BAC Information

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BAC

Clone NameB6Ng01-089G17
Chromosome9 (Build37)
Map Location 106,496,068 - 106,658,582
singlet/doubletdoublet
Overlap geneLOC100041096, Grm2, Tex264, Rad54l2
Upstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4
Downstream geneLOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G17.bB6Ng01-089G17.g
ACCDH902002DH902003
length530984
definitionDH902002|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G17, 5' end.DH902003|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,496,068 - 106,496,603)(106,657,588 - 106,658,582)
sequence
caggcacaggaaccttagcaattcagcacgagctggcacagggtctctct
cttgctttgagtgaaagaggtggaagctatcctaaaatgcccagaaaagg
gagccccagacagagaagccaggctcggctgtgagcctaagctgggtgtg
gtgaaaggtgcctggaatctgcactcacgggagtggagtggagtagagtt
aggaagatcatgagtttgagactgcagtcagagcctgttttaggaaccac
aaaccagggtctagagagatggctgaatgcttggaaaatctttttccaac
cttttcctctgaggtagtgtctgtctttgtcactgaggtgcgtttcctgc
gtgcagcaaaatgctgggtcctggagtgcttaagagtgtgtactgctctt
atagaagacctaagttcagttcccagcacccacacacatcaggatacact
gccagtaacgccactgagagatacaatgctatctgctagcttccatggcc
tctgtgtgtgtgtgtgtatgtgtgtgtgtg
gaattcactcactttctattgtattcataatggtctgggtatagttttta
cttttaaaagatccacacataattggacataatttgatataatcatgcaa
tgtgtaatgatagaatcagggagttagcctttccccttctttaaaaaagt
gttccttctttgtactgggagctgttgaggttccttttttcatcttttag
aaaaaaaatcgatgctgaactgtgaactttaattaccgtactgaactgta
acacttgctctccatctttccccatgcgtcctccaccttggctctgattt
agtgtcctgcttttttgctgttgcgctgctgctgctgctgctgctggtga
ggatggtaatggcagtgatgacacagggtcttgctatgtactctttgctg
gtctggaacttaggtagaccaggctggtggcatctcttgtcttattatca
tatgtagtacttgactattgaactgttgtttgctactgtcaggagtgtga
gggctgaggtggtgttttgtttctttttgtttgttattcagacagtctct
cttatgtagctctggttatcttggaactcagagttccacctacctttcct
tgagtgctgggattagaggtgtgggccacattacacccagcctttcttcc
tcctcctcctcttcctcctcctcctcctcctcttcctcttctccttctcc
tcctcgtcgtcctcgtcctcctcatcctcctcatcttgtcctcctcctcc
tttttgctgatattggtttaaattaatgttaagtgagggtatgttacttg
ttactgtgatgttactctattgctataaaccttatttcctagaatgacaa
ccatctgggtacctaaagtactaatagaaagtttgcctaagccagtgtga
tgattcatacctaaaaacctggcttggaggtgaagatatgagatctggaa
tcaggacggccttggctacttgctagttgaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106496068_106496603
seq2: B6Ng01-089G17.b_42_577

seq1  GAATTCCAGGCACAGGAACCTTAGCAATTCAGCACGAGCTGGCACAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCACAGGAACCTTAGCAATTCAGCACGAGCTGGCACAGGGT  50

seq1  CTCTCTCTTGCTTTGAGTGAAAGAGGTGGAAGCTATCCTAAAATGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTGCTTTGAGTGAAAGAGGTGGAAGCTATCCTAAAATGCCCAG  100

seq1  AAAAGGGAGCCCCAGACAGAGAAGCCAGGCTCGGCTGTGAGCCTAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGCCCCAGACAGAGAAGCCAGGCTCGGCTGTGAGCCTAAGCTG  150

seq1  GGTGTGGTGAAAGGTGCCTGGAATCTGCACTCACGGGAGTGGAGTGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGAAAGGTGCCTGGAATCTGCACTCACGGGAGTGGAGTGGAGT  200

seq1  AGAGTTAGGAAGATCATGAGTTTGAGACTGCAGTCAGAGCCTGTTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGGAAGATCATGAGTTTGAGACTGCAGTCAGAGCCTGTTTTAGG  250

seq1  AACCACAAACCAGGGTCTAGAGAGATGGCTGAATGCTTGGAAAATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAACCAGGGTCTAGAGAGATGGCTGAATGCTTGGAAAATCTTTT  300

seq1  TCCAACCTTTTCCTCTGAGGTAGTGTCTGTCTTTGTCACTGAGGTGCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTTTTCCTCTGAGGTAGTGTCTGTCTTTGTCACTGAGGTGCGTT  350

seq1  TCCTGCGTGCAGCAAAATGCTGGGTCCTGGAGTGCTTAAGAGTGTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGTGCAGCAAAATGCTGGGTCCTGGAGTGCTTAAGAGTGTGTACT  400

seq1  GCTCTTATAGAAGACCTAAGTTCAGTTCCCAGCACCCACACACATCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATAGAAGACCTAAGTTCAGTTCCCAGCACCCACACACATCAGGA  450

