BAC Information

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BAC

Clone NameB6Ng01-091G07
Chromosome9 (Build37)
Map Location 71,313,016 - 71,505,375
singlet/doubletdoublet
Overlap geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Upstream geneRnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091G07.bB6Ng01-091G07.g
ACCDH903430DH903431
length999167
definitionDH903430|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G07, 5' end.DH903431|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,504,746 - 71,505,375)(71,313,016 - 71,313,182)
sequence
gaattctttattccactatgacctgattggtcaatatttcctcttgttct
gtgggccaccttgttgtgctgctactgcagcatcgtgaaggcttaggact
tcccacaacctcctctcacagtgacttgcaaactcacagccacctgtaac
tccagtcctagggggatacaatgccctcttctggccaccttgggtacttt
acacacatggggtacataaagcatgcaggcaaacactcacacacagaaac
atctgtctgtctttttgtcatctgtgcttttgttactgtagcagagggac
ctttgtgcagaccaagatcacagataggcattcctgggtcttctaagagt
tgaaatagttttagttctagagtttagttgtagattcattttgtgaaagg
tgctgtcttcatgtgttttgtttgttacaaggtcatgtgtagcccaggct
agcctcaaattcattatgtagctgaggatgatttttgacctcctcttcct
cctgcttgcaccatcctagtgctggagagtgtgtcacacacctcgtgtat
gtgatgctagggaccacacccaggggcaagcattttgctaatggagccgc
tatgcccccagcctcccgttttccccatctttaaggtgggatgagaatag
cacctaggctccttagaaggtggagagctcagagaaagggcggagcataa
gtccacagctctacttaagagtaggtgacaggcagcaagtggcatgcagg
ctgtctgtcactcaccctatcttcttcctctgacattcagcttgtttttt
caatactgagtattgaagtgattccctcagctgggcggtggtggcacaca
cctttaatctcagcactcatgaaacaggcaggaggatctctgtgagttca
agccagcctagtctacgtagtgagttctaggatacagggctattacatag
acaaactgtgtcttgagaaggagaggggaaaaagatggagaggaagaga
ctgcttccattgcatctattacattctattaacaacagtgtgttttccac
tggactgctgatttgtaatagattttggggagcaccagtgggcaggcagg
ctggctagctggctggctggctaagtggctgggtgaatggatggatggat
ggatggatggatggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71504746_71505375
seq2: B6Ng01-091G07.b_43_672 (reverse)

seq1  AGATGGGGAAAACGGGAGGCTGGGGGCATAGCGGCTCCATTAGCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGAAAACGGGAGGCTGGGGGCATAGCGGCTCCATTAGCAAAATG  50

seq1  CTTGCCCCTGGGTGTGGTCCCTAGCATCACATACACGAGGTGTGTGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCTGGGTGTGGTCCCTAGCATCACATACACGAGGTGTGTGACAC  100

seq1  ACTCTCCAGCACTAGGATGGTGCAAGCAGGAGGAAGAGGAGGTCAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCAGCACTAGGATGGTGCAAGCAGGAGGAAGAGGAGGTCAAAAAT  150

seq1  CATCCTCAGCTACATAATGAATTTGAGGCTAGCCTGGGCTACACATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGCTACATAATGAATTTGAGGCTAGCCTGGGCTACACATGACC  200

seq1  TTGTAACAAACAAAACACATGAAGACAGCACCTTTCACAAAATGAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAAACAAAACACATGAAGACAGCACCTTTCACAAAATGAATCTA  250

seq1  CAACTAAACTCTAGAACTAAAACTATTTCAACTCTTAGAAGACCCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAACTCTAGAACTAAAACTATTTCAACTCTTAGAAGACCCAGGAA  300

seq1  TGCCTATCTGTGATCTTGGTCTGCACAAAGGTCCCTCTGCTACAGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCTGTGATCTTGGTCTGCACAAAGGTCCCTCTGCTACAGTAACA  350

seq1  AAAGCACAGATGACAAAAAGACAGACAGATGTTTCTGTGTGTGAGTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGATGACAAAAAGACAGACAGATGTTTCTGTGTGTGAGTGTTT  400

seq1  GCCTGCATGCTTTATGTACCCCATGTGTGTAAAGTACCCAAGGTGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATGCTTTATGTACCCCATGTGTGTAAAGTACCCAAGGTGGCCAG  450

seq1  AAGAGGGCATTGTATCCCCCTAGGACTGGAGTTACAGGTGGCTGTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATTGTATCCCCCTAGGACTGGAGTTACAGGTGGCTGTGAGTT  500

seq1  TGCAAGTCACTGTGAGAGGAGGTTGTGGGAAGTCCTAAGCCTTCACGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCACTGTGAGAGGAGGTTGTGGGAAGTCCTAAGCCTTCACGATG  550

seq1  CTGCAGTAGCAGCACAACAAGGTGGCCCACAGAACAAGAGGAAATATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAGCAGCACAACAAGGTGGCCCACAGAACAAGAGGAAATATTGA  600

seq1  CCAATCAGGTCATAGTGGAATAAAGAATTC  630
      ||||||||||||||||||||||||||||||
seq2  CCAATCAGGTCATAGTGGAATAAAGAATTC  630

seq1: chr9_71313016_71313182
seq2: B6Ng01-091G07.g_75_241

seq1  CTGCTTCCATTGCATCTATTACATTCTATTAACAACAGTGTGTTTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCATTGCATCTATTACATTCTATTAACAACAGTGTGTTTTCCAC  50

seq1  TGGACTGCTGATTTGTAATAGATTTTGGGGAGCACCAGTGGGCAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCTGATTTGTAATAGATTTTGGGGAGCACCAGTGGGCAGGCAGG  100

seq1  CTGGCTAGCTGGCTGGCTGGCTAAGTGGCTGGGTGAATGGATGGATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGCTGGCTGGCTGGCTAAGTGGCTGGGTGAATGGATGGATGGAT  150

seq1  GGATGGATGGATGGATG  167
      |||||||||||||||||
seq2  GGATGGATGGATGGATG  167