BAC Information

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BAC

Clone NameB6Ng01-090L01
Chromosome9 (Build37)
Map Location 92,801,576 - 92,802,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L01.bB6Ng01-090L01.g
ACCDH902923DH902924
length1,1801,176
definitionDH902923|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L01, 5' end.DH902924|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagatataggtgtgtttaaaagacttgtgtggatttttttca
taaaacgttggatgagcagaatgcagagctatcatctccttggatttaat
ccactggtgggtcagaagaacttttatgacaccctagagaaatgctttta
tcataggtgataagaaggaagaacagccataaaccaacagagtaagccaa
gagactggttcttaaattaactgcaacatctatttcttacatttatttct
gatatactatgatcatttttcttgatgttcaaaatagttccaagcctttt
actaaataagatttcagaatttttctttgtatgtacttttatctttagac
acaataaattcagtctttgtcaagcttgcaaaccaaaattgcttaaatga
atttactcttgcctgctaccttttttacctcttactttgttcttaataca
aaaatgtgctggaatggaaaattatattttagcacagcttcttaagaaac
atgtaatttgtgggctgaaagaatggcattaataatatggtacttctaca
cacacacacacacacacacacacacacacacacacactctacaattacca
aaagggaaaaaaaaatcactaggcattcctgagtcaactggttgtcaagg
agacctctgcaggcatcctgttcatttgattaatgaaaatacatctacca
aaaaatcatgagctgtaattagatcttgtttgtaataatattacagatct
ctcctttagttctatttttagaattatcatgtgatatcttaaaaaactct
ggatgtctaaaattgtttcctttgtgttttaaggagaataatagtaattt
cttcaatatcattgctaagatttaagtatctacaacacaactccttgaag
ctgatgttcagaaaattataacccacctcttatcacagtatagaattacg
aatattatttatttccctttctatttttatctctttcattttgatgctat
ttcactataaaacatattcataaaaacattatgcccaggaaaagaagtaa
tgatcctgcttttatggatggtatgtttggtgttttttactagttatgtg
gacagaatttacattccgctccctcgtactcctttccagcacctgcactg
ggagggggtgaggtgctacaattctacttg
gaattctcacctgaagaatatcaaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccccgagat
tccatctcacaccagtcagaatgtctaagatcaaaaactcaggtgacagc
cgatgctggcgtggatgtggagaaagaggaacactgctccattgttggtg
ggattgcaggcttgtacaaccactctagaaatcagtctggcggttcctca
gaaaattggacataatactaccggaggattccacaatacctcttctgggc
atatatccagaagatgccccaactggtaagaaggacatatgcttcactat
gttcatagcagtcttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactacttagctattaaaagaatgagtctatgaaattcctatgcaaa
tggtaggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtgtatattagcccagaaact
tagtatacccgagatataagatacaatttgcaaaactcatgaaactgaag
aagaaggaagaccaaagtgtggatactttgcctcttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagggatccatcccataatt
aacctccaaatgatgacaccattgcatatactagcaagcgtttgctgaaa
ggaccctgatatggctgtctcttgtgagactagaccggggcctagcaaac
acagaagtgatgctcacagtcagcttattggatggatcacagggctccca
atggagagctagagaaagtactctaaggagctaaagggatctgcacccta
taggtggacacattatgactaccagtacctcagagctcttgtctctagct
gcatatgtatcaaagatgcctagttaggcatcactgtaagagaaggccat
ttgtactgcaactttatatggcccagttacagggaattgcaggtccaaaa
agtggaatggtggtgaatagagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92801576_92802761
seq2: B6Ng01-090L01.b_45_1224 (reverse)

seq1  CAAGTAGGAATTGTAGCACCT-ACACCACTCCAGTGCA-GTGCTGGAAA-  47
      |||||| |||||||||||||| || ||   |||||||| |||||||||| 
seq2  CAAGTA-GAATTGTAGCACCTCACCCCCTCCCAGTGCAGGTGCTGGAAAG  49

seq1  GAGTAACGGAGGAGCGGAATGTAAATTCTTGTCACAATAACTAGTAAAAA  97
      |||| |||  |||||||||||||||||| ||||   ||||||||||||||
seq2  GAGT-ACGAGGGAGCGGAATGTAAATTC-TGTCCACATAACTAGTAAAAA  97

seq1  AAACAAACAAACAATACAATCCATAAAAAGCAGGAATCATTACTTCTTTT  147
      | ||   ||||| |||| |||||| ||||||||| |||||||||||||||
seq2  ACAC---CAAAC-ATACCATCCAT-AAAAGCAGG-ATCATTACTTCTTTT  141

