BAC Information

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BAC

Clone NameB6Ng01-090A22
Chromosome9 (Build37)
Map Location 55,124,208 - 55,290,066
singlet/doubletdoublet
Overlap geneNrg4, AI118078
Upstream geneGldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22
Downstream geneEtfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A22.bB6Ng01-090A22.g
ACCDH902462DH902463
length8441,050
definitionDH902462|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A22, 5' end.DH902463|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,124,208 - 55,124,951)(55,289,005 - 55,290,066)
sequence
gaattctcctttcctgaattaaaaattaactataaaactacaatatcaaa
tactgtgataagggctggcaggtttgctcagtggacaagggtggtttcca
ttgagcggggtagcatgagtttgattcctagatcccacatggtggaaaga
gccaagtctgacctccatacatgccatggcatgcacactccctcccatat
aaataaatgttaaacaattaaaatgtgataaaaatgtaagtgcaggggac
tggagagatggctcagtggtttggagcactggttgctcttacagaggacc
taggttctagtctcagcattcacatggtggcttgagaccatctataacta
cagttctaggggatattatacttcttttgatcttctggggcactaggaac
acatggtgcacacatatacacacatacagtggtggtttgaatatgcttgg
ccctgggagtggcactatttggagttatggccttgttggaagaagtgtgt
tactgtggggttgggcaatgaaagcctcctcttaaccacgtgggagtcag
acttctcctgtctgcctttggatgaagatgtagaactttcatctcgcccc
acgcctgcctggatgctgccatgctcccaccttgattataatagactgaa
cctctgagccagtaagccagttccaattaaatgttgttctttatggtatc
tcttcacagcaatggaaaccctaactaaaacactcagatacaagaaagac
atttatacacatttaaaaaatgaaacacacacacacacacacacacacac
acacacacatatatatatgcagactatcaaccaaatgaagcaga
gaattctttttttttttttttttaaagatttttttttaagatttatttat
ttattatatgtaagtacactgtagctgtcttcagacacaccagaagaggg
tgtcagatctcgttacggatggttgtgagccaccatgtggttgctgggat
ttgaactctggaccttcggaagagcagtcgggtgctcttacccactgagc
catctcaccagccccatcttgctgaattctaaacccttgatcttggtcaa
ggatgcccttggacttttggaacactggcggaagactttagccatgtcag
agcacttataggaaaatactgaaagagagcacgtggatccatactctaga
ctagcgtagtactggaactcgggaatgaaaaattaatgtatgggtagaga
acactagcctccaggaggagagcttccttgaaactcttttgcctcatgag
tgacttttaagcctttcggcttgtccagttgactcgaccagagagcgtag
cagggagggaatgagcaacctcgaccaaatatttcttcatctcttcttcc
attgcagatgggacaaaccggtcccaagatccctccaaagtcactcacta
ctcagctacttttttaagcactggacagagttagatctcagacaaacaaa
caaacaaacaaacaaacttccaattttcctctgtcaggaggtacatcccc
aataccctctgggatttttctcttgcaggatatggtggagaactcaggaa
tggtgggagaactcagacccacccatctatattcacaaagcttcttcagt
agcagattaagaaaaacagaaagagctcttttggcttgtcattttgtggg
cacatattgagctgattgtggatacaggcttttcagctgttgggtcacac
cgtgttcggcaggacaggctcagttaggcactgctaaagggagtctgaga
ctggatctctcagtgtgctgctgctacactgctgatagctaaagcttaat
ctcaagctaagcctgccagtctggctcgatgcagcagagatagaactcat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55124208_55124951
seq2: B6Ng01-090A22.b_48_791

seq1  GAATTCTCCTTTCCTGAATTAAAAATTAACTATAAAACTACAATATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTCCTGAATTAAAAATTAACTATAAAACTACAATATCAAA  50

seq1  TACTGTGATAAGGGCTGGCAGGTTTGCTCAGTGGACAAGGGTGGTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGATAAGGGCTGGCAGGTTTGCTCAGTGGACAAGGGTGGTTTCCA  100

seq1  TTGAGCGGGGTAGCATGAGTTTGATTCCTAGATCCCACATGGTGGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCGGGGTAGCATGAGTTTGATTCCTAGATCCCACATGGTGGAAAGA  150

seq1  GCCAAGTCTGACCTCCATACATGCCATGGCATGCACACTCCCTCCCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTGACCTCCATACATGCCATGGCATGCACACTCCCTCCCATAT  200

seq1  AAATAAATGTTAAACAATTAAAATGTGATAAAAATGTAAGTGCAGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTTAAACAATTAAAATGTGATAAAAATGTAAGTGCAGGGGAC  250

seq1  TGGAGAGATGGCTCAGTGGTTTGGAGCACTGGTTGCTCTTACAGAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTCAGTGGTTTGGAGCACTGGTTGCTCTTACAGAGGACC  300

seq1  TAGGTTCTAGTCTCAGCATTCACATGGTGGCTTGAGACCATCTATAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTAGTCTCAGCATTCACATGGTGGCTTGAGACCATCTATAACTA  350

seq1  CAGTTCTAGGGGATATTATACTTCTTTTGATCTTCTGGGGCACTAGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTAGGGGATATTATACTTCTTTTGATCTTCTGGGGCACTAGGAAC  400

seq1  ACATGGTGCACACATATACACACATACAGTGGTGGTTTGAATATGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGCACACATATACACACATACAGTGGTGGTTTGAATATGCTTGG  450

seq1  CCCTGGGAGTGGCACTATTTGGAGTTATGGCCTTGTTGGAAGAAGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGTGGCACTATTTGGAGTTATGGCCTTGTTGGAAGAAGTGTGT  500

