BAC Information

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BAC

Clone NameB6Ng01-091K19
Chromosome9 (Build37)
Map Location 33,802,111 - 33,896,557
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091K19.bB6Ng01-091K19.g
ACCDH903636DH903637
length9651,073
definitionDH903636|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K19, 5' end.DH903637|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,802,111 - 33,802,955)(33,895,476 - 33,896,557)
sequence
gaattctttgttgttctctgagccccctctattaagggggttatttgatt
ttctggagtccaccttcttgagttctttatatatgttggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttccaggcttttccctac
tttctcctctataagtttcattgtctctggttttatgtggagttccttaa
tccacttagatttgaccttactacaaggagatagaaatggatcaatttgc
atttttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggtttatctctgggtcttcaattctcttccattgg
tctacttgtctgtcactataccaataccatgcagtttttatcacagttgc
tctgtagtacagctttaggtattgtaatgtgttttaagtagtcataagta
ggatgaaaatttaaaggatgtctgaaataaatctaatattcccacaatcc
accctagctgatccagggtgggaagctgaatttctacacattctctccag
ccctggcttcacaacacacttctttcaagtcaggaagcatcaagagcaac
ttctaggaagaaactatagccttccttctgaggtcacactgtctcctcag
caagtgttccctcttgaccactagtctattttattttaattttatttata
tctatgggtgttttacctgtatgtacatctatgtgctactatgcttgtgt
ctcaggctcccaaaa
gaattctttggttttcaataatgttttgtattttctgtgtgagaatatga
aatatatttgtcattttcggccctatattttttcgtgttatggtattata
ttaccccagaagggacattaagagaaatgggccatcaaatattgaaaaca
aacgaccgggaatgatatagcaagtcaatatgaagcaaaaagtaaaatga
attaaagaaagtcggggaaccaatataaacattggactgaacttaataat
gtcactacaaaacaagagttatatcgtacactgataatgttaactatggg
gaagggaaagtgtgaatcacaagcacctatggatctttccacagaacctc
tgcatatagaaacaataactgccagaactgaactaagatgcacatgaatc
aataatattggaacttaccccttgctgcagttggcagaacaaatgtatga
atcataagcaattattccagcaaactatcagacatacccattctcacaca
cttgtatgtagatatggaactatagccaaatggacaggaatagtattatt
cttcccctcaaacacacttgaaatacgtataaaagtagagttggagttag
gccttaataaaagaatatctacaacaaatatttctatgaaaaatagtgac
aaggatatggagcatctagacatacaaacatgtctaggaggcatggaaca
atgtgactccttggaaagattccacatttcattaaagagcttaacacaac
actcccatgcaacctagtctttcgcacccatagaaatatgcaacaaaaat
aagatatgtttcacatcaaagtagagccagatttattttttggttagaaa
ctgaagcaagtttgattagaagactagaagctactgtcttccagtagtct
catcaaaatggctaagtaaatgtaatgcatgcattctatagaaatgcctg
gatcattgatgcatggaatgacctgcctacatctcaaaataattttgtga
aatgccagaccaagccaagatcagattatccacccctttgaatccactca
gtaaaaatttgcaaacattgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33802111_33802955
seq2: B6Ng01-091K19.b_164_1007

seq1  AAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTC  50

seq1  TTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTC  100

seq1  TCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCT  150

seq1  GTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTACCCATATCTTCCAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAT  200

seq1  TGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAC  250

seq1  TACAAGGAGATAGAAATGGATCAATTTGCATTTTTCTACATGATAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAGATAGAAATGGATCAATTTGCATTTTTCTACATGATAACCAC  300

seq1  CAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGAT  350

seq1  GGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTTA  400

seq1  TCTCTGGGTCTTCAATTCTCTTCCATTGGTCTACTTGTCTGTCACTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGTCTTCAATTCTCTTCCATTGGTCTACTTGTCTGTCACTATAC  450

