BAC Information

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BAC

Clone NameB6Ng01-088H18
Chromosome9 (Build37)
Map Location 92,137,676 - 92,256,940
singlet/doubletdoublet
Overlap genePlscr1, Plscr2, 1700057G04Rik, LOC666850
Upstream geneZic1, Zic4, LOC331000
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088H18.bB6Ng01-088H18.g
ACCDH901322DH901323
length1,1721,109
definitionDH901322|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H18, 5' end.DH901323|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,255,752 - 92,256,940)(92,137,676 - 92,138,808)
sequence
gaattccaagaatcagattggcagcttagattgggagagaggaagttgaa
cctgtaatgtggccacagacttcatgactctcctccgaggttagggatgt
agaggtcataattcagagcaaacaggctgagatcagggagagagcagcca
caactccattctctcaggatgagattttcatcacaatccaactcttgctc
caggccagcaccccattagcaagtccccccgccccctgtaaatatgtgtg
tatgtgtaaaatcatttctttatgtgtgtgcttttccagggggagtaggt
ttgaaataagccatggaagcagatagtcaagatttcctgcccaaaacgat
catttatcatgcatagataacatatggcttaatttaaagctctgggaaac
taaaacatccagtatttgttaagtaaattattttttaaggcatttcagat
gtcacttgtataaaagtgttacatgggtatatgttacataatacttggat
aagtcttaggtttaaactgttgaaactgcataatgattgttaaaaatttt
gcatatgtgtcagattatgtgtgagtgtggatgcctacagatacgtacat
atggcaaatgagaaaataaacaggaattggctggtctggcatcatggatg
gagcacaacccagtgtgctcaccttatacaaagtctttggaaggactcct
ttttctgttgtgaactaatactttgtgacaactgagactccttgttctct
atgaaatccactatggctgaaacttctgggaaatagaaaataaaatcttc
tagttgaagaaaattacaagtgctctttacagtcaccagcaaatgctctt
ctgttatagtcagtctttgggtttcttattttggttctcatgccaaccat
cattttcttgctccatggagcaaacactcaggaggtggggaagcaaagat
cagccttcaaggccagtcttgactgcacagcttgaggccagtctgcacta
catgagacatctctaaaaaatatgttttttcactcttaaataggccttta
aatcacctagacagaaaaccagtcttcagaaagtgtgcagttaagactta
cgaatagattaaggctgtctgagtagttggcctgaatccttgaacatttt
catgagcagtatttacaggtcc
gaattcccaccacctctgacaaccagaaggcatgctctgcgtaaaggaaa
aagaaaaaaagagaaggagcgctgagtgcttggggtagaaaccctgtggg
gtggggaggttctaccttctttgcactctgtgatagccagtcccaagggt
ttggttacggttctagaattacatagtgcgacttctgattgtctgataga
gaaaggagagggcaaattaaactagacaatatggtcaacaatgggctatg
ggtgggctccttcattgttattaggtgtcgcttgagtaactaggtactat
tatcttaggaggaaggctgggtcacctcaggtcagccacattccttttga
tcatctcaaatgtgcaatgtcttcaccatcatagatcccttcctcattag
gaatctcacagaaacaagtttttctcctttccacacctctgtgttcacac
cttccctcttacaggaagaagtaaaggatctatggtctttaaacgtggct
gtgtcccttgttccaacacctggcctgacctggcctgaccaggtgtcctg
ctgtaacaatttagaggcctgattaatctgacagtctcagtgtctatgtc
aaattctgggtcctcaggacacactcattcttaaaaaacaagaatccttt
cctacttctttctccttccctcatcccctttctaattaatgtaatttaca
tccaaatggaagctgcctttcctcctctctctccccccagttcctcctgc
tcccctccccccatcctccaatcctccttttctcctcagaaaagggaggc
ctcctgtgtatatcaatcagccttggcccatcaagttgccctaggactag
gcacatcttctcctactttggtttgataaagttaggggaaaggaatctaa
aggcaggtaacacagggtcaaacacagctcctgctcctgctgttagtggc
tcacatgtaaaaaaaaaaaagagaaagtagccaggatatttagataattt
tgctagagatcaagagaagcagaagaattcagtcagctcagagcactcag
aagagtaatggtgcatttggtctgagtctggctcttttcttagcagagaa
atccactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92255752_92256940
seq2: B6Ng01-088H18.b_50_1221 (reverse)

