BAC Information

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BAC

Clone NameB6Ng01-091G19
Chromosome9 (Build37)
Map Location 82,072,391 - 82,219,234
singlet/doubletdoublet
Overlap geneLOC100039085
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091G19.bB6Ng01-091G19.g
ACCDH903454DH903455
length1,002874
definitionDH903454|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G19, 5' end.DH903455|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,218,506 - 82,219,234)(82,072,391 - 82,073,263)
sequence
gaattctaggacagcctgggatatagtgtgagacccaatctcaagagaaa
aaatgaatgtatgaatgaatcactcaatctataaatgagcaaaacaattt
gagaccggatgactgttgctaggatacgtgtctgtttttttgttgtcttt
ttgtatctaagtctttacaactttttgatgtcattgccttccctgaagat
accattatttctgaaaaaatgattacagcagactgtcaagtataactttc
caatgcctcaagatattggaatagccaaggattttttttccaattctacc
ctaatagcataggacataaaccagaaatagaccgatagaattacatcaat
ctaaagggctactatataacaaagcaagagagtagagaggcaattgtaga
actgcagaaaatatatctggcaagggttaaatttctatatatgttaacac
acacacacacacacacacacacacacacacacaacagcataagcaacagc
acagataacctaactttaaaatgggaaatagaacttaaattgaaaattaa
aagaaaagatagtaaaaaaaaatgatacagagaaaagaaacatgtgcagc
cctgaacactatgaaaatgctagttaaaatgaagagatgttacctttccc
taggaagaacagctattgctaaaaggacaagttagggtgagaatgtggac
aattgggtgatgatggaaatataaatatctatagctatggtggaaaacta
tggagattactcaatcaattacaagtaaaattgtcttagctaaaggtgag
atttttatatctacctccccactccatgctgtaattttgtctggctttat
cttgtacagatttcagacattccgcaagaaccactgtgaatccatatgtg
aacctgaattttgtgttccagaaatcactctttcactgtggttatccagt
gcctctctctggatcttgtacttttgtctgttaccctcttccacagtgat
ta
gaattcctaaactgataaacaacttcagcaaagatgctagatataaaatt
agctcaaacaaatgagtagccttcctatactcaacggataaacaggatga
gaaagaaattatggaaacaacacccttctcaatagtcacaaataatataa
aataccttagtgtgactctaactaagcaagtgaaagatctgtatgataag
aactccaagtctctaaagaaagaaatcgaagatctcagaagatggaaaaa
tctcccatgctcatgcattggcaggattgatatagtaaaactagacatct
tcccaaaagcaacttacagattcaatacaatccccatcaaaattccaact
caattcttcacagaatcagaaagggaagaaaagacagatatcggttagtt
tcagaaatacaagaacaataaacatatttgaatgatatgtgttttctagt
ctgtatcattatcaaaaattaaaaatgattgcctaaataaaacatataca
atgataatgccagttgacatacaaatatggataggaaaaattgtacaagg
ccttaactcttgataaagacctgtagatgatctatggctgctgatgggga
aaaaaaaatccattgtctcttgggacaatccccagtagtctactctaaac
acatacacatatgagcaacattttatgtactcatacacatatgagcaaca
ttttatgtactcagtaggatatatatcctactggctctctctatatatgc
acatatttatgtgaacatatacaaaaaataattaaagaaggagttatata
acaacaattaaagatgaggtgaattttgtgagggagttgggtacatagaa
gttggagggtggggatggaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82218506_82219234
seq2: B6Ng01-091G19.b_45_773 (reverse)

seq1  GATATTTATATTTCCATCATCACCCAATTGTCCACATTCTCACCCTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATATTTCCATCATCACCCAATTGTCCACATTCTCACCCTAACT  50

seq1  TGTCCTTTTAGCAATAGCTGTTCTTCCTAGGGAAAGGTAACATCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTAGCAATAGCTGTTCTTCCTAGGGAAAGGTAACATCTCTTCA  100

seq1  TTTTAACTAGCATTTTCATAGTGTTCAGGGCTGCACATGTTTCTTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTAGCATTTTCATAGTGTTCAGGGCTGCACATGTTTCTTTTCTC  150

seq1  TGTATCATTTTTTTTTACTATCTTTTCTTTTAATTTTCAATTTAAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATTTTTTTTTACTATCTTTTCTTTTAATTTTCAATTTAAGTTCT  200

seq1  ATTTCCCATTTTAAAGTTAGGTTATCTGTGCTGTTGCTTATGCTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATTTTAAAGTTAGGTTATCTGTGCTGTTGCTTATGCTGTTGTG  250