seq1  CAATACCATGCAGTTTTTATCACAGTTGCTCTGTAGTACAGCTTTAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCATGCAGTTTTTATCACAGTTGCTCTGTAGTACAGCTTTAGGTA  500

seq1  TTGTAATGTGTTTTAAGTAGTCATAAGTAGGATGAAAATTTAAAGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGTGTTTTAAGTAGTCATAAGTAGGATGAAAATTTAAAGGATGT  550

seq1  CTGAAATAAATCTAATATTCCCACAATCCACCCTAGCTGATCCAGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAAATCTAATATTCCCACAATCCACCCTAGCTGATCCAGGGTGG  600

seq1  GAAGCTGAATTTCTACACATTCTCTCCAGCCCTGGCTTCACAACACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAATTTCTACACATTCTCTCCAGCCCTGGCTTCACAACACACTT  650

seq1  CTTTCAAGTCAGGAAGCATCAAGAGCAACTTCTAGGAAGAAACTATAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTCAGGAAGCATCAAGAGCAACTTCTAGGAAGAAACTATAGCC  700

seq1  TTCCTTCTGAGGTCACACTGTCTCCTCAGCAAGTGTTCCCTCTTGACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGAGGTCACACTGTCTCCTCAGCAAGTGTTCCCTCTTGACCAC  750

seq1  TAGTCTATTTTATTTTAATTTTATTTTATATCTATGGGTGTTTTACCTGT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGTCTATTTTATTTTAATTTTA-TTTATATCTATGGGTGTTTTACCTGT  799

seq1  ATGTACATCTATGTGCTACTATGCATGTGTCTCAGGCTCACAAAA  845
      |||||||||||||||||||||||| |||||||||||||| |||||
seq2  ATGTACATCTATGTGCTACTATGCTTGTGTCTCAGGCTCCCAAAA  844

seq1: chr9_33895476_33896557
seq2: B6Ng01-091K19.g_68_1140 (reverse)

seq1  TAGCAATGGTTTGCAAAATTTTTACAGGTGTGGAATCAAA-GGGTGTATA  49
      ||||||| |||||| ||||||||||  | ||||| ||||| ||||| |||
seq2  TAGCAAT-GTTTGC-AAATTTTTAC-TGAGTGGATTCAAAGGGGTGGATA  47

seq1  ATCTGATCTTGCCTTGGTTCTGCCATTCCACAAAATTATTCTGAGATTTA  99
      ||||||||||| ||||| |||| |||| |||||||||||| |||||| ||
seq2  ATCTGATCTTGGCTTGG-TCTGGCATTTCACAAAATTATTTTGAGATGTA  96

seq1  GGCATGTCATTTCATACATCAATGGTCCATTCATTTCTAATGTGAGTGCA  149
      |||| |||||| ||| |||||||| ||||  ||||||||    || ||||
seq2  GGCAGGTCATTCCATGCATCAATGATCCAGGCATTTCTA--TAGAATGCA  144

seq1  TGCATTACAATTTACTTAGCCATATTGAT-AGACAACTGGAAGACAGTTG  198
      |||||||| |||||||||||||| ||||| |||| ||||||||||||| |
seq2  TGCATTAC-ATTTACTTAGCCATTTTGATGAGACTACTGGAAGACAGTAG  193

seq1  CTTCTAGTCTTCTAATCAAAACTTGCTTCAGTTTCTAACC-AAAAATAAA  247
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  CTTCTAGTCTTCTAATC-AAACTTGCTTCAGTTTCTAACCAAAAAATAAA  242

seq1  TCTGGCTTCTACTTTTGATTTGAAACAT-TCTTATTTTTGTTGCATATTT  296
      |||||| ||||| |||||| |||||||| |||||||||||||||||||||
seq2  TCTGGC-TCTAC-TTTGATGTGAAACATATCTTATTTTTGTTGCATATTT  290