seq1  GGACCTTTGTAAATAACATGCTCATGAAAAATGGTCAGAGAATCAGGGCC  50
      |||||  ||||||||   |||||||| |||||| |||  || ||| ||||
seq2  GGACC--TGTAAATA--CTGCTCATG-AAAATGTTCAAGGATTCA-GGCC  44

seq1  AACTTACACTTCAGACAGGCTTTATTCTATTCGTAAAGTCTCTAGACTGC  100
      ||||   || ||||||| || ||| ||||||||| |||||| || |||||
seq2  AACT---AC-TCAGACA-GCCTTAATCTATTCGT-AAGTCT-TA-ACTGC  86

seq1  ACAACTTTTCTGAAGACTGGTTTTCTGTCTAGGTGATTTAAAGGCCTATT  150
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA--CTTTCTGAAGACTGGTTTTCTGTCTAGGTGATTTAAAGGCCTATT  134

seq1  T-AGAGTG-AAAAACATATTTTTTAAGAGATGGTCTCATGTAGTGCAGAC  198
      | |||||| ||||||||||||||| |||||| ||||||||||||||||||
seq2  TAAGAGTGAAAAAACATATTTTTT-AGAGAT-GTCTCATGTAGTGCAGAC  182

seq1  TGGCCTCAAGCTGTGCAGTCAAGACTGGCCTTGAAGGCCTGATCTTTGCT  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCCTCAAGCTGTGCAGTCAAGACTGGCCTTGAAGG-CTGATCTTTGCT  231

seq1  TCCCCACCTCCTGAGTGTTTGCTCCATGGAGCAAGAAAATGATGGTTGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTCCTGAGTGTTTGCTCCATGGAGCAAGAAAATGATGGTTGGC  281

seq1  ATGAGAACCAAAATAAGAAACCCAAAGACTGACTATAACAGAAGAGCATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACCAAAATAAGAAACCCAAAGACTGACTATAACAGAAGAGCATT  331

seq1  TGCTGGTGACTGTAAAGAGCACTTGTAATTTTCTTCAACTAGAAGATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGACTGTAAAGAGCACTTGTAATTTTCTTCAACTAGAAGATTTT  381

seq1  ATTTTCTATTTCCCAGAAGTTTCAGCCATAGTGGATTTCATAGAGAACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATTTCCCAGAAGTTTCAGCCATAGTGGATTTCATAGAGAACAA  431

seq1  GGAGTCTCAGTTGTCACAAAGTATTAGTTCACAACAGAAAAAGGAGTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCAGTTGTCACAAAGTATTAGTTCACAACAGAAAAAGGAGTCCT  481

seq1  TCCAAAGACTTTGTATAAGGTGAGCACACTGGGTTGTGCTCCATCCATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACTTTGTATAAGGTGAGCACACTGGGTTGTGCTCCATCCATGA  531

seq1  TGCCAGACCAGCCAATTCCTGTTTATTTTCTCATTTGCCATATGTACGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACCAGCCAATTCCTGTTTATTTTCTCATTTGCCATATGTACGTA  581

seq1  TCTGTAGGCATCCACACTCACACATAATCTGACACATATGCAAAATTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGCATCCACACTCACACATAATCTGACACATATGCAAAATTTTT  631