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACATATATAGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACATATATAGAAATT  300

seq1  TAACCCTTGCCAGATATATTTTCTGCAGTTCTACAATTGCCTCTCTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTGCCAGATATATTTTCTGCAGTTCTACAATTGCCTCTCTACTC  350

seq1  TCTTGCTTTGTTATATAGTAGCCCTTTAGATTGATGTAATTCTATCGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTGTTATATAGTAGCCCTTTAGATTGATGTAATTCTATCGGTC  400

seq1  TATTTCTGGTTTATGTCCTATGCTATTAGGGTAGAATTGGAAAAAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGTTTATGTCCTATGCTATTAGGGTAGAATTGGAAAAAAAATC  450

seq1  CTTGGCTATTCCAATATCTTGAGGCATTGGAAAGTTATACTTGACAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTATTCCAATATCTTGAGGCATTGGAAAGTTATACTTGACAGTCT  500

seq1  GCTGTAATCATTTTTTCAGAAATAATGGTATCTTCAGGGAAGGCAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATCATTTTTTCAGAAATAATGGTATCTTCAGGGAAGGCAATGAC  550

seq1  ATCAAAAAGTTGTAAAGACTTAGATACAAAAAGACAACAAAAAAACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGTTGTAAAGACTTAGATACAAAAAGACAACAAAAAAACAGAC  600

seq1  ACGTATCCTAGCAACAGTCATCCGGTCTCAAATTGTTTTGCTCATTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATCCTAGCAACAGTCATCCGGTCTCAAATTGTTTTGCTCATTTATA  650

seq1  GATTGAGTGATTCATTCATACATTCATTTTTTCTCTTGAGATTGGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTGATTCATTCATACATTCATTTTTTCTCTTGAGATTGGGTCTC  700

seq1  ACACTATATCCCAGGCTGTCCTAGAATTC  729
      |||||||||||||||||||||||||||||
seq2  ACACTATATCCCAGGCTGTCCTAGAATTC  729

seq1: chr9_82072391_82073263
seq2: B6Ng01-091G19.g_69_942

seq1  GAATTCCTAAACTGATAAACAACTTCAGCAAAGATGCTAGATATAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAACTGATAAACAACTTCAGCAAAGATGCTAGATATAAAATT  50

seq1  AGCTCAAACAAATGAGTAGCCTTCCTATACTCAACGGATAAACAGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAACAAATGAGTAGCCTTCCTATACTCAACGGATAAACAGGATGA  100

seq1  GAAAGAAATTATGGAAACAACACCCTTCTCAATAGTCACAAATAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTATGGAAACAACACCCTTCTCAATAGTCACAAATAATATAA  150

seq1  AATACCTTAGTGTGACTCTAACTAAGCAAGTGAAAGATCTGTATGATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTAGTGTGACTCTAACTAAGCAAGTGAAAGATCTGTATGATAAG  200

seq1  AACTCCAAGTCTCTAAAGAAAGAAATCGAAGATCTCAGAAGATGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAAGTCTCTAAAGAAAGAAATCGAAGATCTCAGAAGATGGAAAAA  250

seq1  TCTCCCATGCTCATGCATTGGCAGGATTGATATAGTAAAACTAGACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATGCTCATGCATTGGCAGGATTGATATAGTAAAACTAGACATCT  300

seq1  TCCCAAAAGCAACTTACAGATTCAATACAATCCCCATCAAAATTCCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGCAACTTACAGATTCAATACAATCCCCATCAAAATTCCAACT  350

seq1  CAATTCTTCACAGAATCAGAAAGGGAAGAAAAGACAGATATCGGTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTCACAGAATCAGAAAGGGAAGAAAAGACAGATATCGGTTAGTT  400

seq1  TCAGAAATACAAGAACAATAAACATATTTGAATGATATGTGTTTTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATACAAGAACAATAAACATATTTGAATGATATGTGTTTTCTAGT  450

seq1  CTGTATCATTATCAAAAATTAAAAATGATTGCCTAAATAAAACATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATTATCAAAAATTAAAAATGATTGCCTAAATAAAACATATACA  500

seq1  ATGATAATGCCAGTTGACATACAAATATGGATAGGAAAAATTGTACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATGCCAGTTGACATACAAATATGGATAGGAAAAATTGTACAAGG  550

seq1  CCTTAACTCTTGATAAAGACCTGTAGATGATCTATGGCTGCTGATGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTCTTGATAAAGACCTGTAGATGATCTATGGCTGCTGATGGGGA  600

seq1  AAAAAAAATCCATTGTCTCTTGGGACAATCCCCAGTAGTCTACTCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCATTGTCTCTTGGGACAATCCCCAGTAGTCTACTCTAAAC  650

seq1  ACATACACATATGAGCAACATTTTATGTACTCATACACATATGAGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATATGAGCAACATTTTATGTACTCATACACATATGAGCAACA  700

seq1  TTTTATGTACTCAGTAGGATATATATCCTACTGGCTCTCTCTATATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTACTCAGTAGGATATATATCCTACTGGCTCTCTCTATATATGC  750

seq1  ACATATTTATGTGAACATATACAAAAAATAATTAAAGAAGGAGTTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTATGTGAACATATACAAAAAATAATTAAAGAAGGAGTTATATA  800

seq1  ACAACAATTAAAGATGAGGTGAATTTTGTGAGGGAGTTGGGTACATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATTAAAGATGAGGTGAATTTTGTGAGGGAGTTGGGTACATAGAA  850

seq1  GTTGGAGGGT-GGGATGGAAATGA  873
      |||||||||| |||||||||||||
seq2  GTTGGAGGGTGGGGATGGAAATGA  874