seq1  CTATGGGTGTGTAAAGACTAGGTTGAATGGGAGTGTTGTGTTAAGCTCTT  346
      ||||||||| | ||||||||||||| ||||||||||||||||||||||||
seq2  CTATGGGTGCG-AAAGACTAGGTTGCATGGGAGTGTTGTGTTAAGCTCTT  339

seq1  TAATGAAATGTGGAATCTTTCTGAAGGAGTCACATTGTTCCATGCCTCCT  396
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TAATGAAATGTGGAATCTTTC-CAAGGAGTCACATTGTTCCATGCCTCCT  388

seq1  AGACATGTTTGTATGTCTAGATGCTCCATATCCTTGTCACTATTTTTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTTGTATGTCTAGATGCTCCATATCCTTGTCACTATTTTTCAT  438

seq1  AGAAATATTTATTGTAGATATTCTTTTATTAAGGCCTAACTCAAACTCTA  496
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  AGAAATATTTGTTGTAGATATTCTTTTATTAAGGCCTAACTCCAACTCTA  488

seq1  CTTTTATACGTATTTCAAGTGTGTTTGAGGGGAAGAATAATACTATTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATACGTATTTCAAGTGTGTTTGAGGGGAAGAATAATACTATTCCT  538

seq1  GTCCATTTGGCTATAGTTCCATATCTACATACAAGTGTGTGAGAATGGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGGCTATAGTTCCATATCTACATACAAGTGTGTGAGAATGGGT  588

seq1  ATGTCTGATAGTTTGCTGGAATAATTGCTTATGATTCATACATTTGTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGATAGTTTGCTGGAATAATTGCTTATGATTCATACATTTGTTCT  638

seq1  GCCAACTGCAGCAAGGGGTAAGTTCCAATATTATTGATTCATGTGCATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGCAGCAAGGGGTAAGTTCCAATATTATTGATTCATGTGCATCT  688

seq1  TAGTTCAGTTCTGGCAGTTATTGTTTAATATATGCAGAGGTTCTGTGGAA  746
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TAGTTCAGTTCTGGCAGTTATTGTTT-CTATATGCAGAGGTTCTGTGGAA  737

seq1  AGATCCATATGTGCTTGTGATTTATACTTTCCCTTCCCCATAGTTAACAT  796
      ||||||||| |||||||||||| | |||||||||||||||||||||||||
seq2  AGATCCATAGGTGCTTGTGATTCACACTTTCCCTTCCCCATAGTTAACAT  787

seq1  TATCAGTGTACGATATAACTCTTGTTTTGTAGTGACATTATTAAGTTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTACGATATAACTCTTGTTTTGTAGTGACATTATTAAGTTCAG  837

seq1  TCCAATGTTTATATTGGTTCCCTGACTTTCTTTAATTCATTTTACTTTTT  896
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCAATGTTTATATTGGTTCCCCGACTTTCTTTAATTCATTTTACTTTTT  887

seq1  GCTTCATATTAACTTGCTATATCATTCCTGTTAGTTTGTTTTCAATATTT  946
      |||||||||| ||||||||||||||||| | | |||||||||||||||||
seq2  GCTTCATATTGACTTGCTATATCATTCCCGGTCGTTTGTTTTCAATATTT  937

seq1  ATTGGCCCATTTATTTTAATGTCCCTTTTGGGGTAATATAATACCATAAC  996
        |||||||||| | |||||||||||| ||||||||||||||||||||||
seq2  GATGGCCCATTTCTCTTAATGTCCCTTCTGGGGTAATATAATACCATAAC  987

seq1  ATGAAAAAATATAGGGCTGAAAATAACAAATATATTTAATATTCTCACAC  1046
      | ||||||||||||||| |||||| |||||||||||| ||||||||||||
seq2  ACGAAAAAATATAGGGCCGAAAATGACAAATATATTTCATATTCTCACAC  1037

seq1  AGAAAATACAAAATACTATTGAAAACTAAAGAATTC  1082
      ||||||||||||| | |||||||||| |||||||||
seq2  AGAAAATACAAAACATTATTGAAAACCAAAGAATTC  1073