seq1  AACAATCATTATGCAGTTTCAACAGTTTAAACCTAAGACTTATCCAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCATTATGCAGTTTCAACAGTTTAAACCTAAGACTTATCCAAGTA  681

seq1  TTATGTAACATATACCCATGTAACACTTTTATACAAGTGACATCTGAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAACATATACCCATGTAACACTTTTATACAAGTGACATCTGAAAT  731

seq1  GCCTTAAAAAATAATTTACTTAACAAATACTGGATGTTTTAGTTTCCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAAAAATAATTTACTTAACAAATACTGGATGTTTTAGTTTCCCAG  781

seq1  AGCTTTAAATTAAGCCATATGTTATCTATGCATGATAAATGATCGTTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAATTAAGCCATATGTTATCTATGCATGATAAATGATCGTTTTG  831

seq1  GGCAGGAAATCTTGACTATCTGCTTCCATGGCTTATTTCAAACCTACTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAATCTTGACTATCTGCTTCCATGGCTTATTTCAAACCTACTCC  881

seq1  CCCTGGAAAAGCACACACATAAAGAAATGATTTTACACATACACACATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAAAGCACACACATAAAGAAATGATTTTACACATACACACATAT  931

seq1  TTACAGGGGGCGGGGGGACTTGCTAATGGGGTGCTGGCCTGGAGCAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGGGCGGGGGGACTTGCTAATGGGGTGCTGGCCTGGAGCAAGAG  981

seq1  TTGGATTGTGATGAAAATCTCATCCTGAGAGAATGGAGTTGTGGCTGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGTGATGAAAATCTCATCCTGAGAGAATGGAGTTGTGGCTGCTC  1031

seq1  TCTCCCTGATCTCAGCCTGTTTGCTCTGAATTATGACCTCTACATCCCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGATCTCAGCCTGTTTGCTCTGAATTATGACCTCTACATCCCTA  1081

seq1  ACCTCGGAGGAGAGTCATGAAGTCTGTGGCCACATTACAGGTTCAACTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGAGGAGAGTCATGAAGTCTGTGGCCACATTACAGGTTCAACTTC  1131

seq1  CTCTCTCCCAATCTAAGCTGCCAATCTGATTCTTGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCAATCTAAGCTGCCAATCTGATTCTTGGAATTC  1172

seq1: chr9_92137676_92138808
seq2: B6Ng01-088H18.g_69_1177

seq1  GAATTCCCACCACCTCTGACAACCAGAAGGCATGCTCTGCGTAAAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCACCTCTGACAACCAGAAGGCATGCTCTGCGTAAAGGAAA  50

seq1  AAGAAAAAAAGAGAAGGAGCGCTGAGTGCTTGGGGTAGAAACCCTGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAGAAGGAGCGCTGAGTGCTTGGGGTAGAAACCCTGTGGG  100

seq1  GTGGGGAGGTTCTACCTTCTTTGCACTCTGTGATAGCCAGTCCCAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGGTTCTACCTTCTTTGCACTCTGTGATAGCCAGTCCCAAGGGT  150

seq1  TTGGTTACGGTTCTAGAATTACATAGTGCGACTTCTGATTGTCTGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTACGGTTCTAGAATTACATAGTGCGACTTCTGATTGTCTGATAGA  200

seq1  GAAAGGAGAGGGCAAATTAAACTAGACAATATGGTCAACAATGGGCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAGGGCAAATTAAACTAGACAATATGGTCAACAATGGGCTATG  250

seq1  GGTGGGCTCCTTCATTGTTATTAGGTGTCGCTTGAGTAACTAGGTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTCCTTCATTGTTATTAGGTGTCGCTTGAGTAACTAGGTACTAT  300

seq1  TATCTTAGGAGGAAGGCTGGGTCACCTCAGGTCAGCCACATTCCTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGGAGGAAGGCTGGGTCACCTCAGGTCAGCCACATTCCTTTTGA  350

