGT  1044

seq1  ACTGACCTTCTTAGGTAATGCCCCTGGACAGACCATCCTGTCCTTGCCCC  1100
      ||||| ||||||||   ||||||||||||||| ||| |||| ||||  ||
seq2  ACTGA-CTTCTTAG--TATGCCCCTGGACAGA-CAT-CTGT-CTTG--CC  1086

seq1  AGTCCACCCTGGAACACAATGCCAGAGGCTTTCTTACTCTGGGGGAAATG  1150
      ||| |||||||    || |||| |   |||||||||||||||||||| ||
seq2  AGT-CACCCTG---AACCATGCGA---GCTTTCTTACTCTGGGGGAATTG  1129

seq1  GCGCAAGCAATTCTGTTG  1168
      | |||||||  |||||||
seq2  G-GCAAGCA--TCTGTTG  1144

seq1: chr9_67202099_67203221
seq2: B6Ng01-088G16.g_67_1187 (reverse)

seq1  GACACTAAAAGGTCTCCCTACTCAAATCATGT-CCTTGGAGCTTACTCTC  49
      ||||||||   ||||||||||||||||||||| ||| |||||| |||| |
seq2  GACACTAA---GTCTCCCTACTCAAATCATGTCCCTGGGAGCTAACTCCC  47

seq1  AATAACCCAAGAAAGACCAGGCTTGTGCTCTGATACGTCCTCCCTGTGA-  98
      |||||||||||||||||||||||||||||| ||||||| |||||||||| 
seq2  AATAACCCAAGAAAGACCAGGCTTGTGCTC-GATACGT-CTCCCTGTGAG  95

seq1  GGTCAGACTCCTCACTCAGACACATTTCCAAGACTGGGGAGCCGTAGATG  148
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GGTCAGACTCCTCACTCAGACACA-TTCCAAGACT-GGGAGCCGTAGATG  143

seq1  TCTTACTTGGAATCTCTCATCCGTCTCGTTCTCTCCAATCTGTCTGAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TCTTACTTGGAATCTCTCATCCGTCTCGTTCTCTCCAATCTGTTTGAGAA  193

seq1  GATCT-CCACTGGCTTGGCCGATGCTTCCGGCAGCAGTCAAAACAGTCTG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCACTGGCTTGGCCGATGCTTCCGGCAGCAGTCAAAACAGTCTG  243

seq1  TCGAGGCTACAAACAGAGAACACGATCTGGTTGGAAAGAAAATGAATTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCTACAAACAGAGAACACGATCTGGTTGGAAAGAAAATGAATTTC  293

seq1  TT-CCCACGTCTCACCACATATCCGTCTGGTGAGGGATCCACTAGAACAG  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACGTCTCACCACATATCCGTCTGGTGAGGGATCCACTAGAACAG  343

seq1  CTCCTCTTCCACACAAACGAAGATCTCCAGTTGTATGCCAGATAGGA-GG  395
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCTCTTCCACACAAACGAAGATCTCCAGTTGTATGCCAGATAGGAGGG  393

seq1  AAGAAAAATAAATCCCGGTGAGATGCAAGGATAAACTCCCATTCGTCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATAAATCCCGGTGAGATGCAAGGATAAACTCCCATTCGTCTGG  443

seq1  AAACAGGTGGATGCGCTTGAAATTTCCAATGAATGGGTCTTGCACAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTGGATGCGCTTGAAATTTCCAATGAATGGGTCTTGCACAATTA  493

seq1  GAACAAAGCTGGCTTCTATAGAAGTCCAGTTGCAGACCTGTAGGTCTGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGCTGGCTTCTATAGAAGTCCAGTTGCAGACCTGTAGGTCTGCC  543

seq1  CTTTGTGTGCTCGTTGGAATGGCTTTCTACCAGGAGCACCTCTGCCCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGCTCGTTGGAATGGCTTTCTACCAGGAGCACCTCTGCCCACC  593

seq1  TCTGCCCACCCCAAGGGTTGAGCCACAGGATCTGACCCGCTTCAGTAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCACCCCAAGGGTTGAGCCACAGGATCTGACCCGCTTCAGTAACT  643

seq1  CTCCATTCTACCCTGTGGTATTTTCTCAGGATGGTAGAAACCTTTCAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTACCCTGTGGTATTTTCTCAGGATGGTAGAAACCTTTCAGGA  693

seq1  AGCCAGAGCCCCATCCACAGACCTGAAGGGAGACCCACGTCTCATCTTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGCCCCATCCACAGACCTGAAGGGAGACCCACGTCTCATCTTAG  743

seq1  TGTGACTGAGTGCCCTTAGGACTCACCTCTCCTGAAGTAGGCTGCACAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGAGTGCCCTTAGGACTCACCTCTCCTGAAGTAGGCTGCACAGC  793

seq1  CTTCAGCAAATCAGACACAGCCCCGGCGAGGGTCCTGGCAGCTCTGAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAAATCAGACACAGCCCCGGCGAGGGTCCTGGCAGCTCTGAGAA  843

seq1  GATCCTCCCCACTGCCCACGTCATCGTCCATGAGGGCTGCCAGCAGCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCCCACTGCCCACGTCATCGTCCATGAGGGCTGCCAGCAGCTTG  893

seq1  ACCCCCTTGGACATTTCGGTCAGGTTGGAAGAAATGGTAGTGATTGCACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTGGACATTTCGGTCAGGTTGGAAGAAATGGTAGTGATTGCACA  943

seq1  GCCCACGGCTGTGTAGTCAGTGTCTGCAGGGTCACCTGAGACCAAGACCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGGCTGTGTAGTCAGTGTCTGCAGGGTCACCTGAGACCAAGACCA  993

seq1  AAGGAGAGTGATGACAGGAGGAGGGTCTAGCTTGGCAGGAGGTAGGCAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTGATGACAGGAGGAGGGTCTAGCTTGGCAGGAGGTAGGCAGG  1043

seq1  CCTGATGAGACTTTCTCAAAACTCCCATTGGCAGGAGCCCATGCCCCACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGACTTTCTCAAAACTCCCATTGGCAGGAGCCCATGCCCCACC  1093

seq1  ATGCAGGTATCAAATATAGATAGAATTC  1123
      ||||||||||||||||||||||||||||
seq2  ATGCAGGTATCAAATATAGATAGAATTC  1121