BAC Information

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BAC

Clone NameB6Ng01-089P08
Chromosome9 (Build37)
Map Location 123,403,789 - 123,468,635
singlet/doubletdoublet
Overlap geneLimd1, Sacm1l
Upstream geneLOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2
Downstream geneSlc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089P08.bB6Ng01-089P08.g
ACCDH902394DH902395
length1,1521,022
definitionDH902394|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P08, 5' end.DH902395|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,403,789 - 123,404,959)(123,467,611 - 123,468,635)
sequence
gaattcatattgcatttatatgtggttctatgctaactaatcagtactat
atattagataaggtatctttgaacagaaagcacaagtcagggtggagaaa
agctagcagcagcttattacgtttttaggcagagagacattagactgaag
cgatagcagttttgaatgtttcctgctcttacagaggacccaagtttgat
tcctagtatccatattagctggcttgtgtgtgtatttctgtactgagatg
ccaagctagataaacactgcaccccaatgagccacatcttcagctcctac
ttatgtgcttttaaatgctcagtaatcttatgttagagggaattgattga
gggaacatactcttttacccttcaaaagagtctagggataaaaaacagag
ctggggctggtgagatggctcagtgggtaagagcaccggactgctcttcc
aaaggtcccaagttcaaatcccagcaaccacatggtggctcacaaccaac
tgtaacgagatctgactccctcttctggagtgtctgaagacagctacagt
gtacttacatataataaataaataaatctttaaaaaaaaaaaaaacagag
ctgaaaacccttgaatgaagtgatttttttttctatttacttgttggaaa
agtcctttccgtctggtttctgtgctttcctgggagactcacttgggtca
ctttttctttcagggatagtcagatcctaattttatgcaagtaaccatga
atgcagacttagagtacagtacctgacacacatacacacaccccaatatg
acaactttctccaggggtggccaggaggagtgtcaggcattttgttgtta
ggaagagtcctcctgtccagccagtagtctttctaaagctctgaccagtt
cagtagtcagatacatcttgtaaatctgaaccaggtcctctgctgccttt
agcccctttccctttcttcttgggatgtttgattcttgggaaccatcttg
ttcagttccttctcttgacagggttgcttcttcttcctggaagatgcatg
acaattcatgtctggtgcatgtacacagtcatttactcttacatctaagg
caggaagtttattagcatatttctaggaaaaataaggctaaggtatgccc
tg
gaattcaaagttctgaaacccctgagcctaaacacttctcagacatcttg
tcacaacagaagattagacttctacagagaactgagagggcaaaattatg
gtcaagtgtgtgtgttatagttacgttagattagtattatttacccactc
cctagtaagtgctcagtcattttatagtacacattcaaacatgtattagg
acaaggaagcagagttgaattggagtacattacctctggctgagcagaca
gttccctgagcagatgcccgttccatacaaaccgctgatctgcctgagag
aagttttgaaatttaatgaaatatctccaacaacagaaatgttctaagtt
agaaaatgacacccatcaatgcctccactggtggctaatatgattttctc
cgacaggtcccaacaaaacacatctcacttcaaatctgctcctcctctcc
ccattcctatctgcattagaactcactgaaactctgggtatcctctccca
cctttctaggtaatcactgaccaaaagctaaatctctttcagagtctgtg
gtagtttgaatatgcttggcccagggagtggcactactaggaagtgtggc
ctttttggagcaggcatgcacttgttggaagaagtgtgtcactgtgaggg
tggactttgagattctcctcctagccatgtgggacagtcttctggttccc
tttgatgtagaactttcagctcttccaccactgtgtctgcttggacactg
gccttgatgataatgggttgaacctctaaatgtgtaagcgagtcccaatc
aaatgtccttcataagagtttcctgggctatggtgactcttcatggcaat
ggaaaccctaagacagaagcttgtaccagagactagaaggattgctgcga
taggtctgatcatgattttgtttggaagaatgtggatttggggactctgg
atttggaagtggtggaatgcttaagtggggctgatgggccatcctagtat
gatatggaagacatgctgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123403789_123404959
seq2: B6Ng01-089P08.b_47_1198

seq1  GAATTCATATTGCATTTATATGTGGTTCTATGCTAACTAATCAGTACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTGCATTTATATGTGGTTCTATGCTAACTAATCAGTACTAT  50

seq1  ATATTAGATAAGGTATCTTTGAACAGAAAGCACAAGTCAGGGTGGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATAAGGTATCTTTGAACAGAAAGCACAAGTCAGGGTGGAGAAA  100

seq1  AGCTAGCAGCAGCTTATTACGTTTTTAGGCAGAGAGACATTAGACTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGCAGCTTATTACGTTTTTAGGCAGAGAGACATTAGACTGAAG  150