seq1  TACACTGCCAGTAACGCCACTGAGAGATACAATGCTATCTGCTAGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCCAGTAACGCCACTGAGAGATACAATGCTATCTGCTAGCTTCC  500

seq1  ATGGCCTCTGTGTGTGTGTGTGTATGTGTGTGTGTG  536
      ||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTGTGTGTGTGTGTGTATGTGTGTGTGTG  536

seq1: chr9_106657588_106658582
seq2: B6Ng01-089G17.g_68_1051 (reverse)

seq1  GTCTTCAACTGGCAATGTAGCCAAGGCCGTCCTTGAACTCCAGATCCTCA  50
      |||||||||| |||| |||||||||||||||||   | ||||||| ||||
seq2  GTCTTCAACTAGCAA-GTAGCCAAGGCCGTCCT--GATTCCAGAT-CTCA  46

seq1  TATCTTCACCTCCCAAGCCCAGGGTTTCTAGGTATGAATCATCACAACTG  100
      ||||||||||| |||||||   ||||| ||||||||||||||||| ||||
seq2  TATCTTCACCT-CCAAGCC--AGGTTTTTAGGTATGAATCATCAC-ACTG  92

seq1  GCTTTAGGCAAACTTTCTAATTAGTACCTTTAGGTACCCAGATGGTTGTC  150
      || ||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GC-TTAGGCAAACTTTCT-ATTAGTA-CTTTAGGTACCCAGATGGTTGTC  139

seq1  ATTCTAGGAAATAAGGTTTATAGCAATAGAGTAACAATCACAGTAACAAG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTCTAGGAAATAAGGTTTATAGCAATAGAGTAAC-ATCACAGTAACAAG  188

seq1  TAACATACCCTCACTTAACATTAATTTAAACCAATATCAGC-AAAAGGAG  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACATACCCTCACTTAACATTAATTTAAACCAATATCAGCAAAAAGGAG  238

seq1  GAGGAGGACAAGATGAGGAGGATGAGGAGGACGAGGACGACGAGGAGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACAAGATGAGGAGGATGAGGAGGACGAGGACGACGAGGAGGAG  288

seq1  AAGGAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAA  338

seq1  GAAAGGCTGGGTGTAATGTGGCCCACACCTCTAATCCCAGCACTCAAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTGGGTGTAATGTGGCCCACACCTCTAATCCCAGCACTCAAGGA  388

seq1  AAGGTAGGTGGAACTCTGAGTTCCAAGATAACCAGAGCTACATAAGAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGTGGAACTCTGAGTTCCAAGATAACCAGAGCTACATAAGAGAG  438

seq1  ACTGTCTGAATAACAAACAAAAAGAAACAAAACACCACCTCAGCCCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGAATAACAAACAAAAAGAAACAAAACACCACCTCAGCCCTCAC  488

seq1  ACTCCTGACAGTAGCAAACAACAGTTCAATAGTCAAGTACTACATATGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGACAGTAGCAAACAACAGTTCAATAGTCAAGTACTACATATGAT  538

seq1  AATAAGACAAGAGATGCCACCAGCCTGGTCTACCTAAGTTCCAGACCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAAGAGATGCCACCAGCCTGGTCTACCTAAGTTCCAGACCAGC  588

seq1  AAAGAGTACATAGCAAGACCCTGTGTCATCACTGCCATTACCATCCTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTACATAGCAAGACCCTGTGTCATCACTGCCATTACCATCCTCAC  638

seq1  CAGCAGCAGCAGCAGCAGCAGCGCAACAGCAAAAAAGCAGGACACTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCAGCAGCAGCAGCGCAACAGCAAAAAAGCAGGACACTAAAT  688

seq1  CAGAGCCAAGGTGGAGGACGCATGGGGAAAGATGGAGAGCAAGTGTTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAAGGTGGAGGACGCATGGGGAAAGATGGAGAGCAAGTGTTACA  738

seq1  GTTCAGTACGGTAATTAAAGTTCACAGTTCAGCATCGATTTTTTTTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTACGGTAATTAAAGTTCACAGTTCAGCATCGATTTTTTTTCTAA  788

seq1  AAGATGAAAAAAGGAACCTCAACAGCTCCCAGTACAAAGAAGGAACACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAAAAAGGAACCTCAACAGCTCCCAGTACAAAGAAGGAACACTT  838

seq1  TTTTAAAGAAGGGGAAAGGCTAACTCCCTGATTCTATCATTACACATTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAAGGGGAAAGGCTAACTCCCTGATTCTATCATTACACATTGC  888

seq1  ATGATTATATCAAATTATGTCCAATTATGTGTGGATCTTTTAAAAGTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATATCAAATTATGTCCAATTATGTGTGGATCTTTTAAAAGTAAA  938

seq1  AACTATACCCAGACCATTATGAATACAATAGAAAGTGAGTGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACCCAGACCATTATGAATACAATAGAAAGTGAGTGAATTC  984