seq1  CCTGGGCATAATG-TTTTATGAATATGTTTTATAGTGAAATAGCATCAAA  196
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CCTGGGCATAATGTTTTTATGAATATGTTTTATAGTGAAATAGCATC-AA  190

seq1  AATGAAAGAGATAAAAATAGAAAGGGAAATAAATAATATTCGTAATTCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAGATAAAAATAGAAAGGGAAATAAATAATATTCGTAATTCTA  240

seq1  TACTGTGATAAGGAGGTGGGTTATAATTTTCTGAACATCAGCTTCAAGGA  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGATAA-GAGGTGGGTTATAATTTTCTGAACATCAGCTTCAAGGA  289

seq1  GTTGTGTTGTAGATACTTAAATCTTAGCAATGATATTGAAGAAATTACTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTGTAGATACTTAAATCTTAGCAATGATATTGAAGAAATTACTA  339

seq1  TTATTCTCC-TAAAACACAAAGGAAACAATTTTAGACATCCAGAGTTTTT  395
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCCTTAAAACACAAAGGAAACAATTTTAGACATCCAGAGTTTTT  389

seq1  TAAGATATCACATGATAATTCTAAAAATAGAACTAAAGGAGAGATCTGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATCACATGATAATTCTAAAAATAGAACTAAAGGAGAGATCTGTA  439

seq1  ATATTATTACAAACAAGATCTAATTACAGCTCATGATTTTTTGGTAGATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTACAAACAAGATCTAATTACAGCTCATGATTTTTTGGTAGATG  489

seq1  TATTTTCATTAATCAAATGAACAGGATGCCTGCAGAGGTCTCCTTGACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATTAATCAAATGAACAGGATGCCTGCAGAGGTCTCCTTGACAA  539

seq1  CCAGTTGACTCAGGAATGCCTAGTGATTTTTTTTTCCCTTTTGGTAATTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGACTCAGGAATGCCTAGTGATTTTTTTTTCCCTTTTGGTAATTG  589

seq1  TAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAAGT  639

seq1  ACCATATTATTAATGCCATTCTTTCAGCCCACAAATTACATGTTTCTTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTATTAATGCCATTCTTTCAGCCCACAAATTACATGTTTCTTAA  689

seq1  GAAGCTGTGCTAAAATATAATTTTCCATTCCAGCACATTTTTGTATTAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGCTAAAATATAATTTTCCATTCCAGCACATTTTTGTATTAAG  739

seq1  AACAAAGTAAGAGGTAAAAAAGGTAGCAGGCAAGAGTAAATTCATTTAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTAAGAGGTAAAAAAGGTAGCAGGCAAGAGTAAATTCATTTAAG  789

seq1  CAATTTTGGTTTGCAAGCTTGACAAAGACTGAATTTATTGTGTCTAAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGGTTTGCAAGCTTGACAAAGACTGAATTTATTGTGTCTAAAGA  839

seq1  TAAAAGTACATACAAAGAAAAATTCTGAAATCTTATTTAGTAAAAGGCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACATACAAAGAAAAATTCTGAAATCTTATTTAGTAAAAGGCTT  889

seq1  GGAACTATTTTGAACATCAAGAAAAATGATCATAGTATATCAGAAATAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATTTTGAACATCAAGAAAAATGATCATAGTATATCAGAAATAAA  939

seq1  TGTAAGAAATAGATGTTGCAGTTAATTTAAGAACCAGTCTCTTGGCTTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAATAGATGTTGCAGTTAATTTAAGAACCAGTCTCTTGGCTTAC  989

seq1  TCTGTTGGTTTATGGCTGTTCTTCCTTCTTATCACCTATGATAAAAGCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGTTTATGGCTGTTCTTCCTTCTTATCACCTATGATAAAAGCAT  1039

seq1  TTCTCTAGGGTGTCATAAAAGTTCTTCTGACCCACCAGTGGATTAAATCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGGTGTCATAAAAGTTCTTCTGACCCACCAGTGGATTAAATCC  1089

seq1  AAGGAGATGATAGCTCTGCATTCTGCTCATCCAACGTTTTATGAAAAAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGATAGCTCTGCATTCTGCTCATCCAACGTTTTATGAAAAAAA  1139

seq1  TCCACACAAGTCTTTTAAACACACCTATATCTAAAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAAGTCTTTTAAACACACCTATATCTAAAGAATTC  1180