seq1  CGATAGCAGTTTTGAATGTTTCCTGCTCTTACAGAGGACCCAAGTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGCAGTTTTGAATGTTTCCTGCTCTTACAGAGGACCCAAGTTTGAT  200

seq1  TCCTAGTATCCATATTAGCTGGCTTGTGTGTGTATTTCTGTACTGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTATCCATATTAGCTGGCTTGTGTGTGTATTTCTGTACTGAGATG  250

seq1  CCAAGCTAGATAAACACTGCACCCCAATGAGCCACATCTTCAGCTCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTAGATAAACACTGCACCCCAATGAGCCACATCTTCAGCTCCTAC  300

seq1  TTATGTGCTTTTAAATGCTCAGTAATCTTATGTTAGAGGGAATTGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCTTTTAAATGCTCAGTAATCTTATGTTAGAGGGAATTGATTGA  350

seq1  GGGAACATACTCTTTTACCCTTCAAAAGAGTCTAGGGATAAAAAACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATACTCTTTTACCCTTCAAAAGAGTCTAGGGATAAAAAACAGAG  400

seq1  CTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCGGACTGCTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCGGACTGCTCTTCC  450

seq1  AAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAAC  500

seq1  TGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGT  550

seq1  GTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAACAGAG  600

seq1  CTGAAAACCCTTGAATGAAGTGATTTTTTTTTCTATTTACTTGTTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACCCTTGAATGAAGTGATTTTTTTTTCTATTTACTTGTTGGAAA  650

seq1  AGTCCTTTCCGTCTGGTTTCTGTGCTTTCCTGGGAGACTCACTTGGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTCCGTCTGGTTTCTGTGCTTTCCTGGGAGACTCACTTGGGTCA  700

seq1  CTTTTTCTTTCAGGGATAGTCAGATCCTAATTTTATGCAAGTAACCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTCAGGGATAGTCAGATCCTAATTTTATGCAAGTAACCATGA  750

seq1  ATGCAGACTTAGAGTACAGTACCTGACACACATACACACACCCCAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTTAGAGTACAGTACCTGACACACATACACACACCCCAATATG  800

seq1  ACAACTTTCTCCAGGGGTGGCCAGGAGGAGTGTCAGGCATTTTGTTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCTCCAGGGGTGGCCAGGAGGAGTGTCAGGCATTTTGTTGTTA  850

seq1  GGAAGAGTCCTCCTGTCCAGCCAGTAGTCTTTCTAAAGCTCTGACCAG-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAAGAGTCCTCCTGTCCAGCCAGTAGTCTTTCTAAAGCTCTGACCAGTT  900

seq1  CAGTAGTCAGATACATCCTGGTAAAATCTGAAACCAGGTCCTCTGCTGCC  949
      ||||||||||||||||| ||   ||||||| |||||||||||||||||||
seq2  CAGTAGTCAGATACATCTTG--TAAATCTG-AACCAGGTCCTCTGCTGCC  947

seq1  TTTAGCCCCCTTTCCCTTTCCTCCTGGGATGTTTGATTC-TGGGAACCAT  998
      ||||| |||||||||||||| || ||||||||||||||| ||||||||||
seq2  TTTAG-CCCCTTTCCCTTTCTTCTTGGGATGTTTGATTCTTGGGAACCAT  996

seq1  CTCTGTCCAGTTCCCTTCCTCTGGACAGGGTTGCTTCTGTCTCTTCCTGG  1048
      || ||| |||||||  | |||| |||||||||||||||   |||||||||
seq2  CT-TGTTCAGTTCC--TTCTCTTGACAGGGTTGCTTCT---TCTTCCTGG  1040

seq1  AAGATGGCATGAC-ATTCATGTCT-GTGCATGGTACACAGTTCATTTACT  1096
      ||||| ||||||| |||||||||| |||||| |||||||| |||||||||
seq2  AAGAT-GCATGACAATTCATGTCTGGTGCAT-GTACACAG-TCATTTACT  1087

seq1  CTACCAATCTTAAGCCAGGAAGTTTTATTAAGCAATATTTCCTAGGGAAA  1146
      ||  | ||| |||| ||||||| |||||| ||| |||||| ||| |||||
seq2  CTTAC-ATC-TAAGGCAGGAAG-TTTATT-AGC-ATATTT-CTA-GGAAA  1130

seq1  AAAAAAGCTTTAATGATATGCCCTG  1171
      || || |||   | | |||||||||
seq2  AATAAGGCT---AAGGTATGCCCTG  1152

seq1: chr9_123467611_123468635
seq2: B6Ng01-089P08.g_70_1091 (reverse)