seq1  TCATCTCAAATGTGCAATGTCTTCACCATCATAGATCCCTTCCTCATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAAATGTGCAATGTCTTCACCATCATAGATCCCTTCCTCATTAG  400

seq1  GAATCTCACAGAAACAAGTTTTTCTCCTTTCCACACCTCTGTGTTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACAGAAACAAGTTTTTCTCCTTTCCACACCTCTGTGTTCACAC  450

seq1  CTTCCCTCTTACAGGAAGAAGTAAAGGATCTATGGTCTTTAAACGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTTACAGGAAGAAGTAAAGGATCTATGGTCTTTAAACGTGGCT  500

seq1  GTGTCCCTTGTTCCAACACCTGGCCTGACCTGGCCTGACCAGGTGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTGTTCCAACACCTGGCCTGACCTGGCCTGACCAGGTGTCCTG  550

seq1  CTGTAACAATTTAGAGGCCTGATTAATCTGACAGTCTCAGTGTCTATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAATTTAGAGGCCTGATTAATCTGACAGTCTCAGTGTCTATGTC  600

seq1  AAATTCTGGGTCCTCAGGACACACTCATTCTTAAAAAACAAGAATCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGGGTCCTCAGGACACACTCATTCTTAAAAAACAAGAATCCTTT  650

seq1  CCTACTTCTTTCTCCTTCCCTCATCCCCTTTCTAATTAATGTAATTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCTTTCTCCTTCCCTCATCCCCTTTCTAATTAATGTAATTTACA  700

seq1  TCCAAATGGAAGCTGCCTTTCCTCCTCTCTCTCCCCCCAGTTCCTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGGAAGCTGCCTTTCCTCCTCTCTCTCCCCCCAGTTCCTCCTGC  750

seq1  TCCCCTCCCCCCATCCTCCAATCCTCCTTTTCTCCTCAGAAAAGGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCCCATCCTCCAATCCTCCTTTTCTCCTCAGAAAAGGGAGGC  800

seq1  CTCCTGTGTATATCAATCAGCCTTGGCCCATCAAGTTGCCCTAGGACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGTATATCAATCAGCCTTGGCCCATCAAGTTGCCCTAGGACTAG  850

seq1  GCACATCTTCTCCTACTTTGGTTTGATAAAGTTAGGGGAAAGGAATCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTTCTCCTACTTTGGTTTGATAAAGTTAGGGGAAAGGAATCTAA  900

seq1  AGGCAGGTAACACAGGGTCAAACACAGCCCCTGCTCCTGCTGTTAGGTGG  950
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGGCAGGTAACACAGGGTCAAACACAGCTCCTGCTCCTGCTGTTA-GTGG  949

seq1  CTCACATGCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGGTAGCCAGGAAT  1000
      |||||||| |||||||||||| | |||           ||||||||| ||
seq2  CTCACATGTAAAAAAAAAAAAGAGAAA-----------GTAGCCAGG-AT  987

seq1  ATTTTAAGAATAAATTTTGCTAGAGAATCAAGAGAGGCAAGAGAATTCCA  1050
      ||||  |||   ||||||||||||| ||||||||| |||  |||||| ||
seq2  ATTT--AGA--TAATTTTGCTAGAG-ATCAAGAGAAGCAGAAGAATT-CA  1031

seq1  GTCAGCTCAGAGGCAACTCAG-AGAGTAAATGTGGTATTTGTCTGAGTCT  1099
      ||||||||||||   |||||| |||||||  |||   || ||||||||||
seq2  GTCAGCTCAGAG--CACTCAGAAGAGTAATGGTGCATTTGGTCTGAGTCT  1079

seq1  GGCTTCTTTTCCTTAGCAAGAGAATTCACACTTA  1133
      ||| |||||| |||||| |||||| || ||||||
seq2  GGC-TCTTTT-CTTAGC-AGAGAAATC-CACTTA  1109