seq1  TACTGTGGGGTTGGGCAATGAAAGCCTCCTCTTAACCACGTGGGAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGGTTGGGCAATGAAAGCCTCCTCTTAACCACGTGGGAGTCAG  550

seq1  ACTTCTCCTGTCTGCCTTTGGATGAAGATGTAGAACTTTCATCTCGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTGTCTGCCTTTGGATGAAGATGTAGAACTTTCATCTCGCCCC  600

seq1  ACGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATTATAATAGACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATTATAATAGACTGAA  650

seq1  CCTCTGAGCCAGTAAGCCAGTTCCAATTAAATGTTGTTCTTTATGGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCCAGTAAGCCAGTTCCAATTAAATGTTGTTCTTTATGGTATC  700

seq1  TCTTCACAGCAATGGAAACCCTAACTAAAACACTCAGATACAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCAATGGAAACCCTAACTAAAACACTCAGATACAAG  744

seq1: chr9_55289005_55290066
seq2: B6Ng01-090A22.g_73_1116 (reverse)

seq1  ATGAGTCTCATCTCCTGTGCTGCATTGGGAGCAGGACCTGGCAGGCTTTA  50
      ||||||   |||||   ||||||||   ||||  || ||||||||| |||
seq2  ATGAGTTCTATCTC---TGCTGCAT--CGAGCCAGA-CTGGCAGGC-TTA  43

seq1  GCTTGAGAATTAAGCTTTATAAGCTTATCAGCAAGTGGTAGCAAGCAGCC  100
      ||||||| ||||||||||   ||| ||||||| ||| ||||| ||||| |
seq2  GCTTGAG-ATTAAGCTTT---AGC-TATCAGC-AGT-GTAGC-AGCAG-C  84

seq1  ACAACTGAGAAGAATCAAGTCCTCAGACTTCCCTTTAGCAGTGCCTAACC  150
      || |||||||   ||| ||| ||||||| ||||||||||||||||||| |
seq2  AC-ACTGAGA--GATCCAGT-CTCAGAC-TCCCTTTAGCAGTGCCTAA-C  128

seq1  TGAGCCTGTCCCTGGCCGGACACGGTGTGA-CCAACAGCTTGAAAGCCTG  199
      |||||||||||   |||| ||||||||||| |||||||||  ||||||||
seq2  TGAGCCTGTCC--TGCCGAACACGGTGTGACCCAACAGCTGAAAAGCCTG  176

seq1  TATCCACAATCAGCTC-ATATGTGCCCAC-AAATGAC-AGCCCAGAGAGC  246
      |||||||||||||||| |||||||||||| ||||||| |||| | |||||
seq2  TATCCACAATCAGCTCAATATGTGCCCACAAAATGACAAGCCAAAAGAGC  226

seq1  TCTTTCTGTTTTTCTTAATCTGCTACTG-AGAAGCTTTGTGAATATAGAT  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTTCTGTTTTTCTTAATCTGCTACTGAAGAAGCTTTGTGAATATAGAT  276

seq1  GGGTGGGTCTGAGTTCT-CCACCATTCCTGAGTTCTCCACCATATCCTGC  344
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGTGGGTCTGAGTTCTCCCACCATTCCTGAGTTCTCCACCATATCCTGC  326

seq1  AAGAGAAAAATCCCAGAGGGTATTGGGGATGTACCTCCTGACAGAGGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAATCCCAGAGGGTATTGGGGATGTACCTCCTGACAGAGGAAA  376

seq1  ATTGGAAGTTTGTTTGTTTGTTTGTTTGTTTGTCTGAGATCTAACTCTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTTTGTTTGTTTGTTTGTTTGTTTGTCTGAGATCTAACTCTGT  426

seq1  CCAGTGCTTGAAAAAGTAGCTGAGTAGTGAGTGACTTTGGAGGGATCTTG  494
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTAAAAAAGTAGCTGAGTAGTGAGTGACTTTGGAGGGATCTTG  476

seq1  GGACCGGTTTGTCCCATCTGCAATGGAAGAAGAGATGAAGAAATATTTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGGTTTGTCCCATCTGCAATGGAAGAAGAGATGAAGAAATATTTGG  526

seq1  TCGAGGTTGCTCATTCCCTCCCTGCTACGCTCTCTGGTCGAGTCAACTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGTTGCTCATTCCCTCCCTGCTACGCTCTCTGGTCGAGTCAACTGG  576

seq1  ACAAGCCGAAAGGCTTAAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCGAAAGGCTTAAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGA  626

seq1  AGCTCTCCTCCTGGAGGCTAGTGTTCTCTACCCATACATTAATTTTTCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTCCTGGAGGCTAGTGTTCTCTACCCATACATTAATTTTTCAT  676

seq1  TCCCGAGTTCCAGTACTACGCTAGTCTAGAGTATGGATCCACGTGCTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTTCCAGTACTACGCTAGTCTAGAGTATGGATCCACGTGCTCTC  726

seq1  TTTCAGTATTTTCCTATAAGTGCTCTGACATGGCTAAAGTCTTCCGCCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATTTTCCTATAAGTGCTCTGACATGGCTAAAGTCTTCCGCCAG  776

seq1  TGTTCCAAAAGTCCAAGGGCATCCTTGACCAAGATCAAGGGTTTAGAATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAAAGTCCAAGGGCATCCTTGACCAAGATCAAGGGTTTAGAATT  826

seq1  CAGCAAGATGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGATGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG  876

seq1  CTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCAC  926

seq1  AACCATCCGTAACGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCGTAACGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAG  976

seq1  CTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAATCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAATCTT  1026

seq1  TAAAAAAAAAAAAAAAAA  1062
      ||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAAA  1044