seq1  TTAGCAGCAATGTCTTCCATATCATACTAGGATGGCCCATCAAGCCCCAC  50
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGCAGC-ATGTCTTCCATATCATACTAGGATGGCCCATC-AGCCCCAC  48

seq1  TTAAAGCATTCCACCACTTTCCAAATCCAGAGTCCCCAAATCCACATTCC  100
      || |||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TT-AAGCATTCCACCAC-TTCCAAATCCAGAGTCCCCAAATCCACATTCT  96

seq1  TCCAAACAAAATCATGATCAGACCTATCGCAGCAATCC-TCTAGTCTCTG  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCAAACAAAATCATGATCAGACCTATCGCAGCAATCCTTCTAGTCTCTG  146

seq1  GTACCAGCTTCTGTCTTAGGGTTTCCATTGCCATGAAGAGTCACCATAGC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCTTCTGTCTTAGGGTTTCCATTGCCATGAAGAGTCACCATAGC  196

seq1  CCAGGAAACTCTTATGAAGGACATTTGATTGGGACTCGCTTACACATTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACTCTTATGAAGGACATTTGATTGGGACTCGCTTACACATTTA  246

seq1  GAGGTTCAACCCATTATCATCAAGGCCAGTGTCCAAGCAGACACAGTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCAACCCATTATCATCAAGGCCAGTGTCCAAGCAGACACAGTGGT  296

seq1  GGAAGAGCTGAAAGTTCTACATCAAAGGGAACCAGAAGACTGTCCCACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTGAAAGTTCTACATCAAAGGGAACCAGAAGACTGTCCCACAT  346

seq1  GGCTAGGAGGAGAATCTCAAAGTCCACCCTCACAGTGACACACTTCTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGAGGAGAATCTCAAAGTCCACCCTCACAGTGACACACTTCTTCC  396

seq1  AACAAGTGCATGCCTGCTCCAAAAAGGCCACACTTCCTAGTAGTGCCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGCATGCCTGCTCCAAAAAGGCCACACTTCCTAGTAGTGCCACT  446

seq1  CCCTGGGCCAAGCATATTCAAACTACCACAGACTCTGAAAGAGATTTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCCAAGCATATTCAAACTACCACAGACTCTGAAAGAGATTTAGC  496

seq1  TTTTGGTCAGTGATTACCTAGAAAGGTGGGAGAGGATACCCAGAGTTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCAGTGATTACCTAGAAAGGTGGGAGAGGATACCCAGAGTTTCA  546

seq1  GTGAGTTCTAATGCAGATAGGAATGGGGAGAGGAGGAGCAGATTTGAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTAATGCAGATAGGAATGGGGAGAGGAGGAGCAGATTTGAAGT  596

seq1  GAGATGTGTTTTGTTGGGACCTGTCGGAGAAAATCATATTAGCCACCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGTTTTGTTGGGACCTGTCGGAGAAAATCATATTAGCCACCAGT  646

seq1  GGAGGCATTGATGGGTGTCATTTTCTAACTTAGAACATTTCTGTTGTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATTGATGGGTGTCATTTTCTAACTTAGAACATTTCTGTTGTTGG  696

seq1  AGATATTTCATTAAATTTCAAAACTTCTCTCAGGCAGATCAGCGGTTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCATTAAATTTCAAAACTTCTCTCAGGCAGATCAGCGGTTTGT  746

seq1  ATGGAACGGGCATCTGCTCAGGGAACTGTCTGCTCAGCCAGAGGTAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACGGGCATCTGCTCAGGGAACTGTCTGCTCAGCCAGAGGTAATGT  796

seq1  ACTCCAATTCAACTCTGCTTCCTTGTCCTAATACATGTTTGAATGTGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATTCAACTCTGCTTCCTTGTCCTAATACATGTTTGAATGTGTAC  846

seq1  TATAAAATGACTGAGCACTTACTAGGGAGTGGGTAAATAATACTAATCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGACTGAGCACTTACTAGGGAGTGGGTAAATAATACTAATCTA  896

seq1  ACGTAACTATAACACACACACTTGACCATAATTTTGCCCTCTCAGTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACTATAACACACACACTTGACCATAATTTTGCCCTCTCAGTTCTC  946

seq1  TGTAGAAGTCTAATCTTCTGTTGTGACAAGATGTCTGAGAAGTGTTTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTCTAATCTTCTGTTGTGACAAGATGTCTGAGAAGTGTTTAGG  996

seq1  CTCAGGGGTTTCAGAACTTTGAATTC  1025
      ||||||||||||||||||||||||||
seq2  CTCAGGGGTTTCAGAACTTTGAATTC  1022